Wall clock time and date at job start Tue Mar 31 2020 19:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.88828 * 2 1 4 4 C 1.55131 * 110.93991 * 124.08239 * 2 1 3 5 5 N 1.47427 * 104.72398 * 155.28693 * 4 2 1 6 6 C 1.34776 * 125.64826 * 155.81835 * 5 4 2 7 7 O 1.21282 * 119.99940 * 179.69354 * 6 5 4 8 8 C 1.50698 * 120.00035 * 359.68469 * 6 5 4 9 9 S 1.81000 * 109.47349 * 180.02562 * 8 6 5 10 10 C 1.76194 * 100.00068 * 180.02562 * 9 8 6 11 11 H 1.08006 * 120.00457 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31640 * 119.99650 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00461 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47142 * 119.99526 * 14 12 10 17 17 H 1.48498 * 109.47657 * 239.99984 * 14 12 10 18 18 C 1.47024 * 108.69878 * 335.54845 * 5 4 2 19 19 C 1.54317 * 107.27283 * 1.29168 * 18 5 4 20 20 H 1.08997 * 110.72082 * 140.55504 * 19 18 5 21 21 N 1.46905 * 110.72010 * 263.64854 * 19 18 5 22 22 C 1.46907 * 110.99712 * 273.55009 * 21 19 18 23 23 C 1.50703 * 109.46489 * 179.97438 * 22 21 19 24 24 C 1.38233 * 119.61704 * 94.73345 * 23 22 21 25 25 C 1.38622 * 119.15985 * 179.75430 * 24 23 22 26 26 C 1.38673 * 118.42105 * 0.49686 * 25 24 23 27 27 C 1.38183 * 119.16368 * 359.74171 * 26 25 24 28 28 N 1.31853 * 119.61812 * 274.99419 * 23 22 21 29 29 H 1.08995 * 109.47172 * 183.87789 * 1 2 3 30 30 H 1.09002 * 109.46801 * 303.87906 * 1 2 3 31 31 H 1.08999 * 109.47075 * 63.87597 * 1 2 3 32 32 H 1.08999 * 110.49634 * 36.43871 * 4 2 1 33 33 H 1.09002 * 110.33994 * 274.05186 * 4 2 1 34 34 H 1.09001 * 109.47122 * 60.00223 * 8 6 5 35 35 H 1.09004 * 109.47371 * 300.00514 * 8 6 5 36 36 H 0.97001 * 119.99781 * 180.02562 * 13 12 10 37 37 H 1.09010 * 109.87781 * 120.70962 * 18 5 4 38 38 H 1.08998 * 109.88460 * 241.86460 * 18 5 4 39 39 H 1.00899 * 110.99425 * 37.49751 * 21 19 18 40 40 H 1.08996 * 109.46927 * 299.99627 * 22 21 19 41 41 H 1.09002 * 109.47038 * 60.00111 * 22 21 19 42 42 H 1.07995 * 120.41683 * 359.97006 * 24 23 22 43 43 H 1.07996 * 120.78735 * 180.21476 * 25 24 23 44 44 H 1.08005 * 120.42162 * 179.71163 * 26 25 24 45 45 H 1.07998 * 119.61978 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0845 -0.8119 1.2000 5 7 3.4281 -1.2423 0.7724 6 6 4.4491 -1.5606 1.5926 7 8 5.5141 -1.9086 1.1284 8 6 4.2674 -1.4838 3.0867 9 16 5.8063 -1.9677 3.9073 10 6 5.3226 -1.7924 5.5925 11 1 4.3217 -1.4679 5.8362 12 6 6.2283 -2.0703 6.6070 13 7 7.4484 -2.4654 6.3101 14 14 5.7158 -1.8838 8.3935 15 1 4.3035 -1.4293 8.4586 16 1 5.8479 -3.1911 9.0855 17 1 6.5886 -0.8822 9.0570 18 6 3.4678 -1.2732 -0.6970 19 6 2.0861 -0.8075 -1.2025 20 1 2.1915 -0.1693 -2.0799 21 7 1.2263 -1.9605 -1.5012 22 6 1.4468 -2.4405 -2.8720 23 6 0.5499 -3.6214 -3.1410 24 6 -0.6747 -3.4242 -3.7512 25 6 -1.4899 -4.5177 -3.9987 26 6 -1.0455 -5.7731 -3.6122 27 6 0.1887 -5.8923 -3.0023 28 7 0.9401 -4.8300 -2.7869 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3633 0.5729 0.8532 31 1 -0.3633 0.4525 -0.9227 32 1 1.4537 -1.6784 1.3985 33 1 2.1524 -0.1803 2.0858 34 1 3.4659 -2.1573 3.3903 35 1 4.0107 -0.4628 3.3695 36 1 8.0812 -2.6600 7.0190 37 1 4.2426 -0.5983 -1.0611 38 1 3.6658 -2.2882 -1.0413 39 1 1.3694 -2.7013 -0.8313 40 1 1.2181 -1.6420 -3.5778 41 1 2.4879 -2.7415 -2.9886 42 1 -0.9907 -2.4312 -4.0346 43 1 -2.4502 -4.3943 -4.4771 44 1 -1.6565 -6.6468 -3.7851 45 1 0.5418 -6.8664 -2.6978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484879451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:13 Heat of formation + Delta-G solvation = -19.423695 kcal Electronic energy + Delta-G solvation = -25662.214430 eV Core-core repulsion = 21997.671292 eV Total energy + Delta-G solvation = -3664.543138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39538 -40.96000 -39.18939 -36.07624 -34.60876 -33.77949 -33.25984 -32.24964 -31.33140 -28.99500 -27.69012 -27.20786 -26.37958 -24.39870 -23.72419 -22.67250 -20.86735 -20.74118 -19.61847 -18.25352 -17.79745 -17.44943 -17.18341 -16.91046 -16.82093 -16.51544 -16.24172 -15.85467 -15.51854 -15.19955 -14.89113 -14.59570 -14.49797 -14.21757 -14.08732 -13.79160 -13.67523 -13.54019 -13.24779 -13.21694 -13.08841 -12.92727 -12.82337 -12.60916 -12.48470 -12.22480 -11.76901 -11.68526 -11.51368 -11.17751 -11.01102 -10.77840 -10.35795 -10.31314 -9.98128 -9.78189 -9.43744 -8.71345 -8.36827 -6.16086 0.19508 0.41723 1.21248 1.40551 1.43008 1.50891 1.55943 2.05464 2.25017 2.74680 2.97279 3.17659 3.23641 3.40774 3.46657 3.60643 3.82119 3.87715 4.01871 4.07113 4.19940 4.21253 4.26074 4.29417 4.32582 4.39500 4.53211 4.57411 4.60859 4.68389 4.75230 4.79629 4.83918 4.91527 4.97537 5.24478 5.27311 5.30103 5.32295 5.33261 5.39657 5.66896 5.82473 5.94941 6.16940 6.17935 6.33411 7.04044 7.06222 7.10480 8.72896 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002228 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.995783 B =12566.394665 C =13030.480206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.082 4.082 3 H 0.099 0.901 4 C 0.092 3.908 5 N -0.614 5.614 6 C 0.543 3.457 7 O -0.569 6.569 8 C -0.118 4.118 9 S -0.152 6.152 10 C -0.544 4.544 11 H 0.083 0.917 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 1.002 2.998 15 H -0.256 1.256 16 H -0.273 1.273 17 H -0.272 1.272 18 C 0.076 3.924 19 C 0.094 3.906 20 H 0.127 0.873 21 N -0.657 5.657 22 C 0.109 3.891 23 C 0.110 3.890 24 C -0.152 4.152 25 C -0.080 4.080 26 C -0.173 4.173 27 C 0.077 3.923 28 N -0.520 5.520 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.272 0.728 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.338 0.662 40 H 0.115 0.885 41 H 0.033 0.967 42 H 0.158 0.842 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.349 2.479 -22.497 33.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.101 4.101 3 H 0.117 0.883 4 C -0.030 4.030 5 N -0.348 5.348 6 C 0.332 3.668 7 O -0.448 6.448 8 C -0.269 4.269 9 S 0.075 5.925 10 C -0.692 4.692 11 H 0.101 0.899 12 C -0.193 4.193 13 N -0.548 5.548 14 Si 0.823 3.177 15 H -0.179 1.179 16 H -0.199 1.199 17 H -0.198 1.198 18 C -0.049 4.049 19 C -0.017 4.017 20 H 0.145 0.855 21 N -0.287 5.287 22 C -0.020 4.020 23 C -0.028 4.028 24 C -0.172 4.172 25 C -0.106 4.106 26 C -0.192 4.192 27 C -0.080 4.080 28 N -0.230 5.230 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.156 0.844 40 H 0.133 0.867 41 H 0.052 0.948 42 H 0.175 0.825 43 H 0.181 0.819 44 H 0.176 0.824 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.300 2.183 -22.869 32.721 hybrid contribution -0.463 -0.445 1.374 1.516 sum -23.763 1.739 -21.495 32.090 Atomic orbital electron populations 1.21401 0.91352 1.02503 1.02107 1.22444 0.98109 0.98340 0.91231 0.88269 1.22820 0.81296 0.99234 0.99639 1.48407 1.12663 1.66973 1.06766 1.19836 0.82736 0.76207 0.88048 1.90683 1.27888 1.48472 1.77770 1.23284 1.03781 1.06059 0.93743 1.85602 1.15003 1.88711 1.03214 1.23209 1.01888 1.53034 0.91067 0.89908 1.26179 0.94308 0.93751 1.05046 1.70202 1.05788 1.43723 1.35113 0.84865 0.78964 0.78222 0.75638 1.17946 1.19863 1.19775 1.22872 1.01168 1.00891 0.79922 1.22695 0.86494 0.93017 0.99494 0.85542 1.60676 1.54926 1.10017 1.03046 1.20912 0.95813 0.93643 0.91666 1.21316 0.94299 0.92100 0.95077 1.22209 0.94030 1.01486 0.99447 1.22024 1.00446 0.92019 0.96090 1.22464 0.97391 0.99874 0.99518 1.23053 0.91894 0.97409 0.95602 1.67450 1.36722 1.00121 1.18717 0.92175 0.92586 0.91101 0.90644 0.89910 0.87868 0.87432 0.91943 0.91611 0.93370 0.84387 0.86657 0.94835 0.82466 0.81929 0.82380 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 8.86 71.98 0.64 -0.66 16 2 C -0.08 -1.15 3.57 -9.32 -0.03 -1.19 16 3 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 4 C 0.09 1.91 6.07 86.93 0.53 2.44 16 5 N -0.61 -18.13 3.32 -811.34 -2.70 -20.83 16 6 C 0.54 22.37 7.87 87.66 0.69 23.06 16 7 O -0.57 -28.88 16.19 -3.04 -0.05 -28.93 16 8 C -0.12 -5.03 5.16 71.24 0.37 -4.67 16 9 S -0.15 -8.83 20.57 -56.49 -1.16 -9.99 16 10 C -0.54 -31.84 9.50 67.95 0.65 -31.20 16 11 H 0.08 4.51 7.80 -2.91 -0.02 4.48 16 12 C 0.01 0.68 5.49 84.86 0.47 1.15 16 13 N -0.91 -57.06 13.22 21.65 0.29 -56.77 16 14 Si 1.00 44.29 29.55 68.60 2.03 46.31 16 15 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 18 C 0.08 1.86 6.32 86.73 0.55 2.40 16 19 C 0.09 1.40 3.01 46.10 0.14 1.54 16 20 H 0.13 1.30 7.89 -2.39 -0.02 1.28 16 21 N -0.66 -10.04 4.90 -489.43 -2.40 -12.44 16 22 C 0.11 1.60 5.81 85.56 0.50 2.10 16 23 C 0.11 1.88 6.29 42.56 0.27 2.15 16 24 C -0.15 -1.81 9.72 22.36 0.22 -1.59 16 25 C -0.08 -0.79 10.18 22.47 0.23 -0.56 16 26 C -0.17 -1.98 10.11 22.36 0.23 -1.76 16 27 C 0.08 1.30 11.18 84.67 0.95 2.25 16 28 N -0.52 -11.26 10.27 -183.88 -1.89 -13.15 16 29 H 0.06 0.80 7.37 -2.39 -0.02 0.78 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.08 1.52 7.99 -2.39 -0.02 1.50 16 33 H 0.08 1.68 7.48 -2.39 -0.02 1.67 16 34 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 35 H 0.11 4.16 7.85 -2.39 -0.02 4.14 16 36 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.05 1.36 7.69 -2.39 -0.02 1.35 16 39 H 0.34 6.87 8.41 -89.69 -0.75 6.12 16 40 H 0.12 1.06 7.99 -2.39 -0.02 1.04 16 41 H 0.03 0.62 7.83 -2.39 -0.02 0.60 16 42 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 44 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -82.10 388.07 0.72 -81.38 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.23 Total: 18.95 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 6.37 Total: -4.53 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -6.70 Total: -103.19 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.05 Total: -28.93 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -82.10 0.72 -81.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484879451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.957 kcal (2) G-P(sol) polarization free energy of solvation -82.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds