Wall clock time and date at job start Tue Mar 31 2020 19:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.88828 * 2 1 4 4 C 1.55131 * 110.93991 * 124.08239 * 2 1 3 5 5 N 1.47427 * 104.72398 * 155.28693 * 4 2 1 6 6 C 1.34776 * 125.64826 * 155.81835 * 5 4 2 7 7 O 1.21282 * 119.99940 * 179.69354 * 6 5 4 8 8 C 1.50698 * 120.00035 * 359.68469 * 6 5 4 9 9 S 1.81000 * 109.47349 * 180.02562 * 8 6 5 10 10 C 1.76194 * 100.00068 * 180.02562 * 9 8 6 11 11 H 1.08006 * 120.00457 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31640 * 119.99650 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00461 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47142 * 119.99526 * 14 12 10 17 17 H 1.48498 * 109.47657 * 239.99984 * 14 12 10 18 18 C 1.47024 * 108.69878 * 335.54845 * 5 4 2 19 19 C 1.54317 * 107.27283 * 1.29168 * 18 5 4 20 20 H 1.08997 * 110.72082 * 140.55504 * 19 18 5 21 21 N 1.46905 * 110.72010 * 263.64854 * 19 18 5 22 22 C 1.46907 * 110.99712 * 273.55009 * 21 19 18 23 23 C 1.50703 * 109.46489 * 179.97438 * 22 21 19 24 24 C 1.38233 * 119.61704 * 94.73345 * 23 22 21 25 25 C 1.38622 * 119.15985 * 179.75430 * 24 23 22 26 26 C 1.38673 * 118.42105 * 0.49686 * 25 24 23 27 27 C 1.38183 * 119.16368 * 359.74171 * 26 25 24 28 28 N 1.31853 * 119.61812 * 274.99419 * 23 22 21 29 29 H 1.08995 * 109.47172 * 183.87789 * 1 2 3 30 30 H 1.09002 * 109.46801 * 303.87906 * 1 2 3 31 31 H 1.08999 * 109.47075 * 63.87597 * 1 2 3 32 32 H 1.08999 * 110.49634 * 36.43871 * 4 2 1 33 33 H 1.09002 * 110.33994 * 274.05186 * 4 2 1 34 34 H 1.09001 * 109.47122 * 60.00223 * 8 6 5 35 35 H 1.09004 * 109.47371 * 300.00514 * 8 6 5 36 36 H 0.97001 * 119.99781 * 180.02562 * 13 12 10 37 37 H 1.09010 * 109.87781 * 120.70962 * 18 5 4 38 38 H 1.08998 * 109.88460 * 241.86460 * 18 5 4 39 39 H 1.00899 * 110.99425 * 37.49751 * 21 19 18 40 40 H 1.08996 * 109.46927 * 299.99627 * 22 21 19 41 41 H 1.09002 * 109.47038 * 60.00111 * 22 21 19 42 42 H 1.07995 * 120.41683 * 359.97006 * 24 23 22 43 43 H 1.07996 * 120.78735 * 180.21476 * 25 24 23 44 44 H 1.08005 * 120.42162 * 179.71163 * 26 25 24 45 45 H 1.07998 * 119.61978 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0845 -0.8119 1.2000 5 7 3.4281 -1.2423 0.7724 6 6 4.4491 -1.5606 1.5926 7 8 5.5141 -1.9086 1.1284 8 6 4.2674 -1.4838 3.0867 9 16 5.8063 -1.9677 3.9073 10 6 5.3226 -1.7924 5.5925 11 1 4.3217 -1.4679 5.8362 12 6 6.2283 -2.0703 6.6070 13 7 7.4484 -2.4654 6.3101 14 14 5.7158 -1.8838 8.3935 15 1 4.3035 -1.4293 8.4586 16 1 5.8479 -3.1911 9.0855 17 1 6.5886 -0.8822 9.0570 18 6 3.4678 -1.2732 -0.6970 19 6 2.0861 -0.8075 -1.2025 20 1 2.1915 -0.1693 -2.0799 21 7 1.2263 -1.9605 -1.5012 22 6 1.4468 -2.4405 -2.8720 23 6 0.5499 -3.6214 -3.1410 24 6 -0.6747 -3.4242 -3.7512 25 6 -1.4899 -4.5177 -3.9987 26 6 -1.0455 -5.7731 -3.6122 27 6 0.1887 -5.8923 -3.0023 28 7 0.9401 -4.8300 -2.7869 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3633 0.5729 0.8532 31 1 -0.3633 0.4525 -0.9227 32 1 1.4537 -1.6784 1.3985 33 1 2.1524 -0.1803 2.0858 34 1 3.4659 -2.1573 3.3903 35 1 4.0107 -0.4628 3.3695 36 1 8.0812 -2.6600 7.0190 37 1 4.2426 -0.5983 -1.0611 38 1 3.6658 -2.2882 -1.0413 39 1 1.3694 -2.7013 -0.8313 40 1 1.2181 -1.6420 -3.5778 41 1 2.4879 -2.7415 -2.9886 42 1 -0.9907 -2.4312 -4.0346 43 1 -2.4502 -4.3943 -4.4771 44 1 -1.6565 -6.6468 -3.7851 45 1 0.5418 -6.8664 -2.6978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484879451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:14 Heat of formation + Delta-G solvation = 5.029779 kcal Electronic energy + Delta-G solvation = -25661.154048 eV Core-core repulsion = 21997.671292 eV Total energy + Delta-G solvation = -3663.482755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.60151 -40.01959 -37.89353 -35.21114 -32.89241 -32.62438 -32.40815 -31.56486 -29.96646 -27.89328 -26.34098 -25.72758 -25.39680 -23.85092 -22.75580 -22.10300 -20.05440 -19.31927 -17.71805 -17.34760 -16.82731 -16.60254 -16.23348 -16.01163 -15.43159 -15.18537 -14.78996 -14.73298 -14.30991 -14.07999 -13.78290 -13.66344 -13.50509 -13.25338 -13.12388 -12.88616 -12.63624 -12.48821 -12.24574 -12.10197 -11.95743 -11.72964 -11.48873 -11.05754 -10.99985 -10.97090 -10.84610 -10.72662 -10.23343 -9.78747 -9.77365 -9.42869 -9.36291 -9.05699 -8.76462 -8.45374 -8.20487 -6.48166 -6.19991 -3.90355 0.73765 0.94048 2.94245 3.09895 3.22806 3.27673 3.32589 3.34535 3.64535 3.82190 4.06846 4.21808 4.28726 4.33863 4.43026 4.51727 4.71436 4.76740 4.78048 5.00413 5.06441 5.13007 5.14762 5.15305 5.21377 5.34291 5.38081 5.42788 5.46773 5.53984 5.59563 5.72221 5.77518 5.79759 5.82048 5.87370 5.91862 5.98547 6.16541 6.25436 6.33520 6.43711 6.62991 6.98496 7.61564 7.67344 7.70230 8.37276 8.59428 9.25314 10.87532 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002228 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.995783 B =12566.394665 C =13030.480206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.094 4.094 3 H 0.088 0.912 4 C 0.102 3.898 5 N -0.625 5.625 6 C 0.547 3.453 7 O -0.516 6.516 8 C -0.145 4.145 9 S -0.062 6.062 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.080 3.920 19 C 0.080 3.920 20 H 0.099 0.901 21 N -0.668 5.668 22 C 0.106 3.894 23 C 0.131 3.869 24 C -0.152 4.152 25 C -0.078 4.078 26 C -0.175 4.175 27 C 0.101 3.899 28 N -0.479 5.479 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.351 0.649 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.528 1.010 -22.023 30.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.114 4.114 3 H 0.106 0.894 4 C -0.021 4.021 5 N -0.362 5.362 6 C 0.336 3.664 7 O -0.390 6.390 8 C -0.296 4.296 9 S 0.165 5.835 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.045 4.045 19 C -0.031 4.031 20 H 0.117 0.883 21 N -0.299 5.299 22 C -0.023 4.023 23 C -0.007 4.007 24 C -0.172 4.172 25 C -0.104 4.104 26 C -0.195 4.195 27 C -0.056 4.056 28 N -0.189 5.189 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.171 0.829 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.411 0.694 -22.356 29.615 hybrid contribution -1.548 0.040 1.373 2.070 sum -20.958 0.734 -20.983 29.666 Atomic orbital electron populations 1.21461 0.92885 1.02744 1.01088 1.22445 0.97155 0.98519 0.93232 0.89377 1.22471 0.83315 0.98367 0.97944 1.48467 1.12553 1.69366 1.05830 1.20046 0.82285 0.75977 0.88094 1.90708 1.25548 1.45613 1.77173 1.23497 1.07728 1.05018 0.93349 1.85406 1.09050 1.87788 1.01266 1.22898 1.01338 1.52821 0.91094 0.90888 1.25003 0.94510 0.94582 0.99570 1.70037 1.04312 1.42673 1.33275 0.86110 0.78658 0.77983 0.82701 1.19609 1.20562 1.20573 1.22628 0.98443 1.01711 0.81716 1.22661 0.89161 0.92757 0.98533 0.88311 1.60596 1.55755 1.10520 1.03020 1.20840 0.96897 0.92951 0.91612 1.21118 0.93143 0.92420 0.94010 1.21940 0.94842 1.00045 1.00375 1.21605 0.99491 0.92544 0.96772 1.22168 0.98089 0.98525 1.00755 1.22771 0.90827 0.97412 0.94585 1.67512 1.35193 0.98939 1.17212 0.91372 0.93233 0.92451 0.91287 0.90346 0.89346 0.89329 0.92255 0.91198 0.91618 0.82932 0.89245 0.92874 0.84699 0.84884 0.84851 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 8.86 37.16 0.33 -0.58 16 2 C -0.09 -0.80 3.57 -88.35 -0.32 -1.12 16 3 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.10 1.15 6.07 -2.41 -0.01 1.14 16 5 N -0.62 -9.30 3.32 -170.38 -0.57 -9.87 16 6 C 0.55 11.00 7.87 -10.99 -0.09 10.91 16 7 O -0.52 -12.46 16.19 5.56 0.09 -12.37 16 8 C -0.15 -3.08 5.16 36.00 0.19 -2.90 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 10 C -0.53 -15.43 9.50 30.94 0.29 -15.13 16 11 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.51 13.22 55.49 0.73 -25.77 16 14 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.08 0.98 6.32 -3.07 -0.02 0.97 16 19 C 0.08 0.68 3.01 -65.88 -0.20 0.48 16 20 H 0.10 0.69 7.89 -51.93 -0.41 0.28 16 21 N -0.67 -5.63 4.90 -106.05 -0.52 -6.15 16 22 C 0.11 0.84 5.81 -4.97 -0.03 0.81 16 23 C 0.13 1.18 6.29 -82.58 -0.52 0.66 16 24 C -0.15 -1.08 9.72 -39.44 -0.38 -1.46 16 25 C -0.08 -0.49 10.18 -39.28 -0.40 -0.89 16 26 C -0.18 -1.15 10.11 -39.44 -0.40 -1.55 16 27 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 28 N -0.48 -5.09 10.27 -9.47 -0.10 -5.19 16 29 H 0.07 0.56 7.37 -51.93 -0.38 0.17 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.75 7.99 -51.93 -0.41 0.34 16 33 H 0.08 0.88 7.48 -51.93 -0.39 0.50 16 34 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 35 H 0.09 1.74 7.85 -51.91 -0.41 1.33 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.07 0.89 7.69 -51.93 -0.40 0.49 16 39 H 0.35 3.65 8.41 -39.29 -0.33 3.32 16 40 H 0.09 0.53 7.99 -51.93 -0.41 0.12 16 41 H 0.05 0.48 7.83 -51.93 -0.41 0.08 16 42 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 45 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -35.76 388.07 -10.50 -46.26 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.90 Total: 0.54 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -1.85 Total: -6.00 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.45 Total: -46.97 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.76 -10.50 -46.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484879451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.286 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds