Wall clock time and date at job start Tue Mar 31 2020 19:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47451 * 2 1 4 4 C 1.50700 * 109.47352 * 239.99562 * 2 1 3 5 5 C 1.38233 * 120.00171 * 299.73323 * 4 2 1 6 6 C 1.38238 * 120.00060 * 179.78726 * 5 4 2 7 7 C 1.38231 * 119.99831 * 0.43806 * 6 5 4 8 8 C 1.38231 * 120.00245 * 359.81336 * 7 6 5 9 9 C 1.38238 * 120.00172 * 359.97438 * 8 7 6 10 10 C 1.53003 * 109.47235 * 119.99854 * 2 1 3 11 11 C 1.52992 * 109.47414 * 180.02562 * 10 2 1 12 12 O 1.42901 * 109.47097 * 59.99432 * 10 2 1 13 13 C 1.50700 * 109.46712 * 300.00100 * 10 2 1 14 14 O 1.21295 * 120.00515 * 340.98019 * 13 10 2 15 15 N 1.34777 * 120.00058 * 160.70631 * 13 10 2 16 16 C 1.37100 * 119.99811 * 5.10908 * 15 13 10 17 17 H 1.08008 * 119.99811 * 314.61845 * 16 15 13 18 18 C 1.38953 * 120.00000 * 134.62036 * 16 15 13 19 19 N 1.31407 * 120.00066 * 348.55080 * 18 16 15 20 20 Si 1.86795 * 119.99804 * 168.55350 * 18 16 15 21 21 H 1.48498 * 109.47423 * 60.00084 * 20 18 16 22 22 H 1.48499 * 109.47268 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47416 * 300.00025 * 20 18 16 24 24 C 1.46495 * 120.00544 * 185.11023 * 15 13 10 25 25 C 1.53002 * 109.47436 * 89.99493 * 24 15 13 26 26 C 1.50693 * 109.47253 * 180.02562 * 25 24 15 27 27 O 1.20829 * 120.00324 * 0.02562 * 26 25 24 28 28 O 1.34228 * 119.99922 * 180.02562 * 26 25 24 29 29 H 1.08998 * 109.47268 * 300.00524 * 1 2 3 30 30 H 1.09005 * 109.47247 * 60.00148 * 1 2 3 31 31 H 1.08994 * 109.47504 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99665 * 359.97438 * 5 4 2 33 33 H 1.07997 * 120.00136 * 180.26791 * 6 5 4 34 34 H 1.08003 * 119.99769 * 179.83523 * 7 6 5 35 35 H 1.08003 * 120.00642 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.00470 * 180.02562 * 9 8 7 37 37 H 1.08999 * 109.47016 * 180.02562 * 11 10 2 38 38 H 1.09008 * 109.46877 * 299.99510 * 11 10 2 39 39 H 1.08999 * 109.47854 * 59.99463 * 11 10 2 40 40 H 0.96699 * 114.00372 * 293.96577 * 12 10 2 41 41 H 0.97000 * 120.00261 * 185.05277 * 19 18 16 42 42 H 1.08999 * 109.47849 * 210.00361 * 24 15 13 43 43 H 1.09005 * 109.47160 * 330.00259 * 24 15 13 44 44 H 1.08995 * 109.47498 * 300.00728 * 25 24 15 45 45 H 1.09005 * 109.46320 * 60.00251 * 25 24 15 46 46 H 0.96708 * 117.00241 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.7030 -2.0355 -1.4463 6 6 2.1602 -2.6860 -2.5772 7 6 2.9542 -2.0140 -3.4875 8 6 3.2879 -0.6904 -3.2690 9 6 2.8271 -0.0387 -2.1404 10 6 2.0400 -0.7212 1.2493 11 6 3.5699 -0.7207 1.2496 12 8 1.5635 -2.0685 1.2494 13 6 1.5376 -0.0107 2.4797 14 8 1.1468 1.1349 2.4015 15 7 1.5174 -0.6501 3.6660 16 6 2.0500 -1.9086 3.7756 17 1 1.8266 -2.6564 3.0290 18 6 2.8774 -2.2220 4.8471 19 7 3.3315 -1.2674 5.6277 20 14 3.3440 -4.0002 5.1778 21 1 4.0592 -4.5518 3.9991 22 1 4.2288 -4.0665 6.3686 23 1 2.1156 -4.7960 5.4284 24 6 0.9262 -0.0003 4.8384 25 6 -0.5623 -0.3456 4.9166 26 6 -1.1704 0.3233 6.1222 27 8 -0.4839 1.0066 6.8446 28 8 -2.4748 0.1601 6.3936 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.0860 -2.5617 -0.7330 33 1 1.8993 -3.7200 -2.7480 34 1 3.3136 -2.5230 -4.3697 35 1 3.9079 -0.1652 -3.9805 36 1 3.0874 0.9955 -1.9698 37 1 3.9332 -1.2349 2.1394 38 1 3.9336 -1.2344 0.3596 39 1 3.9330 0.3070 1.2498 40 1 0.6042 -2.1465 1.3423 41 1 3.9668 -1.4765 6.3303 42 1 1.4284 -0.3508 5.7400 43 1 1.0445 1.0800 4.7533 44 1 -1.0645 0.0050 4.0150 45 1 -0.6805 -1.4259 5.0016 46 1 -2.8195 0.6085 7.1781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593702817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:26 Heat of formation + Delta-G solvation = -165.573827 kcal Electronic energy + Delta-G solvation = -30624.865116 eV Core-core repulsion = 26478.938811 eV Total energy + Delta-G solvation = -4145.926305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66735 -41.17176 -39.89889 -37.85546 -37.19143 -36.83251 -34.46183 -33.73914 -32.38079 -31.62066 -31.17058 -30.11966 -26.98189 -26.18745 -24.98753 -23.72088 -23.27606 -22.09270 -21.25435 -20.58961 -19.53625 -19.09729 -18.06374 -17.51756 -17.39988 -17.07881 -16.76690 -16.42671 -16.19125 -15.82479 -15.80245 -15.42313 -14.93705 -14.78517 -14.49032 -14.24024 -14.11165 -13.88070 -13.54271 -13.50362 -13.37561 -13.30476 -13.09855 -12.96993 -12.77529 -12.74082 -12.60036 -12.55834 -12.26719 -12.12248 -12.06081 -11.78979 -11.75864 -11.64265 -11.58892 -10.95478 -10.85317 -9.96537 -9.63957 -9.42653 -9.25727 -8.16888 -6.01503 0.59541 0.67884 1.20149 1.48635 1.52244 1.59653 1.88923 2.07506 2.43416 2.90286 3.09726 3.16545 3.44866 3.77684 3.93815 4.00669 4.14665 4.19277 4.23893 4.29720 4.35830 4.46315 4.52141 4.53858 4.67363 4.76358 4.78780 4.84150 4.89802 4.91822 5.02853 5.06905 5.21062 5.26168 5.32891 5.36267 5.41676 5.42265 5.60086 5.72935 5.76403 5.78815 5.93374 6.14954 6.28609 6.58731 6.81704 7.00773 7.24815 7.61026 8.03776 8.86204 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.004237 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.560864 B = 6606.307563 C = 7972.383164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 H 0.069 0.931 4 C -0.074 4.074 5 C -0.107 4.107 6 C -0.131 4.131 7 C -0.132 4.132 8 C -0.130 4.130 9 C -0.134 4.134 10 C 0.167 3.833 11 C -0.123 4.123 12 O -0.528 6.528 13 C 0.445 3.555 14 O -0.621 6.621 15 N -0.436 5.436 16 C -0.338 4.338 17 H 0.136 0.864 18 C -0.003 4.003 19 N -0.909 5.909 20 Si 0.975 3.025 21 H -0.267 1.267 22 H -0.298 1.298 23 H -0.261 1.261 24 C 0.128 3.872 25 C -0.113 4.113 26 C 0.493 3.507 27 O -0.553 6.553 28 O -0.507 6.507 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.378 0.622 41 H 0.264 0.736 42 H 0.086 0.914 43 H 0.031 0.969 44 H 0.105 0.895 45 H 0.121 0.879 46 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 -4.314 -12.302 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 H 0.088 0.912 4 C -0.074 4.074 5 C -0.125 4.125 6 C -0.149 4.149 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.152 4.152 10 C 0.123 3.877 11 C -0.181 4.181 12 O -0.335 6.335 13 C 0.234 3.766 14 O -0.508 6.508 15 N -0.154 5.154 16 C -0.466 4.466 17 H 0.153 0.847 18 C -0.205 4.205 19 N -0.547 5.547 20 Si 0.800 3.200 21 H -0.192 1.192 22 H -0.224 1.224 23 H -0.186 1.186 24 C 0.004 3.996 25 C -0.151 4.151 26 C 0.336 3.664 27 O -0.444 6.444 28 O -0.320 6.320 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.137 0.863 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.227 0.773 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.049 0.951 44 H 0.124 0.876 45 H 0.139 0.861 46 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -5.485 -3.906 -12.312 14.033 hybrid contribution -0.057 0.274 1.550 1.575 sum -5.542 -3.632 -10.762 12.638 Atomic orbital electron populations 1.21822 0.93305 1.02493 1.02232 1.20425 0.97253 0.98490 0.91287 0.91246 1.19672 0.97995 0.94847 0.94913 1.21387 1.00122 0.93776 0.97195 1.21439 0.98369 1.00697 0.94407 1.21421 0.98562 0.94834 1.00127 1.21328 1.00449 0.95453 0.97513 1.21247 0.98515 1.00270 0.95212 1.20731 0.95249 0.82176 0.89568 1.21544 0.92364 1.01259 1.02904 1.86580 1.27615 1.24259 1.95027 1.21902 0.80975 0.86314 0.87366 1.90519 1.53974 1.19281 1.87071 1.43591 1.49794 1.15882 1.06106 1.20566 1.27017 0.88116 1.10854 0.84721 1.26372 0.95640 1.01831 0.96638 1.69969 1.29965 1.34236 1.20541 0.85245 0.78452 0.78978 0.77279 1.19156 1.22415 1.18562 1.20929 0.90459 0.95704 0.92555 1.21604 0.96336 1.03067 0.94128 1.23483 0.79983 0.77202 0.85715 1.90712 1.63195 1.39469 1.50980 1.84502 1.25274 1.71005 1.51248 0.93064 0.91671 0.91076 0.84698 0.84538 0.84192 0.84454 0.86303 0.92387 0.90774 0.92836 0.77271 0.92625 0.89588 0.95053 0.87648 0.86124 0.71240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 8.40 71.98 0.60 -3.43 16 2 C -0.06 -1.75 1.68 -11.54 -0.02 -1.77 16 3 H 0.07 2.45 7.64 -2.39 -0.02 2.43 16 4 C -0.07 -2.06 3.52 -19.86 -0.07 -2.13 16 5 C -0.11 -2.73 8.31 22.27 0.18 -2.54 16 6 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 7 C -0.13 -2.68 10.05 22.27 0.22 -2.45 16 8 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 9 C -0.13 -3.46 9.67 22.27 0.22 -3.24 16 10 C 0.17 6.05 0.39 -11.54 0.00 6.04 16 11 C -0.12 -4.72 8.48 71.98 0.61 -4.11 16 12 O -0.53 -17.10 6.77 -148.98 -1.01 -18.11 16 13 C 0.45 19.79 5.87 87.66 0.51 20.30 16 14 O -0.62 -30.57 14.17 -3.08 -0.04 -30.61 16 15 N -0.44 -20.25 2.47 -635.52 -1.57 -21.82 16 16 C -0.34 -15.59 7.11 84.04 0.60 -14.99 16 17 H 0.14 5.76 5.22 -2.91 -0.02 5.75 16 18 C 0.00 -0.16 5.13 84.93 0.44 0.27 16 19 N -0.91 -49.10 11.43 21.66 0.25 -48.85 16 20 Si 0.98 39.30 29.57 68.60 2.03 41.33 16 21 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 22 H -0.30 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 24 C 0.13 6.07 4.31 86.38 0.37 6.44 16 25 C -0.11 -4.14 6.13 29.85 0.18 -3.96 16 26 C 0.49 17.25 8.33 71.23 0.59 17.84 16 27 O -0.55 -23.68 16.74 21.96 0.37 -23.31 16 28 O -0.51 -12.77 13.42 -51.40 -0.69 -13.46 16 29 H 0.05 1.71 6.23 -2.39 -0.01 1.70 16 30 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 1.70 6.18 -2.39 -0.01 1.69 16 32 H 0.14 3.29 5.63 -2.91 -0.02 3.28 16 33 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.12 2.90 7.95 -2.91 -0.02 2.88 16 37 H 0.06 2.54 6.98 -2.39 -0.02 2.52 16 38 H 0.07 2.56 7.22 -2.38 -0.02 2.54 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.38 10.25 7.41 -74.06 -0.55 9.70 16 41 H 0.26 13.90 8.32 -92.71 -0.77 13.12 16 42 H 0.09 4.60 5.70 -2.39 -0.01 4.58 16 43 H 0.03 1.65 7.32 -2.38 -0.02 1.63 16 44 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 45 H 0.12 4.07 8.14 -2.38 -0.02 4.05 16 46 H 0.43 6.58 9.10 -74.05 -0.67 5.91 16 Total: -1.00 -66.80 371.02 4.03 -62.77 By element: Atomic # 1 Polarization: 45.23 SS G_CDS: -0.19 Total: 45.04 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 4.89 Total: 7.03 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -1.32 Total: -70.66 kcal Atomic # 8 Polarization: -84.12 SS G_CDS: -1.37 Total: -85.50 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -66.80 4.03 -62.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593702817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.807 kcal (2) G-P(sol) polarization free energy of solvation -66.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds