Wall clock time and date at job start Tue Mar 31 2020 19:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47381 * 2 1 4 4 C 1.50707 * 109.46945 * 120.00404 * 2 1 3 5 5 C 1.38233 * 120.00023 * 59.72571 * 4 2 1 6 6 C 1.38235 * 119.99558 * 179.78846 * 5 4 2 7 7 C 1.38232 * 120.00101 * 0.43547 * 6 5 4 8 8 C 1.38227 * 120.00306 * 359.81689 * 7 6 5 9 9 C 1.38232 * 119.99608 * 239.99476 * 4 2 1 10 10 C 1.53002 * 109.46753 * 239.99836 * 2 1 3 11 11 C 1.53005 * 109.46753 * 179.97438 * 10 2 1 12 12 O 1.42897 * 109.47271 * 300.00303 * 10 2 1 13 13 C 1.50697 * 109.46923 * 60.00552 * 10 2 1 14 14 O 1.21295 * 120.00288 * 24.71839 * 13 10 2 15 15 N 1.34781 * 119.99831 * 204.44985 * 13 10 2 16 16 C 1.37092 * 120.00132 * 355.43551 * 15 13 10 17 17 H 1.08006 * 120.00217 * 321.25912 * 16 15 13 18 18 C 1.38947 * 120.00267 * 141.25360 * 16 15 13 19 19 N 1.31408 * 120.00211 * 159.01179 * 18 16 15 20 20 Si 1.86806 * 119.99639 * 339.01545 * 18 16 15 21 21 H 1.48496 * 109.47479 * 94.84797 * 20 18 16 22 22 H 1.48500 * 109.46691 * 214.84731 * 20 18 16 23 23 H 1.48496 * 109.47058 * 334.84082 * 20 18 16 24 24 C 1.46503 * 119.99704 * 175.43830 * 15 13 10 25 25 C 1.53002 * 109.46905 * 84.14760 * 24 15 13 26 26 C 1.50702 * 109.46915 * 179.97438 * 25 24 15 27 27 O 1.20832 * 120.00086 * 0.02562 * 26 25 24 28 28 O 1.34232 * 119.99902 * 179.97438 * 26 25 24 29 29 H 1.09008 * 109.46455 * 300.00013 * 1 2 3 30 30 H 1.08998 * 109.47069 * 59.99764 * 1 2 3 31 31 H 1.08993 * 109.47381 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.00307 * 359.97438 * 5 4 2 33 33 H 1.08006 * 119.99870 * 180.27313 * 6 5 4 34 34 H 1.08000 * 119.99981 * 179.83382 * 7 6 5 35 35 H 1.08003 * 120.00574 * 179.97438 * 8 7 6 36 36 H 1.08001 * 120.00661 * 359.97438 * 9 4 2 37 37 H 1.08993 * 109.47381 * 300.00164 * 11 10 2 38 38 H 1.08998 * 109.47069 * 60.00400 * 11 10 2 39 39 H 1.08998 * 109.46387 * 180.02562 * 11 10 2 40 40 H 0.96701 * 114.00370 * 60.00094 * 12 10 2 41 41 H 0.97006 * 120.00182 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.46592 * 204.14442 * 24 15 13 43 43 H 1.08994 * 109.47281 * 324.14374 * 24 15 13 44 44 H 1.09004 * 109.47236 * 299.99288 * 25 24 15 45 45 H 1.08994 * 109.47465 * 59.99727 * 25 24 15 46 46 H 0.96705 * 116.99949 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.6937 -2.0323 1.4520 6 6 2.1581 -2.6852 2.5785 7 6 2.9537 -2.0138 3.4879 8 6 3.2880 -0.6905 3.2690 9 6 2.8271 -0.0388 2.1403 10 6 2.0400 -0.7213 -1.2493 11 6 3.5700 -0.7208 -1.2496 12 8 1.5636 -2.0685 -1.2493 13 6 1.5377 -0.0108 -2.4797 14 8 1.2445 1.1648 -2.4240 15 7 1.4194 -0.6804 -3.6434 16 6 1.8434 -1.9811 -3.7320 17 1 2.7466 -2.2903 -3.2269 18 6 1.1111 -2.9018 -4.4715 19 7 1.6851 -4.0012 -4.9058 20 14 -0.6894 -2.5765 -4.8484 21 1 -0.8081 -1.9377 -6.1836 22 1 -1.4353 -3.8605 -4.8458 23 1 -1.2559 -1.6729 -3.8151 24 6 0.8377 -0.0182 -4.8136 25 6 1.9207 0.7869 -5.5347 26 6 1.3225 1.4676 -6.7388 27 8 0.1502 1.3239 -6.9938 28 8 2.0918 2.2343 -7.5275 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.0688 -2.5557 0.7435 33 1 1.8972 -3.7193 2.7493 34 1 3.3143 -2.5231 4.3693 35 1 3.9092 -0.1657 3.9797 36 1 3.0885 0.9951 1.9693 37 1 3.9330 0.3070 -1.2498 38 1 3.9337 -1.2343 -0.3596 39 1 3.9332 -1.2342 -2.1398 40 1 0.5996 -2.1449 -1.2493 41 1 1.1740 -4.6437 -5.4224 42 1 0.4313 -0.7691 -5.4913 43 1 0.0399 0.6516 -4.4929 44 1 2.3271 1.5378 -4.8570 45 1 2.7185 0.1171 -5.8554 46 1 1.6635 2.6500 -8.2884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593702814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:17 Heat of formation + Delta-G solvation = -158.254856 kcal Electronic energy + Delta-G solvation = -30707.286187 eV Core-core repulsion = 26561.677257 eV Total energy + Delta-G solvation = -4145.608931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.80251 -41.25046 -40.01189 -37.94962 -37.28050 -36.95030 -34.39595 -34.10226 -32.58786 -31.66142 -31.29628 -30.17332 -26.91161 -26.60576 -25.08907 -23.82166 -23.28562 -22.31502 -21.36702 -20.52266 -19.46103 -19.13647 -18.29733 -17.89171 -17.45909 -17.23287 -16.87936 -16.52745 -16.32578 -16.00758 -15.72024 -15.44518 -15.00442 -14.86885 -14.68668 -14.45064 -14.19685 -14.08972 -13.87064 -13.58852 -13.46825 -13.38016 -13.22924 -13.05058 -12.87364 -12.78225 -12.63588 -12.58055 -12.39376 -12.28208 -12.00154 -11.82072 -11.77590 -11.69945 -11.61760 -11.07815 -11.06599 -10.07189 -9.71157 -9.63253 -9.43593 -8.40757 -5.98162 0.57895 0.66535 1.10586 1.20204 1.33940 1.38658 1.73344 1.96037 2.21208 2.63646 2.98905 3.07956 3.45636 3.71163 3.79085 3.83640 3.90191 4.14013 4.17950 4.22707 4.29665 4.31221 4.44565 4.47971 4.54491 4.64309 4.64787 4.75267 4.80055 4.82711 4.86183 4.93058 5.02014 5.13738 5.20934 5.26336 5.28370 5.37410 5.42225 5.51644 5.71551 5.77915 5.91169 6.17724 6.26934 6.36459 6.78095 6.92777 7.06129 7.42758 7.73620 8.72250 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.004075 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.586143 B = 6869.817404 C = 7833.773319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 H 0.086 0.914 4 C -0.074 4.074 5 C -0.111 4.111 6 C -0.134 4.134 7 C -0.130 4.130 8 C -0.127 4.127 9 C -0.127 4.127 10 C 0.151 3.849 11 C -0.126 4.126 12 O -0.522 6.522 13 C 0.455 3.545 14 O -0.603 6.603 15 N -0.462 5.462 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.040 3.960 19 N -0.894 5.894 20 Si 0.902 3.098 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.110 3.890 25 C -0.118 4.118 26 C 0.495 3.505 27 O -0.553 6.553 28 O -0.505 6.505 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.369 0.631 41 H 0.275 0.725 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.625 6.671 9.794 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 H 0.104 0.896 4 C -0.075 4.075 5 C -0.129 4.129 6 C -0.152 4.152 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.145 4.145 10 C 0.107 3.893 11 C -0.183 4.183 12 O -0.327 6.327 13 C 0.245 3.755 14 O -0.488 6.488 15 N -0.182 5.182 16 C -0.427 4.427 17 H 0.120 0.880 18 C -0.164 4.164 19 N -0.532 5.532 20 Si 0.730 3.270 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.014 4.014 25 C -0.156 4.156 26 C 0.339 3.661 27 O -0.444 6.444 28 O -0.318 6.318 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.146 0.854 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.217 0.783 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 2.981 6.704 9.962 12.372 hybrid contribution -1.969 0.119 -1.359 2.396 sum 1.012 6.823 8.603 11.027 Atomic orbital electron populations 1.21842 0.94196 1.02001 1.02222 1.20471 0.96487 0.99264 0.91244 0.89611 1.19633 0.98187 0.94514 0.95122 1.21342 1.00185 0.94269 0.97135 1.21397 0.98608 1.00540 0.94615 1.21415 0.98396 0.95077 0.99906 1.21361 1.00338 0.95189 0.97627 1.21258 0.98077 1.00420 0.94759 1.20957 0.96027 0.82727 0.89598 1.21656 0.91226 1.02402 1.03039 1.86736 1.26166 1.23743 1.96066 1.21765 0.80800 0.87387 0.85580 1.90542 1.55033 1.17304 1.85925 1.43892 1.55489 1.12149 1.06686 1.18980 1.08949 0.82372 1.32362 0.88020 1.25593 0.99357 0.95213 0.96200 1.69779 1.37176 1.11945 1.34270 0.86553 0.84370 0.77216 0.78877 1.20844 1.21426 1.18869 1.21408 0.95212 0.96058 0.88689 1.21579 1.00730 1.00504 0.92817 1.23352 0.84066 0.75251 0.83409 1.90701 1.19468 1.61453 1.72818 1.84505 1.45940 1.60041 1.41322 0.90992 0.93537 0.92166 0.85824 0.85136 0.84205 0.84028 0.85376 0.90707 0.90778 0.92528 0.78320 0.91537 0.91797 0.91856 0.86591 0.86353 0.70969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 8.41 71.98 0.61 -3.76 16 2 C -0.06 -1.70 1.70 -11.54 -0.02 -1.72 16 3 H 0.09 2.69 7.60 -2.39 -0.02 2.67 16 4 C -0.07 -2.04 3.52 -19.87 -0.07 -2.11 16 5 C -0.11 -3.06 8.29 22.27 0.18 -2.88 16 6 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 7 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 8 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 9 C -0.13 -3.04 9.67 22.27 0.22 -2.82 16 10 C 0.15 5.35 0.39 -11.54 0.00 5.34 16 11 C -0.13 -4.22 8.43 71.98 0.61 -3.61 16 12 O -0.52 -19.46 7.47 -148.98 -1.11 -20.57 16 13 C 0.45 18.80 5.71 87.66 0.50 19.30 16 14 O -0.60 -26.41 14.59 -3.08 -0.04 -26.45 16 15 N -0.46 -20.31 2.17 -635.53 -1.38 -21.69 16 16 C -0.30 -14.38 7.35 84.04 0.62 -13.76 16 17 H 0.10 5.28 5.63 -2.91 -0.02 5.26 16 18 C 0.04 2.02 5.28 84.93 0.45 2.47 16 19 N -0.89 -48.20 13.96 21.66 0.30 -47.90 16 20 Si 0.90 41.68 25.03 68.60 1.72 43.39 16 21 H -0.28 -13.34 6.68 99.48 0.66 -12.68 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.11 4.71 3.19 86.38 0.28 4.99 16 25 C -0.12 -4.21 6.09 29.85 0.18 -4.02 16 26 C 0.50 16.43 8.33 71.24 0.59 17.02 16 27 O -0.55 -21.87 16.74 21.95 0.37 -21.50 16 28 O -0.50 -12.23 13.42 -51.44 -0.69 -12.92 16 29 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.05 1.62 6.45 -2.39 -0.02 1.60 16 31 H 0.06 1.69 6.01 -2.39 -0.01 1.68 16 32 H 0.12 3.55 5.51 -2.91 -0.02 3.53 16 33 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.13 2.70 7.95 -2.91 -0.02 2.67 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.34 7.22 -2.39 -0.02 2.32 16 39 H 0.06 2.11 6.51 -2.39 -0.02 2.09 16 40 H 0.37 13.00 6.99 -74.06 -0.52 12.48 16 41 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 42 H 0.06 2.96 3.59 -2.39 -0.01 2.95 16 43 H 0.06 2.82 7.64 -2.39 -0.02 2.80 16 44 H 0.12 3.97 8.01 -2.39 -0.02 3.95 16 45 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 46 H 0.43 6.06 9.10 -74.05 -0.67 5.39 16 Total: -1.00 -63.49 365.90 3.77 -59.72 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -0.20 Total: 41.32 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 4.81 Total: 6.61 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -1.08 Total: -69.59 kcal Atomic # 8 Polarization: -79.97 SS G_CDS: -1.48 Total: -81.45 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.72 Total: 43.39 kcal Total: -63.49 3.77 -59.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593702814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.539 kcal (2) G-P(sol) polarization free energy of solvation -63.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds