Wall clock time and date at job start Tue Mar 31 2020 18:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46863 * 2 1 4 4 N 1.46503 * 109.47256 * 180.02562 * 3 2 1 5 5 C 1.34774 * 119.99994 * 269.99971 * 4 3 2 6 6 O 1.21280 * 119.99951 * 174.88315 * 5 4 3 7 7 C 1.50693 * 119.99965 * 354.88755 * 5 4 3 8 8 C 1.50698 * 109.47216 * 184.97553 * 7 5 4 9 9 C 1.38300 * 119.93450 * 269.72610 * 8 7 5 10 10 C 1.38099 * 120.07397 * 179.72534 * 9 8 7 11 11 C 1.38883 * 119.92750 * 0.56286 * 10 9 8 12 12 O 1.35750 * 120.06773 * 179.68643 * 11 10 9 13 13 C 1.34830 * 116.99862 * 185.76857 * 12 11 10 14 14 H 1.08004 * 120.00202 * 5.43322 * 13 12 11 15 15 C 1.38653 * 119.99869 * 185.43967 * 13 12 11 16 16 N 1.31558 * 120.00011 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99806 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47057 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.46938 * 119.99720 * 17 15 13 20 20 H 1.48504 * 109.46966 * 239.99695 * 17 15 13 21 21 C 1.38887 * 119.86059 * 359.71089 * 11 10 9 22 22 C 1.38094 * 119.93095 * 359.97438 * 21 11 10 23 23 C 1.46503 * 119.99885 * 89.99533 * 4 3 2 24 24 H 1.08995 * 109.47125 * 186.02193 * 23 4 3 25 25 C 1.53000 * 109.47164 * 306.01864 * 23 4 3 26 26 C 1.50703 * 109.47267 * 66.01674 * 23 4 3 27 27 O 1.20825 * 119.99789 * 335.12529 * 26 23 4 28 28 O 1.34225 * 119.99965 * 155.12381 * 26 23 4 29 29 H 1.08995 * 109.47008 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47061 * 300.00423 * 1 2 3 31 31 H 1.08996 * 109.47370 * 60.00048 * 1 2 3 32 32 H 1.08997 * 109.46970 * 239.99966 * 2 1 3 33 33 H 1.08993 * 109.46722 * 119.99595 * 2 1 3 34 34 H 1.09004 * 109.47628 * 59.99924 * 3 2 1 35 35 H 1.09006 * 109.47231 * 299.99617 * 3 2 1 36 36 H 1.09001 * 109.47202 * 304.97296 * 7 5 4 37 37 H 1.09004 * 109.47495 * 64.97474 * 7 5 4 38 38 H 1.08004 * 119.95891 * 359.97438 * 9 8 7 39 39 H 1.07997 * 120.03557 * 180.27759 * 10 9 8 40 40 H 0.97003 * 119.99712 * 180.02562 * 16 15 13 41 41 H 1.08003 * 120.02993 * 179.97438 * 21 11 10 42 42 H 1.08001 * 119.96513 * 179.97438 * 22 21 11 43 43 H 1.08999 * 109.46909 * 185.10506 * 25 23 4 44 44 H 1.09008 * 109.47012 * 305.09861 * 25 23 4 45 45 H 1.08992 * 109.47557 * 65.10287 * 25 23 4 46 46 H 0.96705 * 116.99873 * 180.02562 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1794 1.4425 1.1663 6 8 5.3885 1.3489 1.1678 7 6 3.4309 1.5585 2.4690 8 6 4.4146 1.6569 3.6065 9 6 4.8585 0.5084 4.2362 10 6 5.7643 0.5948 5.2751 11 6 6.2204 1.8375 5.6951 12 8 7.1059 1.9261 6.7202 13 6 7.4159 3.1638 7.1560 14 1 6.9007 4.0231 6.7528 15 6 8.3962 3.3334 8.1218 16 7 9.0235 2.2867 8.6133 17 14 8.8262 5.0483 8.7250 18 1 7.9836 6.0470 8.0194 19 1 8.5786 5.1354 10.1866 20 1 10.2586 5.3257 8.4482 21 6 5.7684 2.9894 5.0644 22 6 4.8676 2.8958 4.0219 23 6 4.2370 1.4427 -1.2697 24 1 5.3037 1.3350 -1.0738 25 6 3.7571 0.2760 -2.1354 26 6 3.9876 2.7409 -1.9933 27 8 2.9807 3.3714 -1.7733 28 8 4.8841 3.1967 -2.8823 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8901 36 1 2.8061 2.4515 2.4509 37 1 2.8028 0.6784 2.6070 38 1 4.4995 -0.4574 3.9124 39 1 6.1140 -0.3028 5.7634 40 1 9.7091 2.4053 9.2892 41 1 6.1210 3.9572 5.3891 42 1 4.5154 3.7912 3.5313 43 1 4.3631 0.2213 -3.0397 44 1 3.8536 -0.6549 -1.5765 45 1 2.7128 0.4303 -2.4067 46 1 4.6806 4.0341 -3.3210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573744202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:04 Heat of formation + Delta-G solvation = -155.309456 kcal Electronic energy + Delta-G solvation = -28825.151455 eV Core-core repulsion = 24679.670247 eV Total energy + Delta-G solvation = -4145.481209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.97721 -40.96521 -40.38433 -38.37321 -37.65599 -36.94595 -34.54248 -34.27093 -33.15898 -31.88360 -31.75150 -28.24193 -27.35753 -27.05015 -25.81403 -23.64149 -23.21716 -22.51959 -21.87885 -20.13998 -19.84308 -19.32642 -18.83440 -18.25050 -17.85016 -17.11220 -16.70773 -16.54412 -16.35792 -15.91915 -15.85120 -15.51376 -15.45141 -15.09032 -14.76080 -14.53976 -14.40204 -14.28278 -14.01554 -13.78955 -13.58151 -13.42213 -13.04846 -13.02910 -12.94177 -12.82616 -12.57912 -12.50429 -12.41740 -12.30591 -12.22619 -12.10497 -12.02904 -11.66400 -11.39142 -11.20582 -10.92485 -10.75208 -9.85084 -9.76961 -8.91069 -8.48060 -6.15993 0.60815 0.64128 1.00980 1.33617 1.41287 1.44739 1.52325 1.72475 2.17004 2.27782 2.81522 3.14880 3.50818 3.62117 3.84509 3.91909 3.99122 4.03919 4.11471 4.14061 4.18051 4.22276 4.40378 4.51017 4.58290 4.60215 4.64585 4.65899 4.75213 4.78754 4.85135 5.02892 5.08010 5.09416 5.13624 5.21369 5.28832 5.31136 5.46215 5.51921 5.55829 5.57315 5.71270 5.76404 6.02303 6.17478 6.29124 6.88047 6.96730 7.10132 7.78007 8.75734 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.002452 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.304517 B =11415.717222 C =12222.756142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.100 3.900 4 N -0.597 5.597 5 C 0.516 3.484 6 O -0.568 6.568 7 C -0.075 4.075 8 C -0.147 4.147 9 C -0.053 4.053 10 C -0.204 4.204 11 C 0.114 3.886 12 O -0.233 6.233 13 C -0.413 4.413 14 H 0.099 0.901 15 C -0.024 4.024 16 N -0.921 5.921 17 Si 1.019 2.981 18 H -0.252 1.252 19 H -0.265 1.265 20 H -0.269 1.269 21 C -0.243 4.243 22 C -0.063 4.063 23 C 0.140 3.860 24 H 0.116 0.884 25 C -0.147 4.147 26 C 0.475 3.525 27 O -0.531 6.531 28 O -0.511 6.511 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.149 0.851 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.740 -2.158 -24.678 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.022 4.022 4 N -0.331 5.331 5 C 0.307 3.693 6 O -0.446 6.446 7 C -0.114 4.114 8 C -0.148 4.148 9 C -0.070 4.070 10 C -0.223 4.223 11 C 0.064 3.936 12 O -0.139 6.139 13 C -0.489 4.489 14 H 0.117 0.883 15 C -0.221 4.221 16 N -0.559 5.559 17 Si 0.838 3.162 18 H -0.176 1.176 19 H -0.190 1.190 20 H -0.194 1.194 21 C -0.262 4.262 22 C -0.081 4.081 23 C 0.034 3.966 24 H 0.134 0.866 25 C -0.204 4.204 26 C 0.317 3.683 27 O -0.420 6.420 28 O -0.324 6.324 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.151 0.849 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -18.014 -2.603 -24.170 30.257 hybrid contribution 0.696 1.365 0.321 1.566 sum -17.318 -1.238 -23.849 29.499 Atomic orbital electron populations 1.21686 0.94067 1.02445 1.02419 1.22123 0.97047 0.95813 1.03380 1.22051 0.76581 0.98280 1.05244 1.47918 1.08176 1.73522 1.03520 1.21292 0.87582 0.74356 0.86111 1.90749 1.16316 1.49929 1.87573 1.20559 0.96565 1.07082 0.87170 1.19210 1.03159 0.92629 0.99770 1.20853 0.94273 0.98942 0.92974 1.20446 1.04162 0.94674 1.03057 1.19939 0.90121 0.95359 0.88183 1.83949 1.54382 1.31831 1.43777 1.21838 1.21655 0.82922 1.22468 0.88349 1.26604 0.94835 1.04476 0.96181 1.70194 1.24904 1.32200 1.28648 0.84525 0.78667 0.74498 0.78460 1.17587 1.19022 1.19379 1.21203 1.05106 0.97881 1.02059 1.20897 0.94793 0.98043 0.94365 1.20556 1.00643 0.90589 0.84843 0.86576 1.22159 1.03032 0.95533 0.99718 1.24072 0.80081 0.87342 0.76808 1.90668 1.29065 1.58988 1.63316 1.84519 1.49765 1.44920 1.53193 0.91897 0.92064 0.92372 0.90652 0.91556 0.88907 0.89016 0.86099 0.84961 0.83377 0.86756 0.91808 0.86610 0.84918 0.88906 0.89539 0.90276 0.70897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 71.98 0.71 -0.40 16 2 C -0.15 -1.38 5.99 30.59 0.18 -1.19 16 3 C 0.10 1.30 4.22 86.38 0.36 1.67 16 4 N -0.60 -11.18 2.30 -802.00 -1.84 -13.02 16 5 C 0.52 13.14 7.65 87.66 0.67 13.81 16 6 O -0.57 -20.22 15.39 -3.03 -0.05 -20.27 16 7 C -0.07 -1.62 4.39 29.10 0.13 -1.49 16 8 C -0.15 -4.79 4.38 -19.83 -0.09 -4.88 16 9 C -0.05 -1.85 9.69 22.25 0.22 -1.64 16 10 C -0.20 -9.19 9.99 22.39 0.22 -8.96 16 11 C 0.11 6.01 6.65 22.58 0.15 6.16 16 12 O -0.23 -14.62 9.76 -22.74 -0.22 -14.84 16 13 C -0.41 -24.98 9.44 67.92 0.64 -24.34 16 14 H 0.10 5.52 5.30 -2.91 -0.02 5.51 16 15 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 16 N -0.92 -58.07 13.67 21.61 0.30 -57.78 16 17 Si 1.02 44.25 29.55 68.60 2.03 46.27 16 18 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 C -0.24 -11.37 9.13 22.39 0.20 -11.16 16 22 C -0.06 -2.35 9.69 22.25 0.22 -2.14 16 23 C 0.14 2.46 3.15 44.25 0.14 2.60 16 24 H 0.12 2.54 6.92 -2.39 -0.02 2.52 16 25 C -0.15 -1.53 7.78 71.98 0.56 -0.97 16 26 C 0.48 8.58 7.52 71.24 0.54 9.11 16 27 O -0.53 -11.56 15.06 21.97 0.33 -11.23 16 28 O -0.51 -7.03 13.42 -51.37 -0.69 -7.72 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.65 5.37 -2.39 -0.01 0.64 16 33 H 0.07 0.67 7.69 -2.39 -0.02 0.65 16 34 H 0.09 1.05 6.31 -2.38 -0.02 1.04 16 35 H 0.09 1.31 6.08 -2.38 -0.01 1.29 16 36 H 0.12 2.06 7.26 -2.39 -0.02 2.04 16 37 H 0.13 1.99 7.63 -2.39 -0.02 1.98 16 38 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 40 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.12 5.52 5.72 -2.91 -0.02 5.50 16 42 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.09 0.87 7.65 -2.38 -0.02 0.85 16 45 H 0.08 0.67 6.86 -2.39 -0.02 0.66 16 46 H 0.43 2.22 9.10 -74.05 -0.67 1.55 16 Total: -1.00 -84.87 382.48 5.52 -79.35 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.35 Total: 23.99 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 5.32 Total: -24.75 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -1.55 Total: -70.80 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -0.63 Total: -54.06 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -84.87 5.52 -79.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573744202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.964 kcal (2) G-P(sol) polarization free energy of solvation -84.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds