Wall clock time and date at job start Tue Mar 31 2020 18:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47306 * 2 1 4 4 N 1.46493 * 109.47420 * 175.24097 * 3 2 1 5 5 C 1.34783 * 119.99888 * 84.02669 * 4 3 2 6 6 O 1.21281 * 119.99765 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.99755 * 0.02562 * 5 4 3 8 8 C 1.50696 * 109.46771 * 179.97438 * 7 5 4 9 9 C 1.38304 * 119.92990 * 269.72584 * 8 7 5 10 10 C 1.38104 * 120.06396 * 179.73035 * 9 8 7 11 11 C 1.38877 * 119.93368 * 0.56324 * 10 9 8 12 12 O 1.35749 * 120.06854 * 179.68493 * 11 10 9 13 13 C 1.34834 * 116.99775 * 185.29541 * 12 11 10 14 14 H 1.08001 * 119.99826 * 4.21552 * 13 12 11 15 15 C 1.38656 * 119.99790 * 184.22151 * 13 12 11 16 16 N 1.31551 * 120.00020 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99828 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46914 * 89.99979 * 17 15 13 19 19 H 1.48499 * 109.46969 * 210.00161 * 17 15 13 20 20 H 1.48498 * 109.47140 * 329.99817 * 17 15 13 21 21 C 1.38877 * 119.86052 * 359.71423 * 11 10 9 22 22 C 1.38101 * 119.93048 * 359.97438 * 21 11 10 23 23 C 1.46507 * 120.00328 * 264.03351 * 4 3 2 24 24 H 1.08994 * 109.46620 * 174.59089 * 23 4 3 25 25 C 1.52997 * 109.47035 * 54.58834 * 23 4 3 26 26 C 1.50701 * 109.46420 * 294.58787 * 23 4 3 27 27 O 1.20823 * 120.00566 * 8.95051 * 26 23 4 28 28 O 1.34229 * 119.99471 * 188.94473 * 26 23 4 29 29 H 1.09004 * 109.46945 * 60.00006 * 1 2 3 30 30 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47268 * 299.99954 * 1 2 3 32 32 H 1.08994 * 109.47386 * 240.00085 * 2 1 3 33 33 H 1.08997 * 109.47185 * 119.99743 * 2 1 3 34 34 H 1.09004 * 109.46884 * 55.24243 * 3 2 1 35 35 H 1.08996 * 109.47133 * 295.24863 * 3 2 1 36 36 H 1.08994 * 109.47013 * 299.99920 * 7 5 4 37 37 H 1.08999 * 109.47125 * 59.99797 * 7 5 4 38 38 H 1.07997 * 119.96584 * 359.97438 * 9 8 7 39 39 H 1.08005 * 120.03273 * 180.27433 * 10 9 8 40 40 H 0.97008 * 120.00112 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.03338 * 179.97438 * 21 11 10 42 42 H 1.08007 * 119.96614 * 180.02562 * 22 21 11 43 43 H 1.08999 * 109.46640 * 180.02562 * 25 23 4 44 44 H 1.09003 * 109.47025 * 299.99692 * 25 23 4 45 45 H 1.08998 * 109.47049 * 60.00302 * 25 23 4 46 46 H 0.96697 * 117.00162 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5005 1.4442 0.1146 5 6 4.2630 1.2914 -0.9863 6 8 5.4721 1.2932 -0.8914 7 6 3.6131 1.1195 -2.3351 8 6 4.6784 0.9704 -3.3905 9 6 5.1731 2.0899 -4.0346 10 6 6.1533 1.9570 -4.9983 11 6 6.6339 0.6966 -5.3288 12 8 7.5928 0.5623 -6.2802 13 6 7.9358 -0.6938 -6.6304 14 1 7.4061 -1.5355 -6.2093 15 6 8.9686 -0.9048 -7.5312 16 7 9.6141 0.1206 -8.0437 17 14 9.4442 -2.6450 -8.0160 18 1 8.6557 -3.0610 -9.2035 19 1 10.8922 -2.6895 -8.3427 20 1 9.1631 -3.5677 -6.8869 21 6 6.1309 -0.4261 -4.6843 22 6 5.1554 -0.2860 -3.7169 23 6 4.1323 1.6117 1.4258 24 1 5.2111 1.4910 1.3272 25 6 3.5873 0.5587 2.3927 26 6 3.8273 2.9883 1.9579 27 8 3.0243 3.6909 1.3912 28 8 4.4479 3.4337 3.0617 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6088 1.9804 0.8443 35 1 1.7479 1.9312 -0.9295 36 1 2.9844 0.2292 -2.3246 37 1 3.0014 1.9937 -2.5577 38 1 4.7953 3.0693 -3.7808 39 1 6.5424 2.8319 -5.4978 40 1 10.3364 -0.0270 -8.6742 41 1 6.5024 -1.4076 -4.9394 42 1 4.7641 -1.1587 -3.2150 43 1 4.0571 0.6837 3.3683 44 1 2.5085 0.6795 2.4912 45 1 3.8079 -0.4369 2.0077 46 1 4.2199 4.3232 3.3648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573744197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:00 Heat of formation + Delta-G solvation = -131.543929 kcal Electronic energy + Delta-G solvation = -28829.023142 eV Core-core repulsion = 24684.572484 eV Total energy + Delta-G solvation = -4144.450658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.11042 -39.78710 -38.81724 -37.00669 -36.39539 -36.16435 -33.85549 -32.46599 -31.90526 -30.71796 -30.09582 -26.73341 -26.71867 -25.29990 -24.88306 -22.25501 -21.94060 -21.88478 -20.51906 -19.17896 -18.46269 -17.93792 -17.39808 -17.14702 -16.82655 -16.14237 -15.93815 -15.18496 -14.93204 -14.60707 -14.45417 -14.29922 -13.94041 -13.85158 -13.65079 -13.44736 -13.28216 -13.16538 -12.82036 -12.65013 -12.47344 -12.41073 -12.38777 -11.95010 -11.84903 -11.75690 -11.57502 -11.45270 -11.23130 -10.99814 -10.82441 -10.74243 -10.70546 -10.54284 -10.39183 -9.77584 -9.30486 -9.00707 -8.78250 -8.10165 -7.12124 -6.40984 -3.99321 1.83434 2.15969 2.29970 2.41560 2.68217 3.04522 3.15639 3.16351 3.21147 4.00177 4.32098 4.53569 4.55878 4.66629 4.68398 4.77955 4.91848 5.00449 5.09335 5.14637 5.16846 5.20829 5.26768 5.32796 5.40126 5.42686 5.50889 5.58563 5.66311 5.71562 5.75921 5.78902 5.90124 5.99197 6.13447 6.21708 6.26898 6.46914 6.74642 6.95726 7.08715 7.17367 7.29132 7.41325 7.49304 7.52971 7.88659 8.04227 8.15067 9.04736 9.75826 10.77273 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017981 B = 0.002390 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.793687 B =11713.237797 C =12189.121000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.152 4.152 3 C 0.113 3.887 4 N -0.605 5.605 5 C 0.517 3.483 6 O -0.515 6.515 7 C -0.076 4.076 8 C -0.172 4.172 9 C -0.059 4.059 10 C -0.191 4.191 11 C 0.157 3.843 12 O -0.178 6.178 13 C -0.390 4.390 14 H 0.092 0.908 15 C 0.038 3.962 16 N -0.863 5.863 17 Si 0.941 3.059 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.232 4.232 22 C -0.055 4.055 23 C 0.147 3.853 24 H 0.138 0.862 25 C -0.155 4.155 26 C 0.469 3.531 27 O -0.507 6.507 28 O -0.514 6.514 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.270 0.730 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.729 1.007 21.180 27.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.190 4.190 3 C -0.010 4.010 4 N -0.341 5.341 5 C 0.307 3.693 6 O -0.389 6.389 7 C -0.115 4.115 8 C -0.173 4.173 9 C -0.077 4.077 10 C -0.211 4.211 11 C 0.104 3.896 12 O -0.082 6.082 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.166 4.166 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.192 1.192 21 C -0.251 4.251 22 C -0.074 4.074 23 C 0.041 3.959 24 H 0.155 0.845 25 C -0.213 4.213 26 C 0.310 3.690 27 O -0.394 6.394 28 O -0.325 6.325 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.122 0.878 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -16.831 1.019 20.613 26.631 hybrid contribution 0.033 -0.175 0.081 0.195 sum -16.798 0.844 20.694 26.667 Atomic orbital electron populations 1.21697 0.94959 1.02055 1.02053 1.22170 0.96393 0.97172 1.03271 1.21674 0.78671 0.96660 1.04000 1.47914 1.07202 1.73589 1.05358 1.21236 0.87426 0.74947 0.85729 1.90743 1.14127 1.48127 1.85870 1.20470 0.97705 1.03765 0.89601 1.18642 1.03220 0.93883 1.01594 1.20408 0.95550 0.96796 0.94992 1.20146 1.02038 0.95454 1.03430 1.19380 0.88751 0.93310 0.88204 1.83987 1.46807 1.30605 1.46751 1.21324 1.17713 0.81595 1.26047 0.89097 1.25284 0.95337 0.99728 0.96213 1.70042 1.21304 1.30199 1.28304 0.85716 0.78163 0.80415 0.79156 1.19903 1.20283 1.19204 1.21102 1.02766 0.99215 1.02065 1.20492 0.95546 0.95563 0.95771 1.20424 1.02588 0.88275 0.84647 0.84486 1.22145 1.01894 0.98472 0.98759 1.24094 0.77479 0.89938 0.77522 1.90708 1.33203 1.57840 1.57666 1.84537 1.65744 1.38989 1.43255 0.92303 0.92333 0.92732 0.91168 0.91212 0.89824 0.89945 0.88701 0.88789 0.87434 0.86558 0.92060 0.85576 0.87847 0.90103 0.91488 0.90090 0.73091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.15 -1.01 5.96 -26.73 -0.16 -1.17 16 3 C 0.11 0.93 3.77 -4.04 -0.02 0.92 16 4 N -0.61 -6.55 2.17 -167.42 -0.36 -6.92 16 5 C 0.52 7.37 7.62 -10.98 -0.08 7.29 16 6 O -0.52 -9.61 15.37 5.56 0.09 -9.52 16 7 C -0.08 -0.99 4.44 -29.04 -0.13 -1.12 16 8 C -0.17 -3.06 4.38 -104.58 -0.46 -3.51 16 9 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 10 C -0.19 -4.27 9.99 -39.39 -0.39 -4.66 16 11 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 12 O -0.18 -5.24 9.76 0.04 0.00 -5.24 16 13 C -0.39 -11.16 9.46 30.89 0.29 -10.87 16 14 H 0.09 2.40 5.26 -52.49 -0.28 2.13 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.81 13.67 55.48 0.76 -25.06 16 17 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 C -0.23 -5.25 9.14 -39.39 -0.36 -5.61 16 22 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 23 C 0.15 1.44 3.13 -69.08 -0.22 1.22 16 24 H 0.14 1.55 6.92 -51.93 -0.36 1.19 16 25 C -0.15 -1.01 8.01 37.16 0.30 -0.71 16 26 C 0.47 4.69 7.43 36.01 0.27 4.96 16 27 O -0.51 -6.30 15.47 -18.75 -0.29 -6.59 16 28 O -0.51 -3.80 13.42 -39.26 -0.53 -4.33 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.51 6.48 -51.93 -0.34 0.17 16 33 H 0.07 0.44 6.04 -51.93 -0.31 0.13 16 34 H 0.08 0.69 6.44 -51.93 -0.33 0.36 16 35 H 0.08 0.66 6.69 -51.93 -0.35 0.32 16 36 H 0.09 1.01 6.38 -51.93 -0.33 0.68 16 37 H 0.09 1.05 7.36 -51.93 -0.38 0.67 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.13 2.84 5.69 -52.49 -0.30 2.54 16 42 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.38 6.71 -51.93 -0.35 0.03 16 45 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 46 H 0.41 1.36 9.10 45.56 0.41 1.77 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -36.30 381.50 -6.74 -43.04 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.42 Total: 5.01 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.71 Total: -12.00 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.40 Total: -31.97 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.73 Total: -25.68 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.30 -6.74 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573744197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.508 kcal (2) G-P(sol) polarization free energy of solvation -36.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds