Wall clock time and date at job start Tue Mar 31 2020 19:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46996 * 2 1 4 4 C 1.50698 * 109.46833 * 240.00417 * 2 1 3 5 5 C 1.38234 * 120.00006 * 310.33966 * 4 2 1 6 6 C 1.38241 * 119.99941 * 179.79290 * 5 4 2 7 7 C 1.38229 * 120.00105 * 0.44351 * 6 5 4 8 8 C 1.38240 * 119.99771 * 359.81224 * 7 6 5 9 9 C 1.38233 * 120.00232 * 359.97438 * 8 7 6 10 10 C 1.52993 * 109.47268 * 120.00255 * 2 1 3 11 11 C 1.53008 * 109.46916 * 299.81879 * 10 2 1 12 12 O 1.42903 * 109.47268 * 59.81470 * 10 2 1 13 13 C 1.50699 * 109.47574 * 179.82125 * 10 2 1 14 14 O 1.21293 * 119.99767 * 19.63583 * 13 10 2 15 15 N 1.34776 * 119.99991 * 199.63964 * 13 10 2 16 16 C 1.37096 * 120.00319 * 4.15406 * 15 13 10 17 17 H 1.08003 * 119.99438 * 326.00261 * 16 15 13 18 18 C 1.38948 * 120.00288 * 146.00119 * 16 15 13 19 19 N 1.31413 * 119.99690 * 339.03857 * 18 16 15 20 20 Si 1.86798 * 120.00433 * 159.03765 * 18 16 15 21 21 H 1.48503 * 109.46932 * 89.99450 * 20 18 16 22 22 H 1.48491 * 109.47160 * 210.00269 * 20 18 16 23 23 H 1.48504 * 109.46926 * 330.00372 * 20 18 16 24 24 C 1.46504 * 119.99679 * 184.15304 * 15 13 10 25 25 C 1.52997 * 109.46816 * 87.05231 * 24 15 13 26 26 C 1.50701 * 109.46895 * 179.97438 * 25 24 15 27 27 O 1.20828 * 120.00010 * 0.02562 * 26 25 24 28 28 O 1.34227 * 120.00174 * 180.02562 * 26 25 24 29 29 H 1.08998 * 109.46963 * 305.83757 * 1 2 3 30 30 H 1.08997 * 109.46946 * 185.83356 * 1 2 3 31 31 H 1.09000 * 109.47005 * 65.83635 * 1 2 3 32 32 H 1.07999 * 119.99965 * 0.02562 * 5 4 2 33 33 H 1.07999 * 119.99658 * 180.27518 * 6 5 4 34 34 H 1.07991 * 120.00193 * 179.83345 * 7 6 5 35 35 H 1.08003 * 119.99609 * 180.02562 * 8 7 6 36 36 H 1.07995 * 120.00306 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.46888 * 65.61462 * 11 10 2 38 38 H 1.08999 * 109.46808 * 185.60621 * 11 10 2 39 39 H 1.08993 * 109.46924 * 305.61061 * 11 10 2 40 40 H 0.96700 * 113.99480 * 67.26630 * 12 10 2 41 41 H 0.97001 * 119.99791 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.47040 * 207.05553 * 24 15 13 43 43 H 1.09000 * 109.47104 * 327.05192 * 24 15 13 44 44 H 1.08997 * 109.47579 * 299.99991 * 25 24 15 45 45 H 1.09000 * 109.47316 * 60.00090 * 25 24 15 46 46 H 0.96703 * 117.00223 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.5320 -1.9555 -1.5624 6 6 1.9896 -2.6052 -2.6935 7 6 2.9541 -2.0138 -3.4877 8 6 3.4582 -0.7709 -3.1529 9 6 2.9975 -0.1193 -2.0243 10 6 2.0400 -0.7213 1.2491 11 6 1.5337 0.0026 2.4985 12 8 1.5602 -2.0673 1.2513 13 6 3.5470 -0.7251 1.2470 14 8 4.1545 0.0730 0.5650 15 7 4.2197 -1.6155 2.0028 16 6 3.5355 -2.5723 2.7071 17 1 2.5642 -2.3461 3.1218 18 6 4.0916 -3.8328 2.8873 19 7 5.0360 -4.2562 2.0775 20 14 3.4968 -4.9257 4.2806 21 1 2.3677 -5.7645 3.8043 22 1 4.6080 -5.8011 4.7320 23 1 3.0415 -4.0799 5.4132 24 6 5.6821 -1.5609 2.0717 25 6 6.1046 -0.5917 3.1775 26 6 7.6089 -0.5360 3.2488 27 8 8.2747 -1.2027 2.4924 28 8 8.2092 0.2543 4.1526 29 1 -0.3633 0.6017 0.8331 30 1 -0.3633 -1.0223 0.1044 31 1 -0.3633 0.4207 -0.9376 32 1 0.7809 -2.4191 -0.9400 33 1 1.5955 -3.5761 -2.9552 34 1 3.3136 -2.5225 -4.3699 35 1 4.2115 -0.3087 -3.7737 36 1 3.3910 0.8519 -1.7629 37 1 0.4483 -0.0808 2.5518 38 1 1.9769 -0.4502 3.3854 39 1 1.8153 1.0543 2.4481 40 1 1.9309 -2.6181 0.5482 41 1 5.4239 -5.1364 2.2031 42 1 6.0728 -2.5546 2.2906 43 1 6.0782 -1.2171 1.1162 44 1 5.7139 0.4020 2.9586 45 1 5.7085 -0.9355 4.1330 46 1 9.1762 0.2564 4.1606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593702816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:23 Heat of formation + Delta-G solvation = -162.976624 kcal Electronic energy + Delta-G solvation = -31157.146046 eV Core-core repulsion = 27011.332364 eV Total energy + Delta-G solvation = -4145.813682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65857 -41.19488 -39.78719 -37.87917 -37.19343 -36.79875 -34.47345 -33.69015 -32.42992 -31.73348 -31.51956 -29.40250 -26.99675 -26.46543 -25.39682 -23.42083 -23.11270 -22.16488 -21.22292 -20.58611 -19.49646 -19.04170 -18.06796 -17.66828 -17.56242 -17.09606 -16.62338 -16.47079 -16.23005 -16.07935 -15.72456 -15.22949 -14.90611 -14.71701 -14.39383 -14.25849 -14.04469 -13.81141 -13.69144 -13.53871 -13.31339 -13.16976 -13.01416 -12.99215 -12.70664 -12.65285 -12.57688 -12.56247 -12.39411 -12.16599 -12.06228 -11.90561 -11.73788 -11.66002 -11.56956 -10.96628 -10.81094 -10.00559 -9.71483 -9.51966 -9.29134 -8.16929 -5.86979 0.53436 0.60401 1.17340 1.45871 1.53157 1.62417 1.92667 2.10261 2.42843 2.94805 2.96815 3.17922 3.56974 3.79573 3.96270 4.01294 4.06263 4.13435 4.21553 4.27781 4.32863 4.49055 4.53542 4.57320 4.65208 4.70181 4.74835 4.82466 4.92857 4.94603 5.03958 5.11193 5.11523 5.22398 5.25715 5.39170 5.44010 5.45557 5.57760 5.66514 5.68449 5.72878 5.87700 6.05203 6.22366 6.54417 6.77450 6.98484 7.25288 7.65876 8.06208 8.83911 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009789 B = 0.005222 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.594973 B = 5360.590636 C = 6240.621507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 H 0.077 0.923 4 C -0.081 4.081 5 C -0.133 4.133 6 C -0.130 4.130 7 C -0.134 4.134 8 C -0.138 4.138 9 C -0.107 4.107 10 C 0.148 3.852 11 C -0.133 4.133 12 O -0.533 6.533 13 C 0.436 3.564 14 O -0.614 6.614 15 N -0.439 5.439 16 C -0.320 4.320 17 H 0.117 0.883 18 C -0.004 4.004 19 N -0.898 5.898 20 Si 0.971 3.029 21 H -0.277 1.277 22 H -0.293 1.293 23 H -0.258 1.258 24 C 0.125 3.875 25 C -0.115 4.115 26 C 0.494 3.506 27 O -0.550 6.550 28 O -0.507 6.507 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.371 0.629 41 H 0.264 0.736 42 H 0.099 0.901 43 H 0.028 0.972 44 H 0.102 0.898 45 H 0.116 0.884 46 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 6.357 -0.777 8.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 H 0.096 0.904 4 C -0.081 4.081 5 C -0.150 4.150 6 C -0.147 4.147 7 C -0.152 4.152 8 C -0.156 4.156 9 C -0.125 4.125 10 C 0.104 3.896 11 C -0.191 4.191 12 O -0.340 6.340 13 C 0.225 3.775 14 O -0.501 6.501 15 N -0.157 5.157 16 C -0.448 4.448 17 H 0.135 0.865 18 C -0.205 4.205 19 N -0.537 5.537 20 Si 0.796 3.204 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.182 1.182 24 C 0.001 3.999 25 C -0.153 4.153 26 C 0.337 3.663 27 O -0.441 6.441 28 O -0.320 6.320 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.221 0.779 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.047 0.953 44 H 0.120 0.880 45 H 0.134 0.866 46 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -6.400 6.603 -0.804 9.231 hybrid contribution 1.562 -0.983 -0.118 1.849 sum -4.839 5.620 -0.923 7.473 Atomic orbital electron populations 1.21763 0.91627 1.03042 1.02342 1.20576 0.97661 0.98826 0.90697 0.90436 1.19914 0.96733 0.95379 0.96076 1.21325 1.01235 0.94761 0.97727 1.21412 0.97728 1.00461 0.95139 1.21379 0.97554 0.95449 1.00789 1.21361 1.00392 0.96282 0.97591 1.21125 0.96245 1.00465 0.94681 1.21046 0.87747 0.84379 0.96437 1.21788 1.03066 0.99297 0.94908 1.86501 1.69420 1.20680 1.57392 1.21839 0.91941 0.83781 0.79956 1.90506 1.71022 1.44089 1.44490 1.43665 1.04254 1.27544 1.40250 1.19975 1.04157 0.90461 1.30162 0.86524 1.26036 0.97155 0.98279 0.99014 1.70037 1.28773 1.19223 1.35630 0.85261 0.77344 0.78269 0.79509 1.20248 1.21960 1.18196 1.20994 0.83119 1.00704 0.95116 1.21609 0.87213 1.03105 1.03414 1.23431 0.92037 0.74740 0.76088 1.90707 1.67475 1.43389 1.42535 1.84504 1.29892 1.62275 1.55379 0.90732 0.91667 0.92064 0.84579 0.84210 0.84293 0.85309 0.87303 0.89035 0.92029 0.90657 0.77937 0.92592 0.88342 0.95319 0.88031 0.86569 0.71221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.18 71.98 0.59 -2.66 16 2 C -0.06 -1.87 1.69 -11.54 -0.02 -1.89 16 3 H 0.08 2.60 7.68 -2.38 -0.02 2.58 16 4 C -0.08 -2.80 3.93 -19.87 -0.08 -2.88 16 5 C -0.13 -4.24 7.27 22.27 0.16 -4.07 16 6 C -0.13 -3.87 10.05 22.27 0.22 -3.64 16 7 C -0.13 -4.00 10.05 22.27 0.22 -3.77 16 8 C -0.14 -4.52 10.05 22.27 0.22 -4.30 16 9 C -0.11 -3.88 8.31 22.27 0.19 -3.69 16 10 C 0.15 5.33 0.39 -11.54 0.00 5.33 16 11 C -0.13 -4.06 8.08 71.98 0.58 -3.48 16 12 O -0.53 -20.04 8.45 -148.98 -1.26 -21.30 16 13 C 0.44 19.49 6.00 87.66 0.53 20.02 16 14 O -0.61 -29.95 13.74 -3.07 -0.04 -30.00 16 15 N -0.44 -20.79 2.55 -635.54 -1.62 -22.41 16 16 C -0.32 -15.05 7.19 84.04 0.60 -14.45 16 17 H 0.12 5.28 5.14 -2.91 -0.01 5.26 16 18 C 0.00 -0.18 4.98 84.93 0.42 0.24 16 19 N -0.90 -47.79 11.22 21.66 0.24 -47.54 16 20 Si 0.97 39.23 29.60 68.60 2.03 41.26 16 21 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 24 C 0.13 6.07 4.27 86.38 0.37 6.44 16 25 C -0.11 -4.46 6.12 29.85 0.18 -4.27 16 26 C 0.49 17.96 8.33 71.24 0.59 18.55 16 27 O -0.55 -24.07 16.74 21.96 0.37 -23.70 16 28 O -0.51 -13.42 13.42 -51.38 -0.69 -14.11 16 29 H 0.07 1.58 6.89 -2.39 -0.02 1.56 16 30 H 0.06 1.64 6.50 -2.39 -0.02 1.62 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.14 3.98 5.81 -2.91 -0.02 3.96 16 33 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 34 H 0.14 3.33 8.06 -2.92 -0.02 3.30 16 35 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 36 H 0.11 4.09 7.72 -2.91 -0.02 4.07 16 37 H 0.09 2.31 6.88 -2.39 -0.02 2.29 16 38 H 0.06 2.02 6.77 -2.39 -0.02 2.01 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.37 14.92 6.11 -74.06 -0.45 14.47 16 41 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 42 H 0.10 5.31 5.22 -2.39 -0.01 5.30 16 43 H 0.03 1.54 7.41 -2.39 -0.02 1.52 16 44 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 45 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 46 H 0.43 7.00 9.10 -74.05 -0.67 6.32 16 Total: -1.00 -65.42 368.22 3.72 -61.70 By element: Atomic # 1 Polarization: 54.72 SS G_CDS: -0.09 Total: 54.63 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 4.78 Total: 1.47 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.38 Total: -69.96 kcal Atomic # 8 Polarization: -87.48 SS G_CDS: -1.62 Total: -89.10 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -65.42 3.72 -61.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593702816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.278 kcal (2) G-P(sol) polarization free energy of solvation -65.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds