Wall clock time and date at job start Tue Mar 31 2020 19:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47451 * 2 1 4 4 C 1.50700 * 109.47352 * 239.99562 * 2 1 3 5 5 C 1.38233 * 120.00171 * 299.73323 * 4 2 1 6 6 C 1.38238 * 120.00060 * 179.78726 * 5 4 2 7 7 C 1.38231 * 119.99831 * 0.43806 * 6 5 4 8 8 C 1.38231 * 120.00245 * 359.81336 * 7 6 5 9 9 C 1.38238 * 120.00172 * 359.97438 * 8 7 6 10 10 C 1.53003 * 109.47235 * 119.99854 * 2 1 3 11 11 C 1.52992 * 109.47414 * 180.02562 * 10 2 1 12 12 O 1.42901 * 109.47097 * 59.99432 * 10 2 1 13 13 C 1.50700 * 109.46712 * 300.00100 * 10 2 1 14 14 O 1.21295 * 120.00515 * 340.98019 * 13 10 2 15 15 N 1.34777 * 120.00058 * 160.70631 * 13 10 2 16 16 C 1.37100 * 119.99811 * 5.10908 * 15 13 10 17 17 H 1.08008 * 119.99811 * 314.61845 * 16 15 13 18 18 C 1.38953 * 120.00000 * 134.62036 * 16 15 13 19 19 N 1.31407 * 120.00066 * 348.55080 * 18 16 15 20 20 Si 1.86795 * 119.99804 * 168.55350 * 18 16 15 21 21 H 1.48498 * 109.47423 * 60.00084 * 20 18 16 22 22 H 1.48499 * 109.47268 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47416 * 300.00025 * 20 18 16 24 24 C 1.46495 * 120.00544 * 185.11023 * 15 13 10 25 25 C 1.53002 * 109.47436 * 89.99493 * 24 15 13 26 26 C 1.50693 * 109.47253 * 180.02562 * 25 24 15 27 27 O 1.20829 * 120.00324 * 0.02562 * 26 25 24 28 28 O 1.34228 * 119.99922 * 180.02562 * 26 25 24 29 29 H 1.08998 * 109.47268 * 300.00524 * 1 2 3 30 30 H 1.09005 * 109.47247 * 60.00148 * 1 2 3 31 31 H 1.08994 * 109.47504 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99665 * 359.97438 * 5 4 2 33 33 H 1.07997 * 120.00136 * 180.26791 * 6 5 4 34 34 H 1.08003 * 119.99769 * 179.83523 * 7 6 5 35 35 H 1.08003 * 120.00642 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.00470 * 180.02562 * 9 8 7 37 37 H 1.08999 * 109.47016 * 180.02562 * 11 10 2 38 38 H 1.09008 * 109.46877 * 299.99510 * 11 10 2 39 39 H 1.08999 * 109.47854 * 59.99463 * 11 10 2 40 40 H 0.96699 * 114.00372 * 293.96577 * 12 10 2 41 41 H 0.97000 * 120.00261 * 185.05277 * 19 18 16 42 42 H 1.08999 * 109.47849 * 210.00361 * 24 15 13 43 43 H 1.09005 * 109.47160 * 330.00259 * 24 15 13 44 44 H 1.08995 * 109.47498 * 300.00728 * 25 24 15 45 45 H 1.09005 * 109.46320 * 60.00251 * 25 24 15 46 46 H 0.96708 * 117.00241 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.7030 -2.0355 -1.4463 6 6 2.1602 -2.6860 -2.5772 7 6 2.9542 -2.0140 -3.4875 8 6 3.2879 -0.6904 -3.2690 9 6 2.8271 -0.0387 -2.1404 10 6 2.0400 -0.7212 1.2493 11 6 3.5699 -0.7207 1.2496 12 8 1.5635 -2.0685 1.2494 13 6 1.5376 -0.0107 2.4797 14 8 1.1468 1.1349 2.4015 15 7 1.5174 -0.6501 3.6660 16 6 2.0500 -1.9086 3.7756 17 1 1.8266 -2.6564 3.0290 18 6 2.8774 -2.2220 4.8471 19 7 3.3315 -1.2674 5.6277 20 14 3.3440 -4.0002 5.1778 21 1 4.0592 -4.5518 3.9991 22 1 4.2288 -4.0665 6.3686 23 1 2.1156 -4.7960 5.4284 24 6 0.9262 -0.0003 4.8384 25 6 -0.5623 -0.3456 4.9166 26 6 -1.1704 0.3233 6.1222 27 8 -0.4839 1.0066 6.8446 28 8 -2.4748 0.1601 6.3936 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.0860 -2.5617 -0.7330 33 1 1.8993 -3.7200 -2.7480 34 1 3.3136 -2.5230 -4.3697 35 1 3.9079 -0.1652 -3.9805 36 1 3.0874 0.9955 -1.9698 37 1 3.9332 -1.2349 2.1394 38 1 3.9336 -1.2344 0.3596 39 1 3.9330 0.3070 1.2498 40 1 0.6042 -2.1465 1.3423 41 1 3.9668 -1.4765 6.3303 42 1 1.4284 -0.3508 5.7400 43 1 1.0445 1.0800 4.7533 44 1 -1.0645 0.0050 4.0150 45 1 -0.6805 -1.4259 5.0016 46 1 -2.8195 0.6085 7.1781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593702817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:27 Heat of formation + Delta-G solvation = -146.991239 kcal Electronic energy + Delta-G solvation = -30624.059315 eV Core-core repulsion = 26478.938811 eV Total energy + Delta-G solvation = -4145.120504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.19218 -39.78055 -38.61636 -36.43149 -35.78827 -35.10106 -33.18501 -31.95597 -30.79936 -30.56809 -29.72590 -28.99100 -25.17221 -24.51984 -23.72590 -22.38738 -22.24902 -20.73816 -19.78710 -19.01199 -17.95429 -17.69637 -16.60746 -16.31054 -15.95028 -15.65699 -15.29605 -14.95303 -14.69017 -14.41682 -14.23663 -14.18538 -13.59473 -13.27371 -13.14178 -13.09070 -12.67353 -12.45589 -12.33112 -12.10736 -11.90342 -11.84450 -11.64345 -11.37392 -11.20026 -11.18167 -11.14613 -11.09610 -11.03361 -10.68838 -10.50647 -10.44599 -10.34211 -10.16776 -10.04590 -9.44200 -9.05511 -8.67245 -8.44028 -8.20455 -7.43238 -6.32171 -4.12910 1.59306 1.65432 2.63329 3.15359 3.23648 3.24156 3.35863 3.70659 4.00975 4.15843 4.53209 4.90177 4.98842 5.02966 5.08339 5.18268 5.28388 5.43002 5.52763 5.55963 5.69692 5.74270 5.75095 5.82749 5.89087 6.03605 6.12464 6.17409 6.24053 6.28023 6.30135 6.39141 6.50448 6.51932 6.61976 6.69701 6.76226 6.78684 6.85017 6.95179 7.03736 7.25487 7.32653 7.63371 7.93563 8.10591 8.27136 8.47527 9.08491 9.39452 9.83846 10.70699 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.004237 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.560864 B = 6606.307563 C = 7972.383164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 H 0.089 0.911 4 C -0.060 4.060 5 C -0.096 4.096 6 C -0.126 4.126 7 C -0.132 4.132 8 C -0.127 4.127 9 C -0.120 4.120 10 C 0.154 3.846 11 C -0.130 4.130 12 O -0.530 6.530 13 C 0.452 3.548 14 O -0.597 6.597 15 N -0.426 5.426 16 C -0.347 4.347 17 H 0.122 0.878 18 C 0.043 3.957 19 N -0.868 5.868 20 Si 0.916 3.084 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.123 3.877 25 C -0.123 4.123 26 C 0.482 3.518 27 O -0.513 6.513 28 O -0.525 6.525 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.366 0.634 41 H 0.270 0.730 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 -2.181 -10.081 11.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 H 0.107 0.893 4 C -0.060 4.060 5 C -0.114 4.114 6 C -0.144 4.144 7 C -0.150 4.150 8 C -0.145 4.145 9 C -0.138 4.138 10 C 0.111 3.889 11 C -0.188 4.188 12 O -0.335 6.335 13 C 0.239 3.761 14 O -0.483 6.483 15 N -0.144 5.144 16 C -0.475 4.475 17 H 0.139 0.861 18 C -0.163 4.163 19 N -0.504 5.504 20 Si 0.742 3.258 21 H -0.196 1.196 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.001 4.001 25 C -0.162 4.162 26 C 0.324 3.676 27 O -0.401 6.401 28 O -0.337 6.337 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.151 0.849 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.213 0.787 41 H 0.080 0.920 42 H 0.132 0.868 43 H 0.083 0.917 44 H 0.112 0.888 45 H 0.124 0.876 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.366 -1.755 -10.083 11.127 hybrid contribution -0.339 -0.444 0.917 1.074 sum -4.705 -2.199 -9.166 10.535 Atomic orbital electron populations 1.21887 0.94276 1.01392 1.02898 1.20597 0.96437 0.99762 0.91591 0.89288 1.19808 0.96669 0.94306 0.95217 1.21300 0.99653 0.94066 0.96363 1.21143 0.98716 0.99648 0.94932 1.21047 0.99495 0.94956 0.99545 1.21024 1.00687 0.95036 0.97771 1.21084 0.98290 0.99853 0.94582 1.20922 0.95939 0.81725 0.90329 1.21640 0.91662 1.01805 1.03654 1.86626 1.26354 1.25358 1.95178 1.21200 0.81787 0.86434 0.86631 1.90539 1.53114 1.18038 1.86580 1.43396 1.49361 1.15703 1.05903 1.20239 1.28096 0.88020 1.11110 0.86135 1.25618 0.95409 0.98656 0.96632 1.69807 1.28710 1.32309 1.19592 0.86177 0.78611 0.82993 0.77971 1.19614 1.21279 1.19896 1.21205 0.87609 0.97895 0.93418 1.21851 0.99245 1.02101 0.92972 1.23792 0.79068 0.78187 0.86546 1.90712 1.61898 1.37699 1.49753 1.84587 1.27858 1.71296 1.49952 0.90629 0.92889 0.93089 0.84877 0.86612 0.86870 0.86713 0.86491 0.89548 0.92421 0.92272 0.78715 0.91992 0.86833 0.91730 0.88844 0.87648 0.74112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.40 37.15 0.31 -1.86 16 2 C -0.06 -1.04 1.68 -91.77 -0.15 -1.19 16 3 H 0.09 1.54 7.64 -51.93 -0.40 1.14 16 4 C -0.06 -0.88 3.52 -104.62 -0.37 -1.24 16 5 C -0.10 -1.34 8.31 -39.58 -0.33 -1.67 16 6 C -0.13 -1.60 10.05 -39.58 -0.40 -1.99 16 7 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 8 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 9 C -0.12 -1.64 9.67 -39.58 -0.38 -2.02 16 10 C 0.15 2.82 0.39 -91.77 -0.04 2.78 16 11 C -0.13 -2.48 8.48 37.15 0.32 -2.16 16 12 O -0.53 -8.99 6.77 -35.23 -0.24 -9.23 16 13 C 0.45 9.84 5.87 -10.98 -0.06 9.77 16 14 O -0.60 -14.22 14.17 5.54 0.08 -14.14 16 15 N -0.43 -9.69 2.47 -114.81 -0.28 -9.98 16 16 C -0.35 -8.00 7.11 -14.93 -0.11 -8.11 16 17 H 0.12 2.66 5.22 -52.48 -0.27 2.39 16 18 C 0.04 1.03 5.13 -17.47 -0.09 0.94 16 19 N -0.87 -22.61 11.43 55.50 0.63 -21.98 16 20 Si 0.92 19.21 29.57 -169.99 -5.03 14.19 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 C 0.12 2.81 4.31 -4.04 -0.02 2.79 16 25 C -0.12 -2.27 6.13 -27.89 -0.17 -2.44 16 26 C 0.48 8.55 8.33 36.00 0.30 8.85 16 27 O -0.51 -10.77 16.74 -18.75 -0.31 -11.09 16 28 O -0.53 -7.19 13.42 -39.25 -0.53 -7.72 16 29 H 0.07 1.27 6.23 -51.93 -0.32 0.95 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.66 6.18 -51.93 -0.32 0.34 16 32 H 0.13 1.80 5.63 -52.49 -0.30 1.50 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.12 1.47 7.95 -52.49 -0.42 1.05 16 37 H 0.09 1.87 6.98 -51.93 -0.36 1.51 16 38 H 0.06 1.02 7.22 -51.92 -0.37 0.64 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.37 5.33 7.41 45.56 0.34 5.67 16 41 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 42 H 0.11 2.89 5.70 -51.93 -0.30 2.60 16 43 H 0.06 1.61 7.32 -51.93 -0.38 1.23 16 44 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 45 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 46 H 0.40 3.61 9.10 45.56 0.41 4.02 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -29.95 371.02 -6.85 -36.81 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -4.78 Total: 19.04 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.98 Total: -1.49 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.35 Total: -31.96 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.00 Total: -42.18 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.95 -6.85 -36.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593702817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.184 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds