Wall clock time and date at job start Tue Mar 31 2020 19:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 110.64265 * 2 1 4 4 C 1.54324 * 110.72231 * 236.86470 * 2 1 3 5 5 N 1.47017 * 107.27277 * 263.82594 * 4 2 1 6 6 C 1.34777 * 125.65341 * 181.01725 * 5 4 2 7 7 O 1.21633 * 120.00239 * 180.02562 * 6 5 4 8 8 C 1.47265 * 119.99770 * 359.75365 * 6 5 4 9 9 N 1.33563 * 123.13883 * 359.97438 * 8 6 5 10 10 C 1.28654 * 115.76248 * 179.80468 * 9 8 6 11 11 S 1.70768 * 110.56102 * 0.45008 * 10 9 8 12 12 C 1.35201 * 123.14373 * 180.27392 * 8 6 5 13 13 C 1.50703 * 125.58637 * 359.97438 * 12 8 6 14 14 C 1.52996 * 117.50086 * 188.74824 * 13 12 8 15 15 C 1.53000 * 117.50200 * 120.08559 * 13 12 8 16 16 C 1.47435 * 108.70127 * 1.28425 * 5 4 2 17 17 C 1.55129 * 104.72099 * 335.55384 * 16 5 4 18 18 H 1.08994 * 111.22217 * 279.18071 * 17 16 5 19 19 C 1.52998 * 110.90589 * 155.27619 * 17 16 5 20 20 N 1.46493 * 109.47367 * 72.97439 * 19 17 16 21 21 C 1.36934 * 120.00160 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00189 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99978 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00559 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99939 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47069 * 60.00015 * 25 23 21 27 27 H 1.48503 * 109.47078 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47369 * 300.00101 * 25 23 21 29 29 H 1.09004 * 109.47078 * 181.68748 * 1 2 3 30 30 H 1.09000 * 109.47201 * 301.67916 * 1 2 3 31 31 H 1.08998 * 109.47768 * 61.68854 * 1 2 3 32 32 H 1.09000 * 109.88923 * 144.40796 * 4 2 1 33 33 H 1.09009 * 110.00990 * 23.31484 * 4 2 1 34 34 H 1.08000 * 124.71685 * 180.20477 * 10 9 8 35 35 H 1.09005 * 115.54598 * 334.41997 * 13 12 8 36 36 H 1.08999 * 117.49977 * 359.97438 * 14 13 12 37 37 H 1.09002 * 117.49761 * 145.01830 * 14 13 12 38 38 H 1.08998 * 117.50004 * 214.98176 * 15 13 12 39 39 H 1.08997 * 117.49558 * 359.97438 * 15 13 12 40 40 H 1.08999 * 110.36625 * 94.48143 * 16 5 4 41 41 H 1.08994 * 110.36368 * 216.80270 * 16 5 4 42 42 H 1.09000 * 109.46853 * 192.97846 * 19 17 16 43 43 H 1.09005 * 109.46959 * 312.96883 * 19 17 16 44 44 H 0.97001 * 120.00035 * 359.97438 * 20 19 17 45 45 H 0.96993 * 120.00581 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7890 -1.2087 5 7 2.3716 -2.1517 -0.7429 6 6 2.8850 -3.1451 -1.4954 7 8 3.0891 -4.2382 -1.0025 8 6 3.1931 -2.9087 -2.9159 9 7 2.9887 -1.7363 -3.5221 10 6 3.3121 -1.6862 -4.7664 11 16 3.9169 -3.1949 -5.2900 12 6 3.7039 -3.8599 -3.7297 13 6 4.0318 -5.2747 -3.3272 14 6 4.7909 -6.1384 -4.3365 15 6 3.3084 -6.4043 -4.0632 16 6 2.0076 -2.2536 0.6821 17 6 2.0790 -0.7975 1.2124 18 1 3.1059 -0.5093 1.4368 19 6 1.1816 -0.6183 2.4385 20 7 1.7915 -1.2850 3.5916 21 6 1.1639 -1.2589 4.8085 22 1 0.2191 -0.7472 4.9180 23 6 1.7421 -1.8901 5.9012 24 7 2.8937 -2.5132 5.7680 25 14 0.8864 -1.8539 7.5613 26 1 -0.4494 -2.4920 7.4437 27 1 1.7030 -2.5956 8.5554 28 1 0.7249 -0.4458 8.0044 29 1 -0.3633 -1.0273 0.0303 30 1 -0.3633 0.5397 0.8745 31 1 -0.3634 0.4874 -0.9047 32 1 2.9867 -0.3178 -1.5782 33 1 1.3282 -0.8222 -2.0011 34 1 3.2111 -0.8127 -5.3935 35 1 4.2533 -5.4234 -2.2703 36 1 5.0528 -5.6835 -5.2917 37 1 5.5115 -6.8557 -3.9435 38 1 3.0543 -7.2963 -3.4906 39 1 2.5950 -6.1241 -4.8382 40 1 0.9975 -2.6493 0.7883 41 1 2.7209 -2.8852 1.2116 42 1 1.0663 0.4443 2.6521 43 1 0.2037 -1.0572 2.2403 44 1 2.6395 -1.7455 3.4931 45 1 3.2976 -2.9546 6.5315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484376770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:41 Heat of formation + Delta-G solvation = 53.256209 kcal Electronic energy + Delta-G solvation = -26555.561514 eV Core-core repulsion = 22894.170014 eV Total energy + Delta-G solvation = -3661.391501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83969 -39.29064 -37.78568 -37.36102 -34.60522 -32.74637 -31.09594 -30.74693 -29.07076 -26.86990 -26.32010 -25.01831 -23.44251 -22.75915 -22.38360 -21.98536 -21.26769 -19.20089 -18.95965 -18.32642 -17.06252 -16.57534 -16.29477 -15.87756 -15.48364 -15.01748 -14.69442 -14.61614 -14.43638 -14.13927 -13.78908 -13.38662 -13.17987 -12.87702 -12.55716 -12.44327 -12.32185 -12.28147 -12.04864 -11.90414 -11.64922 -11.50805 -11.33357 -10.99091 -10.86825 -10.78194 -10.51165 -10.32699 -10.25903 -10.08480 -9.88689 -9.72520 -9.62100 -9.60602 -9.12708 -8.82478 -8.40406 -6.87733 -5.71347 -3.00468 0.22879 0.88993 1.31327 1.83759 3.12037 3.29210 3.47493 3.51545 3.52900 3.61941 3.86723 4.18402 4.48741 4.56381 4.65836 4.67528 4.73279 4.89527 4.97307 5.06963 5.24757 5.28681 5.38799 5.51425 5.56974 5.59990 5.65250 5.67508 5.75721 5.76869 5.97312 6.00242 6.03144 6.06550 6.14808 6.24413 6.28521 6.42692 6.48996 6.54815 6.75649 6.89839 7.14786 7.64741 7.73427 8.22689 8.47046 9.58011 10.15875 10.50202 11.51366 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.002659 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.909215 B =10527.660025 C =11766.047320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.087 0.913 4 C 0.122 3.878 5 N -0.599 5.599 6 C 0.603 3.397 7 O -0.531 6.531 8 C 0.006 3.994 9 N -0.429 5.429 10 C -0.010 4.010 11 S 0.194 5.806 12 C -0.147 4.147 13 C -0.088 4.088 14 C -0.177 4.177 15 C -0.159 4.159 16 C 0.118 3.882 17 C -0.101 4.101 18 H 0.085 0.915 19 C 0.166 3.834 20 N -0.734 5.734 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.204 0.796 35 H 0.150 0.850 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 0.197 -28.618 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.001 4.001 5 N -0.331 5.331 6 C 0.389 3.611 7 O -0.409 6.409 8 C -0.128 4.128 9 N -0.143 5.143 10 C -0.310 4.310 11 S 0.450 5.550 12 C -0.271 4.271 13 C -0.109 4.109 14 C -0.215 4.215 15 C -0.197 4.197 16 C -0.004 4.004 17 C -0.121 4.121 18 H 0.103 0.897 19 C 0.038 3.962 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.221 0.779 35 H 0.168 0.832 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.921 -0.223 -28.942 29.006 hybrid contribution -0.374 -0.005 1.738 1.778 sum 1.547 -0.228 -27.203 27.248 Atomic orbital electron populations 1.21825 0.94238 1.02230 1.01680 1.22273 0.96542 0.99249 0.94068 0.89437 1.22139 1.00574 0.81264 0.96130 1.48308 1.61178 1.11739 1.11893 1.16603 0.77828 0.83500 0.83190 1.90774 1.54285 1.23366 1.72443 1.20301 1.06754 0.88874 0.96857 1.67166 1.16423 1.22990 1.07742 1.28376 1.04360 1.02735 0.95490 1.82755 1.57648 1.05538 1.09080 1.24800 1.04091 1.00746 0.97482 1.20744 1.05328 0.84281 1.00500 1.23171 0.95426 1.03172 0.99717 1.23084 0.94756 0.99363 1.02508 1.22420 1.01251 0.98025 0.78702 1.22651 1.01138 0.93419 0.94871 0.89687 1.20632 0.94154 0.95909 0.85493 1.42388 1.25648 1.64440 1.05305 1.19163 1.02957 1.28389 0.86641 0.91248 1.24742 0.97303 1.00794 0.98098 1.69648 1.18064 1.40020 1.30360 0.86274 0.78533 0.77386 0.84017 1.21292 1.21718 1.21310 0.92490 0.91578 0.92971 0.91109 0.91015 0.77900 0.83225 0.88741 0.87519 0.87556 0.88686 0.90968 0.89816 0.95876 0.95717 0.78267 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.91 37.15 0.29 -1.45 16 2 C -0.10 -1.33 3.47 -88.79 -0.31 -1.64 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.61 5.04 -3.07 -0.02 1.59 16 5 N -0.60 -9.58 3.33 -171.70 -0.57 -10.15 16 6 C 0.60 10.12 7.83 -12.59 -0.10 10.02 16 7 O -0.53 -10.20 14.41 5.25 0.08 -10.13 16 8 C 0.01 0.09 6.62 -84.53 -0.56 -0.47 16 9 N -0.43 -5.01 7.65 -12.36 -0.09 -5.11 16 10 C -0.01 -0.08 12.17 51.43 0.63 0.54 16 11 S 0.19 1.44 21.77 -107.50 -2.34 -0.90 16 12 C -0.15 -1.70 6.04 -35.39 -0.21 -1.91 16 13 C -0.09 -0.99 5.40 -91.77 -0.50 -1.49 16 14 C -0.18 -1.42 10.03 -26.69 -0.27 -1.69 16 15 C -0.16 -1.42 10.24 -26.69 -0.27 -1.69 16 16 C 0.12 2.07 6.01 -2.40 -0.01 2.06 16 17 C -0.10 -1.68 2.93 -88.35 -0.26 -1.94 16 18 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 19 C 0.17 3.31 4.54 -4.05 -0.02 3.29 16 20 N -0.73 -18.81 5.55 -59.91 -0.33 -19.14 16 21 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 22 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 25 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 29 H 0.06 0.76 7.32 -51.93 -0.38 0.38 16 30 H 0.07 0.83 7.12 -51.93 -0.37 0.46 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.92 7.54 -51.93 -0.39 0.52 16 33 H 0.07 0.91 7.33 -51.92 -0.38 0.53 16 34 H 0.20 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.15 2.08 6.17 -51.93 -0.32 1.76 16 36 H 0.09 0.63 7.28 -51.93 -0.38 0.25 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.31 7.46 -51.93 -0.39 0.92 16 41 H 0.08 1.68 8.03 -51.93 -0.42 1.26 16 42 H 0.02 0.46 8.05 -51.93 -0.42 0.05 16 43 H 0.03 0.50 6.94 -51.93 -0.36 0.14 16 44 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -33.70 374.30 -10.39 -44.09 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.62 Total: 8.26 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.85 Total: -2.23 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.27 Total: -62.48 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.34 Total: -0.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.70 -10.39 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484376770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.346 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds