Wall clock time and date at job start Tue Mar 31 2020 19:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46996 * 2 1 4 4 C 1.50698 * 109.46833 * 240.00417 * 2 1 3 5 5 C 1.38234 * 120.00006 * 310.33966 * 4 2 1 6 6 C 1.38241 * 119.99941 * 179.79290 * 5 4 2 7 7 C 1.38229 * 120.00105 * 0.44351 * 6 5 4 8 8 C 1.38240 * 119.99771 * 359.81224 * 7 6 5 9 9 C 1.38233 * 120.00232 * 359.97438 * 8 7 6 10 10 C 1.52993 * 109.47268 * 120.00255 * 2 1 3 11 11 C 1.53008 * 109.46916 * 299.81879 * 10 2 1 12 12 O 1.42903 * 109.47268 * 59.81470 * 10 2 1 13 13 C 1.50699 * 109.47574 * 179.82125 * 10 2 1 14 14 O 1.21293 * 119.99767 * 19.63583 * 13 10 2 15 15 N 1.34776 * 119.99991 * 199.63964 * 13 10 2 16 16 C 1.37096 * 120.00319 * 4.15406 * 15 13 10 17 17 H 1.08003 * 119.99438 * 326.00261 * 16 15 13 18 18 C 1.38948 * 120.00288 * 146.00119 * 16 15 13 19 19 N 1.31413 * 119.99690 * 339.03857 * 18 16 15 20 20 Si 1.86798 * 120.00433 * 159.03765 * 18 16 15 21 21 H 1.48503 * 109.46932 * 89.99450 * 20 18 16 22 22 H 1.48491 * 109.47160 * 210.00269 * 20 18 16 23 23 H 1.48504 * 109.46926 * 330.00372 * 20 18 16 24 24 C 1.46504 * 119.99679 * 184.15304 * 15 13 10 25 25 C 1.52997 * 109.46816 * 87.05231 * 24 15 13 26 26 C 1.50701 * 109.46895 * 179.97438 * 25 24 15 27 27 O 1.20828 * 120.00010 * 0.02562 * 26 25 24 28 28 O 1.34227 * 120.00174 * 180.02562 * 26 25 24 29 29 H 1.08998 * 109.46963 * 305.83757 * 1 2 3 30 30 H 1.08997 * 109.46946 * 185.83356 * 1 2 3 31 31 H 1.09000 * 109.47005 * 65.83635 * 1 2 3 32 32 H 1.07999 * 119.99965 * 0.02562 * 5 4 2 33 33 H 1.07999 * 119.99658 * 180.27518 * 6 5 4 34 34 H 1.07991 * 120.00193 * 179.83345 * 7 6 5 35 35 H 1.08003 * 119.99609 * 180.02562 * 8 7 6 36 36 H 1.07995 * 120.00306 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.46888 * 65.61462 * 11 10 2 38 38 H 1.08999 * 109.46808 * 185.60621 * 11 10 2 39 39 H 1.08993 * 109.46924 * 305.61061 * 11 10 2 40 40 H 0.96700 * 113.99480 * 67.26630 * 12 10 2 41 41 H 0.97001 * 119.99791 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.47040 * 207.05553 * 24 15 13 43 43 H 1.09000 * 109.47104 * 327.05192 * 24 15 13 44 44 H 1.08997 * 109.47579 * 299.99991 * 25 24 15 45 45 H 1.09000 * 109.47316 * 60.00090 * 25 24 15 46 46 H 0.96703 * 117.00223 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.5320 -1.9555 -1.5624 6 6 1.9896 -2.6052 -2.6935 7 6 2.9541 -2.0138 -3.4877 8 6 3.4582 -0.7709 -3.1529 9 6 2.9975 -0.1193 -2.0243 10 6 2.0400 -0.7213 1.2491 11 6 1.5337 0.0026 2.4985 12 8 1.5602 -2.0673 1.2513 13 6 3.5470 -0.7251 1.2470 14 8 4.1545 0.0730 0.5650 15 7 4.2197 -1.6155 2.0028 16 6 3.5355 -2.5723 2.7071 17 1 2.5642 -2.3461 3.1218 18 6 4.0916 -3.8328 2.8873 19 7 5.0360 -4.2562 2.0775 20 14 3.4968 -4.9257 4.2806 21 1 2.3677 -5.7645 3.8043 22 1 4.6080 -5.8011 4.7320 23 1 3.0415 -4.0799 5.4132 24 6 5.6821 -1.5609 2.0717 25 6 6.1046 -0.5917 3.1775 26 6 7.6089 -0.5360 3.2488 27 8 8.2747 -1.2027 2.4924 28 8 8.2092 0.2543 4.1526 29 1 -0.3633 0.6017 0.8331 30 1 -0.3633 -1.0223 0.1044 31 1 -0.3633 0.4207 -0.9376 32 1 0.7809 -2.4191 -0.9400 33 1 1.5955 -3.5761 -2.9552 34 1 3.3136 -2.5225 -4.3699 35 1 4.2115 -0.3087 -3.7737 36 1 3.3910 0.8519 -1.7629 37 1 0.4483 -0.0808 2.5518 38 1 1.9769 -0.4502 3.3854 39 1 1.8153 1.0543 2.4481 40 1 1.9309 -2.6181 0.5482 41 1 5.4239 -5.1364 2.2031 42 1 6.0728 -2.5546 2.2906 43 1 6.0782 -1.2171 1.1162 44 1 5.7139 0.4020 2.9586 45 1 5.7085 -0.9355 4.1330 46 1 9.1762 0.2564 4.1606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593702816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:24 Heat of formation + Delta-G solvation = -144.641040 kcal Electronic energy + Delta-G solvation = -31156.350955 eV Core-core repulsion = 27011.332364 eV Total energy + Delta-G solvation = -4145.018591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.13216 -39.74137 -38.32113 -36.38441 -35.75320 -35.02902 -33.08934 -31.87606 -30.84162 -30.42202 -30.09957 -28.16407 -25.17050 -25.00332 -23.89647 -22.11201 -21.75531 -20.71597 -19.67225 -18.97624 -17.88572 -17.53719 -16.55048 -16.30490 -16.00217 -15.60364 -15.05994 -15.02902 -14.62750 -14.43207 -14.24180 -13.80866 -13.48438 -13.21972 -12.94836 -12.76884 -12.62524 -12.35004 -12.25899 -12.07433 -11.98501 -11.82114 -11.63305 -11.30463 -11.27076 -11.21718 -11.15825 -10.97661 -10.87283 -10.80572 -10.41240 -10.34708 -10.25909 -10.14270 -10.02724 -9.37661 -9.10260 -8.43092 -8.39133 -8.03505 -7.51347 -6.31993 -3.97711 1.80325 1.89200 2.66186 3.14103 3.25070 3.27315 3.39296 3.79202 4.14931 4.23489 4.57625 4.95797 5.07297 5.09186 5.27770 5.37843 5.39183 5.53523 5.59220 5.68102 5.77919 5.81813 5.82800 5.91264 5.96966 6.02934 6.08590 6.14739 6.24166 6.31431 6.37764 6.41019 6.46732 6.49064 6.63072 6.69556 6.81015 6.88452 6.92206 6.95805 7.16810 7.37600 7.47587 7.60892 7.86406 8.29646 8.32488 8.46788 9.09990 9.45565 9.86722 10.68703 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009789 B = 0.005222 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.594973 B = 5360.590636 C = 6240.621507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 H 0.086 0.914 4 C -0.066 4.066 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.128 4.128 8 C -0.126 4.126 9 C -0.083 4.083 10 C 0.146 3.854 11 C -0.136 4.136 12 O -0.533 6.533 13 C 0.442 3.558 14 O -0.594 6.594 15 N -0.427 5.427 16 C -0.327 4.327 17 H 0.110 0.890 18 C 0.038 3.962 19 N -0.860 5.860 20 Si 0.911 3.089 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.270 1.270 24 C 0.119 3.881 25 C -0.123 4.123 26 C 0.482 3.518 27 O -0.513 6.513 28 O -0.525 6.525 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.377 0.623 41 H 0.268 0.732 42 H 0.123 0.877 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 6.053 -1.780 7.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 H 0.104 0.896 4 C -0.066 4.066 5 C -0.143 4.143 6 C -0.142 4.142 7 C -0.146 4.146 8 C -0.144 4.144 9 C -0.101 4.101 10 C 0.101 3.899 11 C -0.193 4.193 12 O -0.340 6.340 13 C 0.230 3.770 14 O -0.479 6.479 15 N -0.144 5.144 16 C -0.454 4.454 17 H 0.128 0.872 18 C -0.167 4.167 19 N -0.498 5.498 20 Si 0.738 3.262 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.195 1.195 24 C -0.005 4.005 25 C -0.162 4.162 26 C 0.325 3.675 27 O -0.400 6.400 28 O -0.337 6.337 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.227 0.773 41 H 0.079 0.921 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.122 0.878 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -4.852 6.260 -1.838 8.130 hybrid contribution 1.008 -0.968 0.250 1.420 sum -3.844 5.292 -1.589 6.731 Atomic orbital electron populations 1.21806 0.94214 1.02615 1.00952 1.20605 0.95661 0.99884 0.92100 0.89591 1.19730 0.96518 0.94714 0.95681 1.21145 1.00918 0.95015 0.97205 1.21028 0.98017 0.99546 0.95561 1.21023 0.97873 0.95790 0.99952 1.21077 1.00002 0.95663 0.97701 1.21040 0.95220 1.00364 0.93428 1.20935 0.90478 0.84244 0.94199 1.21762 1.01580 0.99111 0.96894 1.86508 1.69758 1.20252 1.57527 1.21055 0.90130 0.84764 0.81021 1.90521 1.70016 1.43456 1.43954 1.43476 1.04382 1.27044 1.39547 1.19788 1.04094 0.90630 1.30895 0.87230 1.25334 0.96969 0.97074 0.97362 1.69902 1.27041 1.18975 1.33843 0.86183 0.78286 0.79939 0.81771 1.20292 1.21150 1.19492 1.21280 0.82637 1.01125 0.95456 1.21845 0.85939 1.03942 1.04486 1.23794 0.92509 0.75034 0.76212 1.90707 1.66851 1.41634 1.40856 1.84590 1.27625 1.64070 1.57400 0.92498 0.91617 0.93121 0.85573 0.86630 0.86909 0.86817 0.86053 0.91593 0.90852 0.91867 0.77259 0.92132 0.85947 0.91911 0.88723 0.87839 0.74162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.18 37.16 0.30 -1.58 16 2 C -0.06 -1.04 1.69 -91.77 -0.16 -1.20 16 3 H 0.09 1.45 7.68 -51.93 -0.40 1.05 16 4 C -0.07 -1.15 3.93 -104.62 -0.41 -1.56 16 5 C -0.12 -2.04 7.27 -39.58 -0.29 -2.33 16 6 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 7 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 8 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 9 C -0.08 -1.46 8.31 -39.58 -0.33 -1.79 16 10 C 0.15 2.69 0.39 -91.77 -0.04 2.66 16 11 C -0.14 -2.21 8.08 37.16 0.30 -1.91 16 12 O -0.53 -10.30 8.45 -35.23 -0.30 -10.60 16 13 C 0.44 9.81 6.00 -10.99 -0.07 9.75 16 14 O -0.59 -14.13 13.74 5.55 0.08 -14.05 16 15 N -0.43 -9.97 2.55 -114.81 -0.29 -10.27 16 16 C -0.33 -7.72 7.19 -14.93 -0.11 -7.83 16 17 H 0.11 2.55 5.14 -52.48 -0.27 2.28 16 18 C 0.04 0.91 4.98 -17.47 -0.09 0.83 16 19 N -0.86 -22.37 11.22 55.50 0.62 -21.75 16 20 Si 0.91 19.29 29.60 -169.99 -5.03 14.26 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 C 0.12 2.80 4.27 -4.04 -0.02 2.78 16 25 C -0.12 -2.39 6.12 -27.88 -0.17 -2.57 16 26 C 0.48 8.88 8.33 36.01 0.30 9.18 16 27 O -0.51 -11.05 16.74 -18.75 -0.31 -11.36 16 28 O -0.53 -7.51 13.42 -39.25 -0.53 -8.04 16 29 H 0.06 0.69 6.89 -51.93 -0.36 0.34 16 30 H 0.06 0.91 6.50 -51.93 -0.34 0.57 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.13 1.92 5.81 -52.49 -0.31 1.62 16 33 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.12 2.17 7.72 -52.49 -0.41 1.77 16 37 H 0.07 0.94 6.88 -51.93 -0.36 0.58 16 38 H 0.07 1.28 6.77 -51.93 -0.35 0.92 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.38 7.64 6.11 45.56 0.28 7.92 16 41 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 42 H 0.12 3.18 5.22 -51.93 -0.27 2.90 16 43 H 0.06 1.61 7.41 -51.93 -0.39 1.22 16 44 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 45 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 46 H 0.40 3.81 9.10 45.56 0.41 4.22 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -29.72 368.22 -7.01 -36.74 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -4.84 Total: 22.25 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.96 Total: -2.73 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.33 Total: -32.02 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -1.06 Total: -44.05 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.72 -7.01 -36.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593702816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.905 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds