Wall clock time and date at job start Tue Mar 31 2020 19:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 115.56062 * 2 1 4 4 C 1.52999 * 117.49854 * 145.68694 * 2 1 3 5 5 C 1.52997 * 117.49887 * 214.31340 * 2 1 3 6 6 H 1.09000 * 117.51635 * 359.97438 * 5 2 1 7 7 C 1.50702 * 117.50263 * 145.01919 * 5 2 1 8 8 C 1.34513 * 125.79049 * 240.01309 * 7 5 2 9 9 C 1.41387 * 106.83715 * 180.02562 * 8 7 5 10 10 C 1.34511 * 106.84306 * 359.97438 * 9 8 7 11 11 C 1.50700 * 125.78695 * 180.02562 * 10 9 8 12 12 C 1.52994 * 109.47271 * 90.00304 * 11 10 9 13 13 C 1.50700 * 109.47271 * 180.02562 * 12 11 10 14 14 O 1.21289 * 119.99678 * 354.49184 * 13 12 11 15 15 N 1.34776 * 120.00002 * 174.49461 * 13 12 11 16 16 C 1.37100 * 119.99978 * 355.12451 * 15 13 12 17 17 H 1.07992 * 120.00158 * 32.04812 * 16 15 13 18 18 C 1.38956 * 119.99551 * 211.78054 * 16 15 13 19 19 N 1.31418 * 119.99456 * 208.24849 * 18 16 15 20 20 Si 1.86796 * 120.00564 * 28.24484 * 18 16 15 21 21 H 1.48506 * 109.46808 * 359.13054 * 20 18 16 22 22 H 1.48499 * 109.46989 * 119.12210 * 20 18 16 23 23 H 1.48495 * 109.47830 * 239.12702 * 20 18 16 24 24 C 1.46501 * 119.99714 * 175.12644 * 15 13 12 25 25 C 1.53003 * 109.46855 * 269.99490 * 24 15 13 26 26 C 1.50707 * 109.46884 * 180.02562 * 25 24 15 27 27 O 1.20822 * 119.99528 * 0.02562 * 26 25 24 28 28 O 1.34227 * 119.99869 * 180.02562 * 26 25 24 29 29 O 1.34304 * 108.42155 * 0.26256 * 10 9 8 30 30 H 1.08999 * 109.47432 * 205.68922 * 1 2 3 31 31 H 1.09000 * 109.47196 * 325.68920 * 1 2 3 32 32 H 1.08998 * 109.47210 * 85.68876 * 1 2 3 33 33 H 1.08996 * 117.50002 * 359.97438 * 4 2 1 34 34 H 1.09000 * 117.49834 * 214.97431 * 4 2 1 35 35 H 1.07991 * 126.57826 * 0.05536 * 8 7 5 36 36 H 1.08000 * 126.57284 * 179.97438 * 9 8 7 37 37 H 1.08994 * 109.46894 * 329.99942 * 11 10 9 38 38 H 1.08999 * 109.46506 * 210.00108 * 11 10 9 39 39 H 1.09004 * 109.47260 * 59.99473 * 12 11 10 40 40 H 1.09008 * 109.46671 * 299.99663 * 12 11 10 41 41 H 0.96999 * 120.00020 * 359.97438 * 19 18 16 42 42 H 1.08996 * 109.47213 * 30.00133 * 24 15 13 43 43 H 1.09000 * 109.46841 * 149.99841 * 24 15 13 44 44 H 1.08996 * 109.47213 * 300.00264 * 25 24 15 45 45 H 1.08994 * 109.46679 * 60.00408 * 25 24 15 46 46 H 0.96701 * 116.99832 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2364 -1.1209 -0.7650 6 1 1.6115 -1.8588 -1.2681 7 6 3.5293 -0.7811 -1.4609 8 6 3.7638 -0.8883 -2.7811 9 6 5.0965 -0.4676 -2.9957 10 6 5.5963 -0.1279 -1.7940 11 6 6.9900 0.3818 -1.5313 12 6 7.0026 1.9082 -1.6341 13 6 8.3964 2.4179 -1.3721 14 8 9.2690 1.6483 -1.0294 15 7 8.6732 3.7287 -1.5184 16 6 7.7148 4.5820 -2.0012 17 1 6.6719 4.3975 -1.7904 18 6 8.0859 5.6872 -2.7573 19 7 7.3340 6.7650 -2.7583 20 14 9.6536 5.6412 -3.7720 21 1 10.3266 4.3308 -3.5838 22 1 9.3197 5.8245 -5.2073 23 1 10.5607 6.7313 -3.3316 24 6 9.9982 4.2418 -1.1615 25 6 10.0013 4.6674 0.3082 26 6 11.3642 5.1959 0.6751 27 8 12.2425 5.2291 -0.1539 28 8 11.6021 5.6296 1.9229 29 8 4.6444 -0.3250 -0.8673 30 1 -0.3634 -0.9261 0.4455 31 1 -0.3633 0.8488 0.5793 32 1 -0.3633 0.0773 -1.0247 33 1 1.6112 -1.8582 1.2687 34 1 3.1716 -0.8751 1.2682 35 1 3.0677 -1.2297 -3.5328 36 1 5.6138 -0.4268 -3.9429 37 1 7.6750 -0.0377 -2.2680 38 1 7.3037 0.0823 -0.5313 39 1 6.3174 2.3277 -0.8975 40 1 6.6887 2.2076 -2.6342 41 1 6.5197 6.7888 -2.2317 42 1 10.7435 3.4616 -1.3155 43 1 10.2363 5.1007 -1.7890 44 1 9.2559 5.4477 0.4621 45 1 9.7632 3.8086 0.9356 46 1 12.4916 5.9592 2.1110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594278000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:26 Heat of formation + Delta-G solvation = -95.318547 kcal Electronic energy + Delta-G solvation = -28416.301991 eV Core-core repulsion = 24273.422184 eV Total energy + Delta-G solvation = -4142.879808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.48715 -40.03951 -38.92352 -37.90948 -36.01912 -35.30942 -33.60516 -32.67659 -32.31188 -30.90880 -29.56797 -27.87915 -25.42210 -24.68225 -23.52255 -21.96392 -21.59962 -20.93246 -20.73315 -19.75300 -19.07939 -17.99092 -17.29912 -16.99271 -16.38015 -16.27999 -15.85082 -15.57716 -15.11830 -14.87661 -14.69776 -14.45826 -14.10285 -13.71485 -13.30419 -13.24219 -13.06821 -12.80860 -12.69833 -12.63110 -12.40804 -12.14348 -12.03757 -11.84567 -11.79470 -11.69163 -11.47950 -11.32532 -11.13468 -10.73429 -10.57558 -10.44117 -10.32956 -10.28376 -9.98243 -9.67633 -9.63788 -9.24084 -8.76912 -8.04545 -8.00901 -6.96586 -4.16728 1.77480 2.48511 2.70938 2.94803 3.19948 3.21459 3.30104 3.45457 3.64524 3.66764 4.14236 4.26814 4.38152 4.57533 4.62525 4.83885 4.97932 5.06078 5.19003 5.21373 5.32830 5.39781 5.45882 5.49440 5.52186 5.55806 5.57038 5.74256 5.76932 5.80052 5.86625 5.98917 6.01545 6.05062 6.07671 6.16159 6.28086 6.28989 6.39307 6.50238 6.54839 6.69964 6.71368 7.35273 7.44296 7.77760 8.12530 8.22274 8.89321 9.13245 9.61636 10.41574 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.002668 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.960193 B =10491.778998 C =10989.359169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 H 0.108 0.892 4 C -0.167 4.167 5 C -0.076 4.076 6 H 0.131 0.869 7 C 0.005 3.995 8 C -0.200 4.200 9 C -0.213 4.213 10 C 0.006 3.994 11 C -0.024 4.024 12 C -0.113 4.113 13 C 0.473 3.527 14 O -0.602 6.602 15 N -0.455 5.455 16 C -0.439 4.439 17 H 0.094 0.906 18 C 0.033 3.967 19 N -0.856 5.856 20 Si 1.037 2.963 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.279 1.279 24 C 0.128 3.872 25 C -0.125 4.125 26 C 0.485 3.515 27 O -0.518 6.518 28 O -0.520 6.520 29 O -0.173 6.173 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.278 0.722 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.172 -10.448 5.467 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 H 0.126 0.874 4 C -0.204 4.204 5 C -0.094 4.094 6 H 0.149 0.851 7 C -0.045 4.045 8 C -0.219 4.219 9 C -0.232 4.232 10 C -0.044 4.044 11 C -0.062 4.062 12 C -0.153 4.153 13 C 0.263 3.737 14 O -0.488 6.488 15 N -0.175 5.175 16 C -0.565 4.565 17 H 0.111 0.889 18 C -0.179 4.179 19 N -0.487 5.487 20 Si 0.865 3.135 21 H -0.198 1.198 22 H -0.213 1.213 23 H -0.205 1.205 24 C 0.004 3.996 25 C -0.164 4.164 26 C 0.327 3.673 27 O -0.406 6.406 28 O -0.332 6.332 29 O -0.070 6.070 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.131 0.869 45 H 0.123 0.877 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -6.975 -9.963 4.595 13.001 hybrid contribution -0.548 -0.397 0.840 1.079 sum -7.523 -10.360 5.436 13.909 Atomic orbital electron populations 1.21379 0.92224 1.02156 1.02163 1.22526 0.95406 0.94994 1.03083 0.87358 1.23181 1.03159 1.01364 0.92701 1.20520 0.92048 1.02881 0.93978 0.85133 1.21246 0.87305 1.04281 0.91686 1.21419 0.97452 1.07862 0.95203 1.21562 0.95637 1.07539 0.98503 1.22652 0.91710 1.03038 0.87003 1.19947 0.86279 0.95316 1.04656 1.21332 0.96168 0.93237 1.04530 1.20312 0.90025 0.82000 0.81322 1.90553 1.48763 1.55987 1.53468 1.43712 1.11549 1.05991 1.56200 1.20412 0.89835 1.09108 1.37156 0.88882 1.26262 1.04683 0.91000 0.95929 1.70817 1.14313 1.24290 1.39297 0.84128 0.75353 0.77120 0.76942 1.19832 1.21265 1.20494 1.21265 0.87473 0.99371 0.91458 1.21797 0.90949 1.03416 1.00227 1.23672 0.91249 0.73421 0.78938 1.90698 1.47276 1.52315 1.50329 1.84577 1.39839 1.75540 1.33224 1.83921 1.19684 1.65586 1.37787 0.92401 0.91754 0.91928 0.88078 0.88095 0.83828 0.83443 0.88403 0.89780 0.89966 0.88786 0.91075 0.89821 0.91427 0.86902 0.87673 0.73806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.19 37.16 0.38 -0.52 16 2 C -0.14 -1.38 6.11 -90.62 -0.55 -1.93 16 3 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 4 C -0.17 -1.59 9.81 -26.73 -0.26 -1.85 16 5 C -0.08 -0.79 5.96 -91.77 -0.55 -1.34 16 6 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 7 C 0.00 0.06 6.80 -35.62 -0.24 -0.18 16 8 C -0.20 -2.69 10.81 -39.70 -0.43 -3.12 16 9 C -0.21 -3.12 10.81 -39.70 -0.43 -3.55 16 10 C 0.01 0.10 6.57 -35.63 -0.23 -0.14 16 11 C -0.02 -0.40 5.05 -27.89 -0.14 -0.54 16 12 C -0.11 -2.11 4.23 -27.89 -0.12 -2.23 16 13 C 0.47 10.43 7.62 -10.99 -0.08 10.35 16 14 O -0.60 -14.20 15.54 5.55 0.09 -14.11 16 15 N -0.45 -10.48 2.26 -114.81 -0.26 -10.74 16 16 C -0.44 -10.75 8.92 -14.93 -0.13 -10.89 16 17 H 0.09 2.34 7.21 -52.49 -0.38 1.96 16 18 C 0.03 0.84 5.23 -17.46 -0.09 0.74 16 19 N -0.86 -22.93 13.69 55.50 0.76 -22.17 16 20 Si 1.04 24.04 25.61 -169.99 -4.35 19.69 16 21 H -0.27 -6.25 6.33 56.52 0.36 -5.89 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.13 2.82 3.17 -4.04 -0.01 2.80 16 25 C -0.13 -2.32 6.14 -27.88 -0.17 -2.49 16 26 C 0.48 8.39 8.33 36.01 0.30 8.69 16 27 O -0.52 -10.35 16.74 -18.75 -0.31 -10.66 16 28 O -0.52 -7.01 13.42 -39.25 -0.53 -7.53 16 29 O -0.17 -2.73 10.36 5.69 0.06 -2.67 16 30 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 34 H 0.10 1.08 7.96 -51.93 -0.41 0.67 16 35 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 39 H 0.08 1.52 8.02 -51.93 -0.42 1.10 16 40 H 0.09 1.78 7.86 -51.92 -0.41 1.37 16 41 H 0.28 7.29 8.73 -40.82 -0.36 6.93 16 42 H 0.08 1.89 7.32 -51.93 -0.38 1.51 16 43 H 0.07 1.55 3.28 -51.93 -0.17 1.38 16 44 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 45 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 46 H 0.40 3.46 9.10 45.56 0.41 3.87 16 LS Contribution 390.49 15.07 5.88 5.88 Total: -1.00 -30.65 390.49 -7.43 -38.08 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.00 Total: 10.42 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.77 Total: -6.18 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.50 Total: -32.91 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.70 Total: -34.98 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -4.35 Total: 19.69 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.65 -7.43 -38.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594278000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.240 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds