Wall clock time and date at job start Tue Mar 31 2020 18:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47459 * 296.80219 * 3 2 1 5 5 C 1.46899 * 110.99916 * 293.95621 * 4 3 2 6 6 C 1.47202 * 109.47096 * 66.04498 * 5 4 3 7 7 N 2.88940 * 70.20899 * 265.57258 * 2 1 3 8 8 C 1.46902 * 111.00216 * 170.00269 * 4 3 2 9 9 C 1.50699 * 109.46809 * 190.00273 * 8 4 3 10 10 C 1.35071 * 126.07522 * 259.95199 * 9 8 4 11 11 N 1.35049 * 107.98964 * 180.02562 * 10 9 8 12 12 C 1.46498 * 125.92996 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47277 * 125.00613 * 12 11 10 14 14 H 1.08002 * 119.99814 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00295 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99588 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99978 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47413 * 89.99682 * 17 15 13 19 19 H 1.48502 * 109.47123 * 209.99755 * 17 15 13 20 20 H 1.48505 * 109.47208 * 329.99015 * 17 15 13 21 21 N 1.40072 * 108.14140 * 0.02562 * 11 10 9 22 22 C 1.31654 * 108.10023 * 359.97438 * 21 11 10 23 23 C 1.48364 * 126.03615 * 179.97438 * 22 21 11 24 24 C 1.39773 * 120.90397 * 144.75084 * 23 22 21 25 25 C 1.37964 * 119.02400 * 179.75407 * 24 23 22 26 26 N 1.31931 * 120.87590 * 0.53055 * 25 24 23 27 27 C 1.31938 * 122.00819 * 359.74023 * 26 25 24 28 28 C 1.37962 * 120.87881 * 359.97352 * 27 26 25 29 29 H 4.40888 * 5.52190 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47093 * 176.80365 * 3 2 1 31 31 H 1.08999 * 109.47428 * 56.80184 * 3 2 1 32 32 H 1.09002 * 109.47064 * 186.03794 * 5 4 3 33 33 H 1.08999 * 109.47252 * 306.04616 * 5 4 3 34 34 H 1.08997 * 109.46783 * 70.00082 * 8 4 3 35 35 H 1.08997 * 109.46741 * 310.00004 * 8 4 3 36 36 H 1.08002 * 126.00003 * 0.04149 * 10 9 8 37 37 H 1.09000 * 109.47281 * 245.00361 * 12 11 10 38 38 H 1.09004 * 109.46974 * 5.00328 * 12 11 10 39 39 H 0.96999 * 119.99917 * 180.02562 * 16 15 13 40 40 H 1.08002 * 120.48735 * 0.02562 * 24 23 22 41 41 H 1.07992 * 119.56165 * 180.26789 * 25 24 23 42 42 H 1.08004 * 119.56100 * 180.02562 * 27 26 25 43 43 H 1.08003 * 120.48820 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.6236 1.2362 5 6 2.7861 0.1874 2.4100 6 6 1.3240 0.1998 2.5797 7 7 0.1957 0.2099 2.7106 8 6 4.5850 -0.8563 1.1700 9 6 5.0102 -1.7111 2.3359 10 6 5.5837 -1.2714 3.4771 11 7 5.8124 -2.3417 4.2682 12 6 6.4219 -2.3117 5.6001 13 6 5.5028 -2.9823 6.5883 14 1 4.5589 -3.3897 6.2575 15 6 5.8665 -3.0748 7.9151 16 7 7.0157 -2.5783 8.3180 17 14 4.7269 -3.9054 9.1401 18 1 5.0454 -5.3542 9.2089 19 1 4.9110 -3.2939 10.4808 20 1 3.3182 -3.7283 8.7046 21 7 5.3658 -3.4856 3.5943 22 6 4.8811 -3.1107 2.4291 23 6 4.3021 -4.0046 1.3961 24 6 3.2280 -3.5866 0.6054 25 6 2.7231 -4.4476 -0.3471 26 7 3.2339 -5.6533 -0.5087 27 6 4.2439 -6.0883 0.2203 28 6 4.8122 -5.2896 1.1911 29 1 -1.0499 0.0001 0.0003 30 1 3.0089 1.0269 -0.0573 31 1 3.0096 -0.5618 -0.8599 32 1 3.2513 -0.2397 3.2984 33 1 3.1440 1.2070 2.2669 34 1 5.1084 0.0990 1.2096 35 1 4.8288 -1.3658 0.2378 36 1 5.8180 -0.2443 3.7150 37 1 7.3756 -2.8390 5.5752 38 1 6.5865 -1.2771 5.9011 39 1 7.2717 -2.6437 9.2513 40 1 2.8023 -2.6025 0.7352 41 1 1.8962 -4.1320 -0.9658 42 1 4.6314 -7.0827 0.0543 43 1 5.6390 -5.6520 1.7840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336857222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:41 Heat of formation + Delta-G solvation = 197.021713 kcal Electronic energy + Delta-G solvation = -27785.209020 eV Core-core repulsion = 24026.900459 eV Total energy + Delta-G solvation = -3758.308561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16169 -40.62047 -39.34005 -36.92668 -35.80189 -34.46468 -33.98510 -32.45675 -32.12068 -31.46145 -29.63446 -29.13696 -27.29540 -25.73353 -24.29140 -24.20854 -23.21585 -21.40125 -20.69245 -19.13779 -18.71258 -18.63409 -17.91784 -17.23835 -17.03697 -16.84707 -16.35974 -16.25694 -15.87640 -15.76117 -15.33916 -14.81629 -14.71982 -14.60487 -14.37526 -14.15218 -14.07556 -13.93739 -13.73643 -13.61841 -13.36699 -13.24423 -13.00540 -12.75447 -12.64428 -12.50520 -12.44715 -12.23521 -11.76014 -11.44354 -11.19700 -10.91654 -10.82783 -10.72470 -10.39240 -9.99162 -9.80700 -9.36507 -9.10472 -8.35290 -6.47129 0.09751 0.33323 1.20033 1.34212 1.36694 1.44760 1.48198 1.84852 1.89569 2.01341 2.05962 2.25523 2.32718 2.97548 3.00940 3.08454 3.38967 3.58771 3.60662 3.68407 3.90599 4.16395 4.20031 4.29917 4.38335 4.41616 4.49242 4.53108 4.64853 4.75125 4.78212 4.83948 4.90068 4.97157 5.03938 5.10551 5.14611 5.22889 5.24662 5.53652 5.60603 5.77586 5.86761 5.88056 5.94347 6.03374 6.32920 6.65788 6.71865 6.77989 7.04163 7.10329 7.23073 8.72288 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009187 B = 0.003955 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.013745 B = 7078.390222 C = 8650.655319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.199 4.199 3 C 0.159 3.841 4 N -0.545 5.545 5 C 0.145 3.855 6 C 0.231 3.769 7 N -0.479 5.479 8 C 0.150 3.850 9 C -0.231 4.231 10 C 0.058 3.942 11 N -0.345 5.345 12 C 0.272 3.728 13 C -0.544 4.544 14 H 0.047 0.953 15 C 0.026 3.974 16 N -0.916 5.916 17 Si 0.959 3.041 18 H -0.276 1.276 19 H -0.271 1.271 20 H -0.277 1.277 21 N -0.320 5.320 22 C 0.087 3.913 23 C 0.029 3.971 24 C -0.149 4.149 25 C 0.089 3.911 26 N -0.506 5.506 27 C 0.090 3.910 28 C -0.164 4.164 29 H 0.214 0.786 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.207 0.793 37 H 0.019 0.981 38 H 0.064 0.936 39 H 0.272 0.728 40 H 0.178 0.822 41 H 0.177 0.823 42 H 0.176 0.824 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 8.022 -19.400 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.200 4.200 3 C 0.033 3.967 4 N -0.271 5.271 5 C 0.015 3.985 6 C -0.087 4.087 7 N -0.158 5.158 8 C 0.024 3.976 9 C -0.243 4.243 10 C -0.090 4.090 11 N -0.125 5.125 12 C 0.154 3.846 13 C -0.582 4.582 14 H 0.065 0.935 15 C -0.175 4.175 16 N -0.555 5.555 17 Si 0.784 3.216 18 H -0.202 1.202 19 H -0.196 1.196 20 H -0.202 1.202 21 N -0.144 5.144 22 C -0.077 4.077 23 C 0.019 3.981 24 C -0.170 4.170 25 C -0.067 4.067 26 N -0.216 5.216 27 C -0.066 4.066 28 C -0.186 4.186 29 H 0.231 0.769 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.143 0.857 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.224 0.776 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.195 0.805 41 H 0.194 0.806 42 H 0.193 0.807 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.868 6.107 -18.649 20.218 hybrid contribution 0.333 0.980 1.517 1.836 sum -4.535 7.088 -17.132 19.087 Atomic orbital electron populations 1.25257 0.96732 1.01511 0.99031 1.23399 0.95211 0.99942 1.01451 1.19358 0.83238 1.01101 0.92990 1.61636 1.16289 1.47689 1.01484 1.19814 0.81081 1.00673 0.96946 1.29460 0.95714 0.91810 0.91729 1.81127 1.14458 1.10045 1.10154 1.20326 0.83659 0.98511 0.95128 1.19917 1.13255 0.91782 0.99372 1.23040 1.00036 0.95106 0.90807 1.49089 1.44340 1.03915 1.15108 1.19284 0.92424 0.98830 0.74111 1.21361 1.04700 1.38885 0.93290 0.93478 1.25560 0.96691 0.95638 0.99647 1.69959 1.22028 1.45721 1.17821 0.85538 0.78869 0.78781 0.78392 1.20182 1.19557 1.20209 1.77634 1.19208 1.10542 1.07060 1.20767 1.00296 0.94016 0.92591 1.18355 0.94791 0.92282 0.92679 1.22998 0.95047 1.03943 0.95002 1.23054 0.98702 0.88766 0.96211 1.67652 1.10898 1.16753 1.26292 1.22912 0.92020 1.00337 0.91281 1.22331 1.02020 0.94424 0.99781 0.76917 0.88559 0.85646 0.86888 0.85684 0.88982 0.88038 0.77590 0.96302 0.91844 0.91876 0.80475 0.80605 0.80700 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.25 17.05 74.32 1.27 -2.98 16 2 C -0.20 -3.56 10.94 31.12 0.34 -3.22 16 3 C 0.16 1.63 5.29 84.50 0.45 2.07 16 4 N -0.55 -7.73 2.26 -923.06 -2.08 -9.81 16 5 C 0.14 2.23 5.32 84.50 0.45 2.68 16 6 C 0.23 5.49 12.64 89.44 1.13 6.62 16 7 N -0.48 -14.20 16.65 20.01 0.33 -13.87 16 8 C 0.15 1.97 4.39 85.56 0.38 2.34 16 9 C -0.23 -5.67 4.71 -19.95 -0.09 -5.77 16 10 C 0.06 1.63 10.37 83.47 0.87 2.49 16 11 N -0.34 -13.82 3.67 -351.92 -1.29 -15.11 16 12 C 0.27 12.86 6.26 85.63 0.54 13.40 16 13 C -0.54 -29.33 9.23 25.60 0.24 -29.09 16 14 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 15 C 0.03 1.37 5.46 84.66 0.46 1.83 16 16 N -0.92 -50.07 13.29 21.45 0.28 -49.79 16 17 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 N -0.32 -13.53 12.42 -48.17 -0.60 -14.13 16 22 C 0.09 2.87 6.78 42.51 0.29 3.16 16 23 C 0.03 0.86 5.83 -19.84 -0.12 0.74 16 24 C -0.15 -3.65 8.90 22.58 0.20 -3.45 16 25 C 0.09 2.06 11.17 84.61 0.95 3.01 16 26 N -0.51 -13.27 10.35 -196.14 -2.03 -15.30 16 27 C 0.09 2.29 11.17 84.61 0.95 3.24 16 28 C -0.16 -4.75 9.87 22.58 0.22 -4.53 16 29 H 0.21 3.90 7.80 -4.42 -0.03 3.87 16 30 H 0.10 0.47 8.06 -2.38 -0.02 0.45 16 31 H 0.13 0.83 7.93 -2.39 -0.02 0.81 16 32 H 0.11 2.12 6.28 -2.39 -0.01 2.11 16 33 H 0.13 0.89 8.06 -2.39 -0.02 0.87 16 34 H 0.09 0.57 8.12 -2.39 -0.02 0.55 16 35 H 0.10 1.18 7.59 -2.39 -0.02 1.16 16 36 H 0.21 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 2.86 8.07 -2.38 -0.02 2.84 16 39 H 0.27 14.01 8.31 -92.71 -0.77 13.23 16 40 H 0.18 3.92 4.75 -2.91 -0.01 3.90 16 41 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 43 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -73.36 378.02 6.18 -67.17 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.04 Total: 13.00 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 8.50 Total: -7.45 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -5.38 Total: -118.01 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -73.36 6.18 -67.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336857222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 264.196 kcal (2) G-P(sol) polarization free energy of solvation -73.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 197.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds