Wall clock time and date at job start Tue Mar 31 2020 18:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47378 * 2 1 4 4 N 1.46501 * 109.47085 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00091 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99645 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00360 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00244 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99631 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46966 * 90.00116 * 9 7 5 11 11 H 1.48505 * 109.46854 * 209.99731 * 9 7 5 12 12 H 1.48499 * 109.47400 * 330.00128 * 9 7 5 13 13 N 1.46505 * 109.46874 * 120.00109 * 2 1 3 14 14 C 1.34777 * 119.99770 * 294.93939 * 13 2 1 15 15 O 1.21686 * 120.00285 * 5.19709 * 14 13 2 16 16 C 1.46685 * 120.00006 * 185.20664 * 14 13 2 17 17 S 1.76217 * 126.13085 * 359.68587 * 16 14 13 18 18 C 1.70947 * 90.31270 * 179.97438 * 17 16 14 19 19 N 1.29428 * 110.39436 * 0.35081 * 18 17 16 20 20 C 1.30939 * 117.36183 * 359.71838 * 19 18 17 21 21 C 1.50707 * 122.90445 * 180.02562 * 20 19 18 22 22 C 1.52990 * 117.49596 * 8.62808 * 21 20 19 23 23 C 1.52998 * 60.00237 * 252.50934 * 22 21 20 24 24 C 1.52999 * 109.47149 * 239.99668 * 2 1 3 25 25 C 1.53002 * 117.51794 * 225.39536 * 24 2 1 26 26 C 1.52997 * 117.49856 * 294.02471 * 24 2 1 27 27 H 1.09002 * 109.47433 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47051 * 300.00191 * 1 2 3 29 29 H 1.09002 * 109.46805 * 60.00098 * 1 2 3 30 30 H 1.09002 * 109.47073 * 299.99739 * 3 2 1 31 31 H 1.09003 * 109.47186 * 59.99891 * 3 2 1 32 32 H 0.97002 * 120.00277 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99711 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00138 * 114.93922 * 13 2 1 35 35 H 1.08001 * 124.80272 * 180.02562 * 18 17 16 36 36 H 1.08993 * 115.54541 * 154.33464 * 21 20 19 37 37 H 1.08998 * 117.50367 * 359.97438 * 22 21 20 38 38 H 1.09004 * 117.50251 * 145.01935 * 22 21 20 39 39 H 1.09002 * 117.50083 * 252.51344 * 23 22 21 40 40 H 1.08996 * 117.51914 * 107.48219 * 23 22 21 41 41 H 1.09000 * 115.54897 * 79.69598 * 24 2 1 42 42 H 1.08999 * 117.49861 * 214.96764 * 25 24 2 43 43 H 1.09002 * 117.49810 * 359.97438 * 25 24 2 44 44 H 1.09003 * 117.50405 * 359.97438 * 26 24 2 45 45 H 1.09003 * 117.49936 * 144.99860 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1898 2.6283 0.0013 6 1 3.6498 3.5636 0.0009 7 6 5.5779 2.6283 0.0024 8 7 6.2360 3.7681 0.0025 9 14 6.5118 1.0104 0.0037 10 1 6.7604 0.5812 -1.3960 11 1 7.8089 1.1883 0.7047 12 1 5.7087 -0.0242 0.7035 13 7 2.0183 -0.6907 1.1962 14 6 1.7788 -0.1738 2.4177 15 8 1.0776 0.8139 2.5336 16 6 2.3637 -0.8017 3.6073 17 16 3.3913 -2.2331 3.6277 18 6 3.5135 -2.1326 5.3299 19 7 2.8328 -1.1246 5.7722 20 6 2.2048 -0.3887 4.8898 21 6 1.3773 0.8133 5.2662 22 6 1.4437 1.2898 6.7184 23 6 0.1871 0.5871 6.2006 24 6 2.0400 -0.7213 -1.2492 25 6 3.1740 -1.7324 -1.0682 26 6 1.7545 -2.2199 -1.3656 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9900 0.6023 0.0013 33 1 7.2060 3.7680 0.0029 34 1 2.5138 -1.5199 1.1091 35 1 4.0747 -2.8168 5.9490 36 1 1.2717 1.5725 4.4913 37 1 2.0854 0.7338 7.4018 38 1 1.3818 2.3629 6.8994 39 1 -0.7014 1.1979 6.0408 40 1 0.0023 -0.4311 6.5428 41 1 2.0308 -0.1344 -2.1676 42 1 3.9108 -1.8107 -1.8676 43 1 3.5572 -1.8835 -0.0590 44 1 1.2038 -2.6921 -0.5521 45 1 1.5576 -2.6189 -2.3607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568028785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:15 Heat of formation + Delta-G solvation = 68.114864 kcal Electronic energy + Delta-G solvation = -27878.577980 eV Core-core repulsion = 24217.830799 eV Total energy + Delta-G solvation = -3660.747181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.86072 -40.99402 -38.86076 -37.46696 -36.44768 -34.94088 -33.59589 -32.43838 -31.10968 -27.73673 -27.22681 -24.90492 -24.08755 -23.69717 -23.29250 -23.25747 -22.86604 -20.74079 -20.53206 -19.68312 -19.07363 -18.18138 -17.13246 -16.79963 -16.56703 -16.40135 -16.04882 -15.90506 -15.59840 -15.38527 -15.19456 -14.92519 -14.84114 -14.29218 -14.09471 -13.94247 -13.50315 -13.38393 -13.08441 -12.86660 -12.74544 -12.45791 -12.42799 -12.39849 -12.23214 -12.09655 -11.85827 -11.78368 -11.40308 -11.24942 -11.13557 -11.10347 -10.94797 -10.63407 -10.61373 -10.08329 -9.74504 -9.26365 -8.04675 -5.36193 -0.82466 0.12243 0.48576 1.26938 1.33215 1.34069 1.40650 1.91759 2.14443 2.44103 2.84605 2.93233 3.13473 3.25782 3.47286 3.58084 3.61383 3.78153 3.88420 3.93533 3.97275 4.10456 4.18681 4.21326 4.43214 4.47240 4.51637 4.66392 4.71043 4.77700 4.84086 4.84684 4.91149 5.00800 5.02030 5.09459 5.17176 5.20553 5.25492 5.26729 5.33913 5.55997 5.73333 6.18689 6.36076 6.53469 7.06365 7.11068 7.81780 8.05946 9.17622 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009577 B = 0.005201 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.026173 B = 5381.814157 C = 6048.159404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.205 3.795 3 C 0.143 3.857 4 N -0.743 5.743 5 C -0.229 4.229 6 H 0.048 0.952 7 C -0.065 4.065 8 N -0.985 5.985 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.296 1.296 12 H -0.253 1.253 13 N -0.709 5.709 14 C 0.597 3.403 15 O -0.539 6.539 16 C -0.322 4.322 17 S 0.196 5.804 18 C 0.051 3.949 19 N -0.493 5.493 20 C 0.167 3.833 21 C -0.127 4.127 22 C -0.153 4.153 23 C -0.138 4.138 24 C -0.164 4.164 25 C -0.199 4.199 26 C -0.141 4.141 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.367 0.633 33 H 0.257 0.743 34 H 0.401 0.599 35 H 0.252 0.748 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.788 -21.402 7.103 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.119 3.881 3 C 0.016 3.984 4 N -0.389 5.389 5 C -0.360 4.360 6 H 0.066 0.934 7 C -0.256 4.256 8 N -0.636 5.636 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.223 1.223 12 H -0.177 1.177 13 N -0.364 5.364 14 C 0.384 3.616 15 O -0.418 6.418 16 C -0.446 4.446 17 S 0.452 5.548 18 C -0.244 4.244 19 N -0.207 5.207 20 C 0.030 3.970 21 C -0.147 4.147 22 C -0.190 4.190 23 C -0.175 4.175 24 C -0.183 4.183 25 C -0.236 4.236 26 C -0.178 4.178 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.240 0.760 35 H 0.267 0.733 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.135 0.865 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.823 -21.150 6.971 24.760 hybrid contribution 0.989 0.476 0.120 1.104 sum -9.834 -20.674 7.091 23.967 Atomic orbital electron populations 1.22017 0.91902 1.03315 1.03109 1.20040 0.95001 0.90303 0.82729 1.21183 0.83192 0.95194 0.98854 1.42444 1.02084 1.03691 1.90715 1.19017 0.89826 0.86361 1.40842 0.93428 1.25483 0.97038 1.00237 1.02880 1.69897 1.07020 1.26644 1.60050 0.85490 0.77891 0.80427 0.78628 1.19391 1.22277 1.17729 1.46078 1.58107 1.27349 1.04895 1.16811 0.79764 0.82896 0.82176 1.90706 1.38959 1.26195 1.85941 1.25507 1.13785 1.06772 0.98561 1.83603 1.41829 1.21127 1.08285 1.29473 0.99605 0.98495 0.96808 1.66001 1.11073 1.06540 1.37065 1.19840 0.95060 0.95511 0.86633 1.20835 1.01906 0.96233 0.95747 1.23013 1.00822 1.01369 0.93845 1.22939 0.91979 1.02379 1.00244 1.22423 1.04699 0.93072 0.98096 1.23099 0.93333 1.04474 1.02738 1.23097 0.96375 0.93640 1.04648 0.90276 0.92541 0.90348 0.95055 0.95284 0.79854 0.93431 0.75980 0.73253 0.86728 0.87743 0.87573 0.87122 0.88351 0.86474 0.87738 0.89630 0.87621 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 8.37 71.98 0.60 -3.19 16 2 C 0.20 6.28 0.52 3.60 0.00 6.28 16 3 C 0.14 6.03 4.89 86.38 0.42 6.45 16 4 N -0.74 -36.45 5.03 -343.45 -1.73 -38.18 16 5 C -0.23 -13.87 10.47 84.03 0.88 -12.99 16 6 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 7 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 8 N -0.99 -65.45 13.97 21.65 0.30 -65.14 16 9 Si 0.95 46.27 27.73 68.60 1.90 48.17 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.25 -11.02 6.52 99.48 0.65 -10.37 16 13 N -0.71 -21.31 4.48 -426.84 -1.91 -23.22 16 14 C 0.60 20.80 7.19 86.45 0.62 21.43 16 15 O -0.54 -21.80 10.56 -4.30 -0.05 -21.85 16 16 C -0.32 -9.90 6.48 23.88 0.15 -9.74 16 17 S 0.20 4.00 22.36 -56.49 -1.26 2.74 16 18 C 0.05 0.93 12.22 130.60 1.60 2.53 16 19 N -0.49 -12.77 9.80 -190.40 -1.87 -14.64 16 20 C 0.17 5.15 6.42 42.10 0.27 5.42 16 21 C -0.13 -3.93 5.44 -11.54 -0.06 -3.99 16 22 C -0.15 -3.84 10.08 30.59 0.31 -3.53 16 23 C -0.14 -3.29 10.23 30.59 0.31 -2.97 16 24 C -0.16 -4.19 4.48 -10.79 -0.05 -4.24 16 25 C -0.20 -4.59 8.98 30.60 0.27 -4.31 16 26 C -0.14 -2.43 9.53 30.59 0.29 -2.14 16 27 H 0.08 1.66 7.72 -2.39 -0.02 1.64 16 28 H 0.06 1.75 6.37 -2.39 -0.02 1.73 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 1.41 5.98 -2.39 -0.01 1.40 16 32 H 0.37 16.78 4.29 -92.71 -0.40 16.38 16 33 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 34 H 0.40 10.15 4.83 -92.71 -0.45 9.70 16 35 H 0.25 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.11 4.29 6.17 -2.39 -0.01 4.27 16 37 H 0.10 2.57 7.74 -2.39 -0.02 2.55 16 38 H 0.11 2.42 8.14 -2.38 -0.02 2.41 16 39 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.09 2.02 5.96 -2.39 -0.01 2.00 16 44 H 0.11 1.59 7.99 -2.39 -0.02 1.57 16 45 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -79.39 372.10 1.61 -77.78 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: 0.13 Total: 42.89 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 6.09 Total: -8.55 kcal Atomic # 7 Polarization: -135.98 SS G_CDS: -5.20 Total: -141.18 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.90 Total: 48.17 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.26 Total: 2.74 kcal Total: -79.39 1.61 -77.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568028785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.897 kcal (2) G-P(sol) polarization free energy of solvation -79.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds