Wall clock time and date at job start Tue Mar 31 2020 19:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64505 * 2 1 4 4 C 1.54322 * 110.72195 * 236.85847 * 2 1 3 5 5 N 1.47024 * 107.27028 * 263.82946 * 4 2 1 6 6 C 1.34771 * 125.64941 * 181.02024 * 5 4 2 7 7 O 1.21289 * 120.00201 * 180.02562 * 6 5 4 8 8 C 1.50704 * 120.00220 * 0.02562 * 6 5 4 9 9 S 1.80998 * 109.47205 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99645 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00111 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00093 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00020 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 90.00077 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00257 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00251 * 14 12 10 18 18 C 1.47431 * 108.70378 * 1.28475 * 5 4 2 19 19 C 1.55131 * 104.71883 * 335.55425 * 18 5 4 20 20 H 1.09002 * 111.22546 * 279.17259 * 19 18 5 21 21 N 1.46901 * 110.90392 * 155.27339 * 19 18 5 22 22 C 1.46899 * 110.99865 * 92.97154 * 21 19 18 23 23 C 1.50702 * 109.47127 * 179.97438 * 22 21 19 24 24 C 1.38233 * 119.61382 * 94.73420 * 23 22 21 25 25 C 1.38625 * 119.15919 * 179.71101 * 24 23 22 26 26 C 1.38672 * 118.42037 * 0.55251 * 25 24 23 27 27 C 1.38177 * 119.16331 * 359.72660 * 26 25 24 28 28 N 1.31853 * 119.62291 * 275.00075 * 23 22 21 29 29 H 1.09001 * 109.47114 * 181.69185 * 1 2 3 30 30 H 1.08996 * 109.46905 * 301.68907 * 1 2 3 31 31 H 1.09005 * 109.46947 * 61.68671 * 1 2 3 32 32 H 1.08993 * 109.88592 * 144.41469 * 4 2 1 33 33 H 1.08995 * 110.00870 * 23.31913 * 4 2 1 34 34 H 1.09004 * 109.46909 * 59.99989 * 8 6 5 35 35 H 1.08994 * 109.46860 * 300.00327 * 8 6 5 36 36 H 0.96993 * 120.00092 * 359.97438 * 13 12 10 37 37 H 1.08997 * 110.36218 * 94.47838 * 18 5 4 38 38 H 1.08991 * 110.36680 * 216.80539 * 18 5 4 39 39 H 1.00897 * 111.00067 * 216.92583 * 21 19 18 40 40 H 1.08991 * 109.47838 * 300.00444 * 22 21 19 41 41 H 1.09002 * 109.47009 * 60.00056 * 22 21 19 42 42 H 1.08000 * 120.41926 * 359.97438 * 24 23 22 43 43 H 1.08003 * 120.79343 * 180.25257 * 25 24 23 44 44 H 1.08006 * 120.41791 * 179.71369 * 26 25 24 45 45 H 1.08006 * 119.62170 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 2.3716 -2.1519 -0.7426 6 6 2.8849 -3.1452 -1.4950 7 8 3.0884 -4.2352 -1.0034 8 6 3.2062 -2.9018 -2.9471 9 16 3.8760 -4.4156 -3.6789 10 6 4.1552 -3.8607 -5.3278 11 1 3.9157 -2.8443 -5.6034 12 6 4.6838 -4.7297 -6.2723 13 7 4.9760 -5.9684 -5.9363 14 14 4.9804 -4.1413 -8.0202 15 1 6.3526 -3.5840 -8.1288 16 1 3.9902 -3.0890 -8.3631 17 1 4.8342 -5.2830 -8.9585 18 6 2.0075 -2.2536 0.6824 19 6 2.0790 -0.7974 1.2125 20 1 3.1059 -0.5092 1.4371 21 7 1.2173 -0.6253 2.3897 22 6 1.9720 -0.8433 3.6309 23 6 1.0573 -0.6579 4.8142 24 6 0.4380 -1.7577 5.3777 25 6 -0.3968 -1.5771 6.4696 26 6 -0.5874 -0.2899 6.9489 27 6 0.0609 0.7618 6.3301 28 7 0.8529 0.5520 5.2966 29 1 -0.3633 -1.0272 0.0303 30 1 -0.3633 0.5398 0.8744 31 1 -0.3633 0.4874 -0.9048 32 1 2.9868 -0.3180 -1.5780 33 1 1.3283 -0.8223 -2.0009 34 1 3.9434 -2.1029 -3.0271 35 1 2.2983 -2.6127 -3.4765 36 1 4.8224 -6.2738 -5.0287 37 1 0.9974 -2.6492 0.7884 38 1 2.7207 -2.8851 1.2120 39 1 0.7796 0.2838 2.3875 40 1 2.3752 -1.8559 3.6380 41 1 2.7907 -0.1260 3.6891 42 1 0.6057 -2.7458 4.9751 43 1 -0.8908 -2.4183 6.9330 44 1 -1.2346 -0.1116 7.7950 45 1 -0.0819 1.7674 6.6976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484879453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:19 Heat of formation + Delta-G solvation = -23.967587 kcal Electronic energy + Delta-G solvation = -25403.084166 eV Core-core repulsion = 21738.343991 eV Total energy + Delta-G solvation = -3664.740176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40397 -41.01758 -39.25183 -36.37771 -34.75527 -33.81222 -33.28478 -32.09467 -31.47501 -28.97315 -27.58279 -27.10534 -26.48936 -24.40110 -23.76680 -22.64866 -20.95809 -20.81386 -20.15163 -18.31947 -17.81677 -17.59220 -17.19141 -17.05056 -16.57023 -16.30178 -16.05599 -15.92239 -15.68503 -15.39550 -14.89879 -14.66024 -14.56219 -14.26373 -14.15889 -14.13256 -13.84812 -13.68035 -13.54112 -13.40148 -13.14741 -13.06233 -12.74857 -12.49589 -12.04832 -11.94013 -11.81743 -11.65956 -11.57011 -11.10962 -11.08671 -10.80436 -10.41930 -10.33893 -9.99367 -9.80180 -9.51687 -8.93397 -8.89245 -6.29002 0.15724 0.37237 1.12681 1.44327 1.51235 1.61493 1.79627 1.94970 2.33137 2.73947 3.01809 3.05909 3.17356 3.25387 3.47259 3.49731 3.74094 3.81834 3.92878 4.04448 4.09586 4.17719 4.21301 4.25995 4.27501 4.30159 4.46441 4.52137 4.56415 4.61577 4.70150 4.77998 4.83744 4.84933 4.87609 5.01590 5.13103 5.25079 5.27251 5.30800 5.45037 5.63709 5.78089 5.88297 6.13893 6.24476 6.33453 6.99323 7.03911 7.05734 8.50032 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.032034 B = 0.001897 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.862317 B =14754.942735 C =15326.711853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 H 0.117 0.883 4 C 0.095 3.905 5 N -0.613 5.613 6 C 0.545 3.455 7 O -0.568 6.568 8 C -0.099 4.099 9 S -0.195 6.195 10 C -0.613 4.613 11 H 0.075 0.925 12 C -0.019 4.019 13 N -0.913 5.913 14 Si 1.140 2.860 15 H -0.267 1.267 16 H -0.262 1.262 17 H -0.279 1.279 18 C 0.118 3.882 19 C 0.089 3.911 20 H 0.072 0.928 21 N -0.665 5.665 22 C 0.110 3.890 23 C 0.114 3.886 24 C -0.163 4.163 25 C -0.082 4.082 26 C -0.172 4.172 27 C 0.085 3.915 28 N -0.507 5.507 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.260 0.740 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.356 0.644 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.141 0.859 43 H 0.156 0.844 44 H 0.162 0.838 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.171 20.111 24.594 34.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.112 4.112 3 H 0.135 0.865 4 C -0.027 4.027 5 N -0.348 5.348 6 C 0.333 3.667 7 O -0.447 6.447 8 C -0.250 4.250 9 S 0.031 5.969 10 C -0.760 4.760 11 H 0.094 0.906 12 C -0.222 4.222 13 N -0.548 5.548 14 Si 0.957 3.043 15 H -0.192 1.192 16 H -0.186 1.186 17 H -0.204 1.204 18 C -0.005 4.005 19 C -0.022 4.022 20 H 0.090 0.910 21 N -0.299 5.299 22 C -0.019 4.019 23 C -0.023 4.023 24 C -0.183 4.183 25 C -0.107 4.107 26 C -0.191 4.191 27 C -0.072 4.072 28 N -0.217 5.217 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.178 0.822 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.159 0.841 43 H 0.174 0.826 44 H 0.179 0.821 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.128 18.062 23.424 31.969 hybrid contribution -0.521 1.177 1.424 1.919 sum -12.649 19.240 24.848 33.876 Atomic orbital electron populations 1.21667 0.92743 1.01977 1.02640 1.22391 0.97628 0.99623 0.91511 0.86495 1.22451 1.01578 0.80363 0.98303 1.48302 1.62649 1.12177 1.11646 1.19715 0.76430 0.83199 0.87340 1.90688 1.54411 1.25514 1.74049 1.23144 1.05143 1.02197 0.94553 1.85072 1.83120 1.17667 1.11003 1.24048 1.53276 1.03044 0.95651 0.90630 1.27868 0.91968 0.92952 1.09445 1.70887 1.44857 1.17592 1.21466 0.82680 0.77886 0.75667 0.68035 1.19229 1.18618 1.20413 1.22269 1.00404 0.98158 0.79659 1.22571 0.96040 0.93286 0.90285 0.91039 1.60313 1.31911 1.38079 0.99604 1.20842 0.93011 1.02213 0.85836 1.21140 0.96354 0.88884 0.95962 1.22176 0.98128 1.00580 0.97450 1.21985 0.95537 0.98665 0.94553 1.22496 1.01226 0.93266 1.02137 1.23181 0.91921 1.00963 0.91134 1.67446 1.16846 1.24607 1.12813 0.93685 0.91027 0.91368 0.89950 0.90161 0.87269 0.87404 0.92879 0.90978 0.92454 0.82234 0.89316 0.93160 0.84141 0.82595 0.82080 0.80727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.49 71.98 0.61 -1.11 16 2 C -0.09 -1.24 3.39 -9.61 -0.03 -1.28 16 3 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 4 C 0.10 1.84 6.06 86.73 0.53 2.37 16 5 N -0.61 -17.47 3.32 -811.36 -2.70 -20.17 16 6 C 0.55 21.61 7.87 87.66 0.69 22.30 16 7 O -0.57 -27.76 16.12 -3.06 -0.05 -27.81 16 8 C -0.10 -4.11 5.35 71.24 0.38 -3.73 16 9 S -0.20 -11.02 19.60 -56.49 -1.11 -12.13 16 10 C -0.61 -35.75 9.50 67.95 0.65 -35.11 16 11 H 0.08 4.13 7.80 -2.91 -0.02 4.11 16 12 C -0.02 -1.13 5.49 84.86 0.47 -0.66 16 13 N -0.91 -58.56 13.67 21.65 0.30 -58.26 16 14 Si 1.14 49.62 29.92 68.60 2.05 51.67 16 15 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 16 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 18 C 0.12 2.90 6.29 86.93 0.55 3.44 16 19 C 0.09 1.46 3.19 46.39 0.15 1.61 16 20 H 0.07 1.16 7.83 -2.39 -0.02 1.14 16 21 N -0.67 -9.87 5.74 -488.01 -2.80 -12.67 16 22 C 0.11 1.69 5.86 85.56 0.50 2.19 16 23 C 0.11 1.87 6.29 42.55 0.27 2.14 16 24 C -0.16 -2.32 9.72 22.36 0.22 -2.10 16 25 C -0.08 -0.88 10.18 22.47 0.23 -0.65 16 26 C -0.17 -1.61 10.11 22.36 0.23 -1.39 16 27 C 0.08 1.04 11.18 84.67 0.95 1.99 16 28 N -0.51 -8.63 10.27 -183.88 -1.89 -10.52 16 29 H 0.04 0.77 7.42 -2.39 -0.02 0.75 16 30 H 0.07 0.78 6.75 -2.39 -0.02 0.77 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.49 7.85 -2.39 -0.02 1.47 16 34 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 35 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 36 H 0.26 17.41 7.12 -92.71 -0.66 16.75 16 37 H 0.07 1.85 7.69 -2.39 -0.02 1.83 16 38 H 0.06 1.60 8.03 -2.39 -0.02 1.58 16 39 H 0.36 4.81 7.01 -89.70 -0.63 4.18 16 40 H 0.09 1.36 8.04 -2.39 -0.02 1.34 16 41 H 0.05 0.78 8.09 -2.39 -0.02 0.76 16 42 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 45 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -81.09 385.52 0.64 -80.45 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.47 Total: 19.43 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 6.37 Total: -9.99 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -7.09 Total: -101.62 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.05 Total: -27.81 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.67 kcal Atomic # 16 Polarization: -11.02 SS G_CDS: -1.11 Total: -12.13 kcal Total: -81.09 0.64 -80.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484879453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.483 kcal (2) G-P(sol) polarization free energy of solvation -81.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds