Wall clock time and date at job start Tue Mar 31 2020 19:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39895 * 109.47568 * 2 1 4 4 F 1.39902 * 109.47033 * 240.00174 * 2 1 3 5 5 C 1.50696 * 109.47275 * 120.00446 * 2 1 3 6 6 O 1.21288 * 120.00021 * 343.54507 * 5 2 1 7 7 N 1.34778 * 120.00370 * 163.55161 * 5 2 1 8 8 C 1.47151 * 120.98627 * 176.25214 * 7 5 2 9 9 C 1.53289 * 108.38687 * 230.55578 * 8 7 5 10 10 O 1.42968 * 109.22441 * 307.70047 * 9 8 7 11 11 C 1.42956 * 114.16983 * 62.57544 * 10 9 8 12 12 H 1.09008 * 109.51085 * 57.39791 * 11 10 9 13 13 C 1.52990 * 109.51416 * 177.49863 * 11 10 9 14 14 N 1.46903 * 109.47538 * 300.00095 * 13 11 10 15 15 C 1.46893 * 111.00300 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46969 * 180.02562 * 15 14 13 17 17 O 1.21295 * 119.99937 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99700 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99610 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00246 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99966 * 179.72414 * 19 18 16 22 22 N 1.31411 * 119.99888 * 0.27387 * 21 19 18 23 23 Si 1.86801 * 120.00329 * 180.27775 * 21 19 18 24 24 H 1.48496 * 109.47322 * 89.99854 * 23 21 19 25 25 H 1.48495 * 109.47172 * 210.00215 * 23 21 19 26 26 H 1.48506 * 109.46858 * 329.99964 * 23 21 19 27 27 C 1.47155 * 120.97708 * 356.27280 * 7 5 2 28 28 H 1.09001 * 109.46827 * 300.00387 * 1 2 3 29 29 H 1.09002 * 109.47124 * 59.99551 * 1 2 3 30 30 H 1.09000 * 109.47448 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.68126 * 110.83167 * 8 7 5 32 32 H 1.09002 * 109.67922 * 350.27598 * 8 7 5 33 33 H 1.08992 * 109.51761 * 187.77300 * 9 8 7 34 34 H 1.09008 * 109.51166 * 67.61908 * 9 8 7 35 35 H 1.09006 * 109.47633 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.47405 * 59.99918 * 13 11 10 37 37 H 1.00895 * 110.99545 * 303.95984 * 14 13 11 38 38 H 1.08998 * 109.47341 * 60.00018 * 15 14 13 39 39 H 1.08997 * 109.47297 * 299.99971 * 15 14 13 40 40 H 0.96998 * 120.00355 * 0.02562 * 18 16 15 41 41 H 0.97003 * 120.00005 * 179.97438 * 22 21 19 42 42 H 1.08997 * 109.68332 * 9.72529 * 27 7 5 43 43 H 1.08994 * 109.68071 * 249.16354 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7105 1.2304 6 8 1.2847 -0.9067 2.1651 7 7 3.3124 -1.1278 1.2922 8 6 3.8481 -1.7503 2.5132 9 6 5.1572 -1.0431 2.8821 10 8 6.0222 -1.0303 1.7439 11 6 5.5069 -0.3047 0.6252 12 1 5.2957 0.7223 0.9234 13 6 6.5386 -0.3069 -0.5045 14 7 7.7776 0.3293 -0.0375 15 6 8.7937 0.3447 -1.0982 16 6 10.0477 1.0028 -0.5830 17 8 10.0908 1.4178 0.5560 18 7 11.1213 1.1303 -1.3878 19 6 12.2619 1.7295 -0.9193 20 1 12.3004 2.0990 0.0948 21 6 13.3707 1.8558 -1.7471 22 7 13.3242 1.4057 -2.9809 23 14 14.9276 2.6652 -1.1063 24 1 15.8079 1.6345 -0.5000 25 1 15.6399 3.3263 -2.2291 26 1 14.5723 3.6785 -0.0804 27 6 4.2156 -0.9740 0.1407 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.0405 -2.8078 2.3321 32 1 3.1302 -1.6411 3.3262 33 1 5.6406 -1.5758 3.7008 34 1 4.9439 -0.0190 3.1887 35 1 6.1452 0.2470 -1.3570 36 1 6.7480 -1.3340 -0.8034 37 1 7.5984 1.2611 0.3056 38 1 8.4160 0.9024 -1.9552 39 1 9.0186 -0.6780 -1.4008 40 1 11.0867 0.7988 -2.2987 41 1 14.0981 1.4942 -3.5590 42 1 3.7412 -0.3509 -0.6174 43 1 4.4451 -1.9533 -0.2792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502034432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:20 Heat of formation + Delta-G solvation = -193.319315 kcal Electronic energy + Delta-G solvation = -29359.946075 eV Core-core repulsion = 24690.879856 eV Total energy + Delta-G solvation = -4669.066218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.87568 -47.77069 -40.74267 -38.99832 -38.19223 -35.66607 -35.15980 -33.84744 -32.31170 -31.88899 -31.17154 -29.18323 -27.32662 -25.54766 -25.15986 -23.63185 -22.69330 -21.55072 -20.44055 -19.22555 -18.62306 -18.37800 -17.87544 -17.61205 -16.97108 -16.49553 -16.03993 -15.83993 -15.50880 -15.25089 -15.11283 -14.80092 -14.62575 -14.36790 -14.22334 -14.07169 -13.95631 -13.64154 -13.45154 -13.38892 -13.10297 -13.00661 -12.78673 -12.69573 -12.37195 -12.03870 -11.89233 -11.53614 -11.48427 -11.42920 -11.02149 -10.98431 -10.47581 -10.37882 -10.28421 -10.19852 -9.48834 -9.09428 -8.43814 -8.02671 -7.93478 -6.39797 -3.80414 1.54741 1.93016 2.97399 3.19531 3.27876 3.30561 3.33845 3.47996 3.72874 3.92914 3.96243 4.00397 4.22562 4.44282 4.60085 4.68606 4.69261 4.86690 4.87175 4.98025 5.02596 5.08415 5.15738 5.24094 5.28348 5.32161 5.36289 5.45374 5.50884 5.70914 5.78560 5.81886 5.99458 6.28073 6.50844 6.95980 7.14833 7.20924 7.57236 7.65612 8.08591 8.63719 9.20138 9.56660 10.08396 10.78032 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.025441 B = 0.002064 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.334307 B =13561.267901 C =14136.969099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.281 3.719 3 F -0.179 7.179 4 F -0.183 7.183 5 C 0.489 3.511 6 O -0.504 6.504 7 N -0.594 5.594 8 C 0.073 3.927 9 C 0.046 3.954 10 O -0.347 6.347 11 C 0.082 3.918 12 H 0.065 0.935 13 C 0.068 3.932 14 N -0.658 5.658 15 C 0.051 3.949 16 C 0.442 3.558 17 O -0.581 6.581 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.059 3.941 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.349 0.651 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.108 0.892 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.075 -6.309 2.827 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.241 3.759 3 F -0.160 7.160 4 F -0.164 7.164 5 C 0.271 3.729 6 O -0.379 6.379 7 N -0.327 5.327 8 C -0.048 4.048 9 C -0.031 4.031 10 O -0.264 6.264 11 C 0.023 3.977 12 H 0.083 0.917 13 C -0.062 4.062 14 N -0.291 5.291 15 C -0.082 4.082 16 C 0.227 3.773 17 O -0.465 6.465 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.064 4.064 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.168 0.832 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.832 -6.779 4.220 27.038 hybrid contribution 0.380 0.995 -1.152 1.569 sum -25.453 -5.783 3.069 26.281 Atomic orbital electron populations 1.22625 0.88432 1.06496 1.06260 1.21372 0.96051 0.76250 0.82185 1.93115 1.90461 1.35934 1.96525 1.93005 1.89690 1.80760 1.52902 1.20775 0.82710 0.80555 0.88815 1.90775 1.54744 1.55332 1.37059 1.48179 1.09893 1.58698 1.15891 1.22559 0.97078 0.98029 0.87160 1.22991 0.89716 1.00539 0.89904 1.88211 1.42629 1.73751 1.21828 1.22491 0.91768 0.95118 0.88346 0.91712 1.21911 0.89647 1.01303 0.93358 1.59924 1.07150 1.26902 1.35081 1.21682 0.92596 1.01393 0.92488 1.19795 0.85071 0.85391 0.87031 1.90530 1.83465 1.53560 1.18982 1.41862 1.11612 1.52745 1.13951 1.19702 0.89398 1.34045 0.99625 0.87939 1.25262 0.99571 0.97903 0.95285 1.69613 1.31658 1.46808 1.06326 0.85854 0.80969 0.79247 0.78193 1.20399 1.20971 1.19441 1.23026 0.91216 1.03912 0.88255 0.88070 0.88904 0.88639 0.89727 0.87896 0.87013 0.92551 0.93645 0.89831 0.83211 0.93886 0.89464 0.77463 0.91908 0.87370 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 8.81 37.16 0.33 -0.73 16 2 C 0.28 2.34 1.80 -27.89 -0.05 2.29 16 3 F -0.18 -1.69 16.82 2.25 0.04 -1.66 16 4 F -0.18 -1.49 14.11 2.25 0.03 -1.46 16 5 C 0.49 4.89 7.20 -10.99 -0.08 4.81 16 6 O -0.50 -6.01 15.49 5.55 0.09 -5.92 16 7 N -0.59 -5.63 3.02 -172.28 -0.52 -6.15 16 8 C 0.07 0.63 6.63 -3.54 -0.02 0.60 16 9 C 0.05 0.44 6.98 37.31 0.26 0.70 16 10 O -0.35 -4.38 10.25 -35.23 -0.36 -4.74 16 11 C 0.08 0.90 2.99 -26.58 -0.08 0.82 16 12 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 13 C 0.07 0.80 5.38 -3.83 -0.02 0.78 16 14 N -0.66 -10.69 5.99 -115.06 -0.69 -11.38 16 15 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 16 C 0.44 10.52 7.82 -10.98 -0.09 10.43 16 17 O -0.58 -16.02 15.78 5.54 0.09 -15.93 16 18 N -0.56 -14.41 5.29 -10.96 -0.06 -14.46 16 19 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 23 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.06 0.52 5.26 -3.53 -0.02 0.50 16 28 H 0.10 0.59 7.93 -51.93 -0.41 0.18 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.86 7.11 -51.93 -0.37 0.49 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.35 5.86 8.43 -39.29 -0.33 5.53 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.11 0.90 4.79 -51.93 -0.25 0.65 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -33.79 366.07 -6.05 -39.85 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.84 Total: 11.08 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -0.04 Total: 13.02 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.54 Total: -55.91 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.19 Total: -26.59 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.79 -6.05 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502034432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.473 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds