Wall clock time and date at job start Tue Mar 31 2020 19:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39899 * 109.46924 * 2 1 4 4 F 1.39900 * 109.46860 * 240.00016 * 2 1 3 5 5 C 1.50697 * 109.47119 * 120.00094 * 2 1 3 6 6 O 1.21282 * 120.00128 * 19.46902 * 5 2 1 7 7 N 1.34775 * 119.99746 * 199.19702 * 5 2 1 8 8 C 1.47156 * 120.98262 * 174.47886 * 7 5 2 9 9 C 1.53710 * 108.16414 * 129.42809 * 8 7 5 10 10 O 1.42965 * 109.14506 * 52.54270 * 9 8 7 11 11 C 1.42961 * 114.16367 * 297.28320 * 10 9 8 12 12 H 1.08997 * 109.51473 * 302.66408 * 11 10 9 13 13 C 1.52999 * 109.55510 * 182.53347 * 11 10 9 14 14 N 1.46897 * 109.47227 * 65.22960 * 13 11 10 15 15 C 1.46899 * 110.99944 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46928 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00053 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99924 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99906 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00303 * 0.02562 * 19 18 16 21 21 C 1.38959 * 119.99720 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99603 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00047 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47235 * 90.00016 * 23 21 19 25 25 H 1.48497 * 109.46838 * 209.99838 * 23 21 19 26 26 H 1.48500 * 109.47096 * 329.99585 * 23 21 19 27 27 C 1.47154 * 120.98470 * 354.75818 * 7 5 2 28 28 H 1.09005 * 109.47005 * 300.00030 * 1 2 3 29 29 H 1.08999 * 109.47293 * 59.99787 * 1 2 3 30 30 H 1.09001 * 109.46907 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.68054 * 249.21003 * 8 7 5 32 32 H 1.09005 * 109.68171 * 9.75797 * 8 7 5 33 33 H 1.08995 * 109.65821 * 292.57424 * 9 8 7 34 34 H 1.08999 * 109.43989 * 172.36965 * 9 8 7 35 35 H 1.09000 * 109.47105 * 185.23025 * 13 11 10 36 36 H 1.09002 * 109.46871 * 305.23070 * 13 11 10 37 37 H 1.00901 * 110.99912 * 56.04832 * 14 13 11 38 38 H 1.09001 * 109.47021 * 299.99367 * 15 14 13 39 39 H 1.08997 * 109.47614 * 60.00147 * 15 14 13 40 40 H 0.97003 * 120.00317 * 359.97438 * 18 16 15 41 41 H 0.97001 * 119.99763 * 180.02562 * 22 21 19 42 42 H 1.08999 * 109.67987 * 350.23511 * 27 7 5 43 43 H 1.09000 * 109.68034 * 110.75124 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.3009 -1.4645 1.8364 7 7 3.2963 -0.5120 1.6543 8 6 3.7725 -1.0981 2.9173 9 6 5.0931 -1.8329 2.6366 10 8 5.9927 -0.9429 1.9713 11 6 5.5353 -0.4964 0.6926 12 1 5.3469 -1.3580 0.0521 13 6 6.6003 0.3947 0.0503 14 7 7.8019 -0.4024 -0.2298 15 6 8.8487 0.4224 -0.8477 16 6 10.0627 -0.4279 -1.1204 17 8 10.0567 -1.6051 -0.8282 18 7 11.1551 0.1197 -1.6889 19 6 12.2597 -0.6537 -1.9365 20 1 12.2544 -1.7018 -1.6763 21 6 13.3861 -0.0889 -2.5222 22 7 14.4447 -0.8304 -2.7599 23 14 13.3956 1.7242 -2.9715 24 1 13.9014 2.5165 -1.8219 25 1 14.2779 1.9382 -4.1466 26 1 12.0150 2.1591 -3.3034 27 6 4.2390 0.3023 0.8709 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.9374 -0.3078 3.6496 32 1 3.0325 -1.8026 3.2971 33 1 4.9031 -2.6993 2.0031 34 1 5.5340 -2.1592 3.5785 35 1 6.2140 0.8091 -0.8809 36 1 6.8537 1.2068 0.7319 37 1 7.5806 -1.1992 -0.8079 38 1 8.4782 0.8372 -1.7852 39 1 9.1177 1.2344 -0.1722 40 1 11.1598 1.0611 -1.9230 41 1 15.2312 -0.4361 -3.1684 42 1 3.8081 0.5254 -0.1051 43 1 4.4495 1.2315 1.4004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502034431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:17 Heat of formation + Delta-G solvation = -188.351144 kcal Electronic energy + Delta-G solvation = -29385.281274 eV Core-core repulsion = 24716.430492 eV Total energy + Delta-G solvation = -4668.850782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.86116 -47.76651 -40.78380 -39.04507 -38.38808 -35.75727 -35.22991 -33.90961 -32.36141 -31.93848 -31.61160 -29.23869 -27.47989 -25.57656 -25.20838 -23.52960 -22.70813 -21.63512 -20.45175 -19.37108 -18.67925 -18.37907 -18.32939 -17.62447 -16.99493 -16.52094 -16.07394 -15.86679 -15.50863 -15.37236 -15.19473 -14.91195 -14.74222 -14.54275 -14.16662 -14.07283 -13.93528 -13.66532 -13.55320 -13.25898 -13.14059 -13.03779 -12.82323 -12.73615 -12.46590 -12.27868 -12.16291 -11.84683 -11.69394 -11.51654 -11.14791 -11.02048 -10.58768 -10.51477 -10.37016 -9.96394 -9.55932 -9.13198 -8.58284 -8.18176 -8.12589 -6.29735 -3.81085 1.51799 1.89451 2.94611 3.03049 3.07872 3.15787 3.28609 3.42217 3.70544 3.75718 3.89269 3.97034 4.11310 4.37023 4.48705 4.63184 4.63799 4.79770 4.83317 4.88231 4.95799 5.01942 5.02826 5.17545 5.23266 5.28901 5.30831 5.38178 5.45743 5.62965 5.66897 5.73483 5.80232 5.94626 6.46786 6.89865 7.06381 7.12054 7.54456 7.59736 8.16070 8.61340 8.96556 9.43887 9.84453 10.83446 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.022612 B = 0.002177 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.002035 B =12859.343904 C =13516.696926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.281 3.719 3 F -0.184 7.184 4 F -0.180 7.180 5 C 0.489 3.511 6 O -0.503 6.503 7 N -0.595 5.595 8 C 0.073 3.927 9 C 0.047 3.953 10 O -0.349 6.349 11 C 0.083 3.917 12 H 0.066 0.934 13 C 0.068 3.932 14 N -0.659 5.659 15 C 0.049 3.951 16 C 0.451 3.549 17 O -0.563 6.563 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.881 3.119 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.068 3.932 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.350 0.650 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.100 0.900 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.821 7.112 7.157 30.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.241 3.759 3 F -0.165 7.165 4 F -0.161 7.161 5 C 0.272 3.728 6 O -0.378 6.378 7 N -0.329 5.329 8 C -0.049 4.049 9 C -0.031 4.031 10 O -0.267 6.267 11 C 0.024 3.976 12 H 0.084 0.916 13 C -0.062 4.062 14 N -0.292 5.292 15 C -0.084 4.084 16 C 0.236 3.764 17 O -0.445 6.445 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.163 4.163 22 N -0.522 5.522 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.056 4.056 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.170 0.830 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -28.522 6.010 8.291 30.304 hybrid contribution -0.219 1.659 -1.600 2.315 sum -28.741 7.669 6.692 30.490 Atomic orbital electron populations 1.22630 0.88437 1.06896 1.05876 1.21363 0.96053 0.75721 0.82745 1.93051 1.90079 1.36786 1.96622 1.93114 1.90424 1.80702 1.51863 1.20795 0.82579 0.83183 0.86249 1.90775 1.55466 1.35313 1.56224 1.48173 1.10505 1.50614 1.23561 1.22653 0.97852 0.99538 0.84816 1.23064 0.88932 0.92103 0.98990 1.88185 1.43414 1.64213 1.30847 1.22468 0.91922 0.96800 0.86457 0.91562 1.21904 0.89781 0.95810 0.98715 1.59926 1.07316 1.09526 1.52427 1.21715 0.92522 0.96289 0.97889 1.19689 0.84416 0.88758 0.83520 1.90572 1.82550 1.16442 1.54891 1.42204 1.14018 1.10804 1.56080 1.19434 0.89545 0.96516 1.37807 0.86293 1.25049 0.95364 0.98340 0.97504 1.69625 1.04044 1.35857 1.42667 0.86657 0.78332 0.85083 0.79210 1.19599 1.20234 1.19532 1.22845 0.90182 0.94913 0.97618 0.88695 0.88891 0.88013 0.89691 0.87781 0.92383 0.87016 0.93579 0.89678 0.83030 0.93750 0.89300 0.79693 0.91636 0.88147 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 8.85 37.16 0.33 -0.69 16 2 C 0.28 2.27 1.77 -27.88 -0.05 2.22 16 3 F -0.18 -1.46 14.44 2.25 0.03 -1.43 16 4 F -0.18 -1.66 16.54 2.25 0.04 -1.62 16 5 C 0.49 4.77 7.16 -10.99 -0.08 4.69 16 6 O -0.50 -5.90 15.50 5.56 0.09 -5.81 16 7 N -0.60 -5.42 3.01 -172.01 -0.52 -5.94 16 8 C 0.07 0.59 6.68 -3.32 -0.02 0.57 16 9 C 0.05 0.43 7.00 37.53 0.26 0.69 16 10 O -0.35 -4.20 10.34 -35.23 -0.36 -4.57 16 11 C 0.08 0.86 2.95 -26.58 -0.08 0.78 16 12 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 13 C 0.07 0.75 5.36 -3.83 -0.02 0.72 16 14 N -0.66 -10.13 6.08 -115.06 -0.70 -10.83 16 15 C 0.05 0.79 6.17 -4.97 -0.03 0.76 16 16 C 0.45 10.25 7.82 -10.98 -0.09 10.17 16 17 O -0.56 -15.27 15.78 5.55 0.09 -15.19 16 18 N -0.59 -14.11 5.09 -10.96 -0.06 -14.16 16 19 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 20 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 21 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 22 N -0.88 -25.86 13.96 55.50 0.77 -25.09 16 23 Si 0.88 19.35 27.74 -169.99 -4.71 14.63 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 27 C 0.07 0.57 5.04 -3.53 -0.02 0.55 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.58 7.90 -51.93 -0.41 0.17 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.84 7.06 -51.93 -0.37 0.47 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.10 0.79 5.06 -51.93 -0.26 0.53 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -35.08 363.14 -5.71 -40.79 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.81 Total: 11.07 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -0.04 Total: 12.67 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.50 Total: -56.02 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.19 Total: -25.57 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.07 Total: -3.05 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.08 -5.71 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502034431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.561 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds