Wall clock time and date at job start Tue Mar 31 2020 18:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47459 * 296.80219 * 3 2 1 5 5 C 1.46899 * 110.99916 * 293.95621 * 4 3 2 6 6 C 1.47202 * 109.47096 * 66.04498 * 5 4 3 7 7 N 2.88940 * 70.20899 * 265.57258 * 2 1 3 8 8 C 1.46902 * 111.00216 * 170.00269 * 4 3 2 9 9 C 1.50699 * 109.46809 * 190.00273 * 8 4 3 10 10 C 1.35071 * 126.07522 * 259.95199 * 9 8 4 11 11 N 1.35049 * 107.98964 * 180.02562 * 10 9 8 12 12 C 1.46498 * 125.92996 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47277 * 125.00613 * 12 11 10 14 14 H 1.08002 * 119.99814 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00295 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99588 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99978 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47413 * 89.99682 * 17 15 13 19 19 H 1.48502 * 109.47123 * 209.99755 * 17 15 13 20 20 H 1.48505 * 109.47208 * 329.99015 * 17 15 13 21 21 N 1.40072 * 108.14140 * 0.02562 * 11 10 9 22 22 C 1.31654 * 108.10023 * 359.97438 * 21 11 10 23 23 C 1.48364 * 126.03615 * 179.97438 * 22 21 11 24 24 C 1.39773 * 120.90397 * 144.75084 * 23 22 21 25 25 C 1.37964 * 119.02400 * 179.75407 * 24 23 22 26 26 N 1.31931 * 120.87590 * 0.53055 * 25 24 23 27 27 C 1.31938 * 122.00819 * 359.74023 * 26 25 24 28 28 C 1.37962 * 120.87881 * 359.97352 * 27 26 25 29 29 H 4.40888 * 5.52190 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47093 * 176.80365 * 3 2 1 31 31 H 1.08999 * 109.47428 * 56.80184 * 3 2 1 32 32 H 1.09002 * 109.47064 * 186.03794 * 5 4 3 33 33 H 1.08999 * 109.47252 * 306.04616 * 5 4 3 34 34 H 1.08997 * 109.46783 * 70.00082 * 8 4 3 35 35 H 1.08997 * 109.46741 * 310.00004 * 8 4 3 36 36 H 1.08002 * 126.00003 * 0.04149 * 10 9 8 37 37 H 1.09000 * 109.47281 * 245.00361 * 12 11 10 38 38 H 1.09004 * 109.46974 * 5.00328 * 12 11 10 39 39 H 0.96999 * 119.99917 * 180.02562 * 16 15 13 40 40 H 1.08002 * 120.48735 * 0.02562 * 24 23 22 41 41 H 1.07992 * 119.56165 * 180.26789 * 25 24 23 42 42 H 1.08004 * 119.56100 * 180.02562 * 27 26 25 43 43 H 1.08003 * 120.48820 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.6236 1.2362 5 6 2.7861 0.1874 2.4100 6 6 1.3240 0.1998 2.5797 7 7 0.1957 0.2099 2.7106 8 6 4.5850 -0.8563 1.1700 9 6 5.0102 -1.7111 2.3359 10 6 5.5837 -1.2714 3.4771 11 7 5.8124 -2.3417 4.2682 12 6 6.4219 -2.3117 5.6001 13 6 5.5028 -2.9823 6.5883 14 1 4.5589 -3.3897 6.2575 15 6 5.8665 -3.0748 7.9151 16 7 7.0157 -2.5783 8.3180 17 14 4.7269 -3.9054 9.1401 18 1 5.0454 -5.3542 9.2089 19 1 4.9110 -3.2939 10.4808 20 1 3.3182 -3.7283 8.7046 21 7 5.3658 -3.4856 3.5943 22 6 4.8811 -3.1107 2.4291 23 6 4.3021 -4.0046 1.3961 24 6 3.2280 -3.5866 0.6054 25 6 2.7231 -4.4476 -0.3471 26 7 3.2339 -5.6533 -0.5087 27 6 4.2439 -6.0883 0.2203 28 6 4.8122 -5.2896 1.1911 29 1 -1.0499 0.0001 0.0003 30 1 3.0089 1.0269 -0.0573 31 1 3.0096 -0.5618 -0.8599 32 1 3.2513 -0.2397 3.2984 33 1 3.1440 1.2070 2.2669 34 1 5.1084 0.0990 1.2096 35 1 4.8288 -1.3658 0.2378 36 1 5.8180 -0.2443 3.7150 37 1 7.3756 -2.8390 5.5752 38 1 6.5865 -1.2771 5.9011 39 1 7.2717 -2.6437 9.2513 40 1 2.8023 -2.6025 0.7352 41 1 1.8962 -4.1320 -0.9658 42 1 4.6314 -7.0827 0.0543 43 1 5.6390 -5.6520 1.7840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336857222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:42 Heat of formation + Delta-G solvation = 215.436724 kcal Electronic energy + Delta-G solvation = -27784.410485 eV Core-core repulsion = 24026.900459 eV Total energy + Delta-G solvation = -3757.510026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95305 -39.53024 -38.55956 -35.93393 -34.21397 -33.22515 -32.91353 -31.20293 -30.96780 -30.32330 -28.78636 -27.80953 -26.20179 -24.24273 -23.28003 -23.12528 -22.00815 -20.18461 -19.53450 -18.36882 -17.90201 -16.81392 -16.69310 -16.38144 -15.80535 -15.70375 -15.27043 -15.19793 -14.75558 -14.41408 -14.22455 -13.81977 -13.64290 -13.49183 -13.29155 -13.19345 -13.10657 -12.66871 -12.53183 -12.44620 -12.31385 -11.87310 -11.77976 -11.70913 -11.37072 -11.05394 -10.95017 -10.47276 -10.35074 -10.16345 -10.08097 -10.04586 -9.51509 -9.33048 -8.94551 -8.74454 -8.72986 -8.47587 -7.85495 -6.35564 -4.41069 1.23218 1.37711 2.16715 2.54900 2.68285 2.89636 3.09954 3.14254 3.18690 3.25133 3.25522 3.33969 3.85636 4.09362 4.17316 4.23538 4.27431 4.63588 4.71331 4.89260 4.92486 5.01852 5.09035 5.14459 5.16302 5.23696 5.36595 5.40723 5.46215 5.47787 5.60657 5.82824 5.88230 5.94167 6.07899 6.17489 6.25015 6.54174 6.63770 6.65837 6.77340 6.87239 6.92428 7.09686 7.51137 7.55843 7.65168 7.72761 7.77994 8.14857 8.33583 8.67155 9.25994 10.73349 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009187 B = 0.003955 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.013745 B = 7078.390222 C = 8650.655319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.200 4.200 3 C 0.159 3.841 4 N -0.530 5.530 5 C 0.145 3.855 6 C 0.217 3.783 7 N -0.429 5.429 8 C 0.143 3.857 9 C -0.248 4.248 10 C 0.056 3.944 11 N -0.314 5.314 12 C 0.255 3.745 13 C -0.532 4.532 14 H 0.069 0.931 15 C 0.066 3.934 16 N -0.893 5.893 17 Si 0.906 3.094 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.272 1.272 21 N -0.257 5.257 22 C 0.089 3.911 23 C 0.049 3.951 24 C -0.157 4.157 25 C 0.087 3.913 26 N -0.493 5.493 27 C 0.089 3.911 28 C -0.151 4.151 29 H 0.212 0.788 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.169 0.831 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.268 0.732 40 H 0.168 0.832 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 6.457 -17.427 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.201 4.201 3 C 0.032 3.968 4 N -0.256 5.256 5 C 0.015 3.985 6 C -0.102 4.102 7 N -0.106 5.106 8 C 0.017 3.983 9 C -0.261 4.261 10 C -0.094 4.094 11 N -0.093 5.093 12 C 0.138 3.862 13 C -0.570 4.570 14 H 0.088 0.912 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.733 3.267 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.197 1.197 21 N -0.081 5.081 22 C -0.074 4.074 23 C 0.039 3.961 24 C -0.178 4.178 25 C -0.069 4.069 26 N -0.203 5.203 27 C -0.068 4.068 28 C -0.172 4.172 29 H 0.229 0.771 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.144 0.856 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.186 0.814 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.185 0.815 41 H 0.167 0.833 42 H 0.169 0.831 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.820 4.531 -16.650 17.916 hybrid contribution 0.357 1.494 1.038 1.854 sum -4.463 6.025 -15.613 17.320 Atomic orbital electron populations 1.24860 0.95862 1.00249 0.98161 1.22706 0.94188 1.00948 1.02248 1.19116 0.85179 0.99024 0.93441 1.61862 1.16084 1.46695 1.00912 1.19588 0.83446 0.98276 0.97175 1.28740 0.94982 0.93297 0.93135 1.81112 1.12707 1.08268 1.08555 1.20242 0.83617 0.97462 0.97023 1.19449 1.15317 0.92813 0.98567 1.22292 1.01187 0.94548 0.91412 1.49474 1.42008 1.02537 1.15320 1.19829 0.94140 0.99580 0.72639 1.21206 1.04999 1.38694 0.92132 0.91241 1.24909 0.95504 0.95133 0.98228 1.69902 1.21033 1.44882 1.17332 0.86345 0.80875 0.79671 0.79787 1.20208 1.20907 1.19652 1.77726 1.16428 1.09001 1.04958 1.20271 1.01676 0.91971 0.93488 1.18178 0.93669 0.91995 0.92295 1.22919 0.95943 1.03434 0.95545 1.22602 0.98546 0.89335 0.96418 1.67566 1.10635 1.16097 1.25982 1.22571 0.92488 0.99572 0.92122 1.22283 1.01710 0.94097 0.99135 0.77087 0.91693 0.87721 0.85616 0.89999 0.92981 0.89297 0.81427 0.93436 0.92485 0.92204 0.81507 0.83257 0.83073 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 17.05 29.55 0.50 -1.36 16 2 C -0.20 -2.05 10.94 -37.12 -0.41 -2.46 16 3 C 0.16 1.19 5.29 -6.61 -0.03 1.15 16 4 N -0.53 -4.85 2.26 -243.11 -0.55 -5.40 16 5 C 0.15 1.38 5.32 -6.61 -0.04 1.35 16 6 C 0.22 2.78 12.64 -20.76 -0.26 2.51 16 7 N -0.43 -6.47 16.65 42.15 0.70 -5.77 16 8 C 0.14 1.28 4.39 -4.98 -0.02 1.25 16 9 C -0.25 -3.35 4.71 -104.76 -0.49 -3.84 16 10 C 0.06 0.83 10.37 -17.26 -0.18 0.66 16 11 N -0.31 -6.21 3.67 -62.58 -0.23 -6.44 16 12 C 0.26 5.84 6.26 -5.20 -0.03 5.81 16 13 C -0.53 -13.90 9.23 -34.44 -0.32 -14.22 16 14 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -24.12 13.29 55.43 0.74 -23.38 16 17 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 N -0.26 -5.26 12.42 33.42 0.42 -4.85 16 22 C 0.09 1.49 6.78 -82.78 -0.56 0.93 16 23 C 0.05 0.74 5.83 -104.58 -0.61 0.13 16 24 C -0.16 -2.09 8.90 -39.11 -0.35 -2.44 16 25 C 0.09 1.12 11.17 -17.61 -0.20 0.92 16 26 N -0.49 -6.93 10.35 -13.35 -0.14 -7.07 16 27 C 0.09 1.18 11.17 -17.61 -0.20 0.98 16 28 C -0.15 -2.19 9.87 -39.11 -0.39 -2.57 16 29 H 0.21 1.92 7.80 -54.10 -0.42 1.49 16 30 H 0.07 0.36 8.06 -51.93 -0.42 -0.06 16 31 H 0.10 0.63 7.93 -51.93 -0.41 0.22 16 32 H 0.13 1.36 6.28 -51.93 -0.33 1.03 16 33 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 34 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 35 H 0.09 0.74 7.59 -51.93 -0.39 0.35 16 36 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.17 2.08 4.75 -52.49 -0.25 1.83 16 41 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 42 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 43 H 0.14 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -31.85 378.02 -7.20 -39.06 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.14 Total: 1.92 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -3.68 Total: -9.58 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.94 Total: -52.91 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.85 -7.20 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336857222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.493 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 222.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 215.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds