Wall clock time and date at job start Tue Mar 31 2020 19:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 115.56062 * 2 1 4 4 C 1.52999 * 117.49854 * 145.68694 * 2 1 3 5 5 C 1.52997 * 117.49887 * 214.31340 * 2 1 3 6 6 H 1.09000 * 117.51635 * 359.97438 * 5 2 1 7 7 C 1.50702 * 117.50263 * 145.01919 * 5 2 1 8 8 C 1.34513 * 125.79049 * 240.01309 * 7 5 2 9 9 C 1.41387 * 106.83715 * 180.02562 * 8 7 5 10 10 C 1.34511 * 106.84306 * 359.97438 * 9 8 7 11 11 C 1.50700 * 125.78695 * 180.02562 * 10 9 8 12 12 C 1.52994 * 109.47271 * 90.00304 * 11 10 9 13 13 C 1.50700 * 109.47271 * 180.02562 * 12 11 10 14 14 O 1.21289 * 119.99678 * 354.49184 * 13 12 11 15 15 N 1.34776 * 120.00002 * 174.49461 * 13 12 11 16 16 C 1.37100 * 119.99978 * 355.12451 * 15 13 12 17 17 H 1.07992 * 120.00158 * 32.04812 * 16 15 13 18 18 C 1.38956 * 119.99551 * 211.78054 * 16 15 13 19 19 N 1.31418 * 119.99456 * 208.24849 * 18 16 15 20 20 Si 1.86796 * 120.00564 * 28.24484 * 18 16 15 21 21 H 1.48506 * 109.46808 * 359.13054 * 20 18 16 22 22 H 1.48499 * 109.46989 * 119.12210 * 20 18 16 23 23 H 1.48495 * 109.47830 * 239.12702 * 20 18 16 24 24 C 1.46501 * 119.99714 * 175.12644 * 15 13 12 25 25 C 1.53003 * 109.46855 * 269.99490 * 24 15 13 26 26 C 1.50707 * 109.46884 * 180.02562 * 25 24 15 27 27 O 1.20822 * 119.99528 * 0.02562 * 26 25 24 28 28 O 1.34227 * 119.99869 * 180.02562 * 26 25 24 29 29 O 1.34304 * 108.42155 * 0.26256 * 10 9 8 30 30 H 1.08999 * 109.47432 * 205.68922 * 1 2 3 31 31 H 1.09000 * 109.47196 * 325.68920 * 1 2 3 32 32 H 1.08998 * 109.47210 * 85.68876 * 1 2 3 33 33 H 1.08996 * 117.50002 * 359.97438 * 4 2 1 34 34 H 1.09000 * 117.49834 * 214.97431 * 4 2 1 35 35 H 1.07991 * 126.57826 * 0.05536 * 8 7 5 36 36 H 1.08000 * 126.57284 * 179.97438 * 9 8 7 37 37 H 1.08994 * 109.46894 * 329.99942 * 11 10 9 38 38 H 1.08999 * 109.46506 * 210.00108 * 11 10 9 39 39 H 1.09004 * 109.47260 * 59.99473 * 12 11 10 40 40 H 1.09008 * 109.46671 * 299.99663 * 12 11 10 41 41 H 0.96999 * 120.00020 * 359.97438 * 19 18 16 42 42 H 1.08996 * 109.47213 * 30.00133 * 24 15 13 43 43 H 1.09000 * 109.46841 * 149.99841 * 24 15 13 44 44 H 1.08996 * 109.47213 * 300.00264 * 25 24 15 45 45 H 1.08994 * 109.46679 * 60.00408 * 25 24 15 46 46 H 0.96701 * 116.99832 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2364 -1.1209 -0.7650 6 1 1.6115 -1.8588 -1.2681 7 6 3.5293 -0.7811 -1.4609 8 6 3.7638 -0.8883 -2.7811 9 6 5.0965 -0.4676 -2.9957 10 6 5.5963 -0.1279 -1.7940 11 6 6.9900 0.3818 -1.5313 12 6 7.0026 1.9082 -1.6341 13 6 8.3964 2.4179 -1.3721 14 8 9.2690 1.6483 -1.0294 15 7 8.6732 3.7287 -1.5184 16 6 7.7148 4.5820 -2.0012 17 1 6.6719 4.3975 -1.7904 18 6 8.0859 5.6872 -2.7573 19 7 7.3340 6.7650 -2.7583 20 14 9.6536 5.6412 -3.7720 21 1 10.3266 4.3308 -3.5838 22 1 9.3197 5.8245 -5.2073 23 1 10.5607 6.7313 -3.3316 24 6 9.9982 4.2418 -1.1615 25 6 10.0013 4.6674 0.3082 26 6 11.3642 5.1959 0.6751 27 8 12.2425 5.2291 -0.1539 28 8 11.6021 5.6296 1.9229 29 8 4.6444 -0.3250 -0.8673 30 1 -0.3634 -0.9261 0.4455 31 1 -0.3633 0.8488 0.5793 32 1 -0.3633 0.0773 -1.0247 33 1 1.6112 -1.8582 1.2687 34 1 3.1716 -0.8751 1.2682 35 1 3.0677 -1.2297 -3.5328 36 1 5.6138 -0.4268 -3.9429 37 1 7.6750 -0.0377 -2.2680 38 1 7.3037 0.0823 -0.5313 39 1 6.3174 2.3277 -0.8975 40 1 6.6887 2.2076 -2.6342 41 1 6.5197 6.7888 -2.2317 42 1 10.7435 3.4616 -1.3155 43 1 10.2363 5.1007 -1.7890 44 1 9.2559 5.4477 0.4621 45 1 9.7632 3.8086 0.9356 46 1 12.4916 5.9592 2.1110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594278000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:25 Heat of formation + Delta-G solvation = -112.150851 kcal Electronic energy + Delta-G solvation = -28417.031895 eV Core-core repulsion = 24273.422184 eV Total energy + Delta-G solvation = -4143.609711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.60461 -41.47362 -40.64599 -38.69059 -37.42811 -36.99038 -35.03055 -34.23753 -33.78413 -32.53599 -30.52431 -28.86012 -26.82905 -26.57022 -24.90966 -22.99515 -22.71850 -22.21656 -21.63993 -20.96259 -20.81547 -19.48163 -18.92436 -18.30995 -17.90787 -17.63661 -17.09025 -16.97995 -16.62071 -16.50752 -15.90415 -15.85689 -15.34027 -14.87975 -14.69014 -14.50735 -14.49168 -14.08354 -13.95052 -13.90216 -13.74899 -13.50383 -13.24701 -13.09732 -13.02052 -12.89322 -12.77311 -12.61797 -12.38149 -12.22346 -12.03418 -11.88607 -11.77796 -11.54894 -11.47842 -11.11345 -11.03011 -10.77858 -10.57703 -9.97658 -9.11325 -8.96850 -6.15614 0.66420 1.10435 1.34827 1.40942 1.60550 1.61110 1.74773 1.85896 1.99912 2.24467 2.70905 2.86539 2.94949 3.44401 3.72502 3.77241 3.82327 3.87978 3.89109 4.06858 4.08529 4.17502 4.29090 4.30187 4.37034 4.39409 4.52680 4.58219 4.67757 4.69303 4.80868 4.85561 4.87605 4.91292 4.94535 5.01688 5.08181 5.14283 5.18700 5.22828 5.39278 5.51316 5.58401 5.61840 5.77608 6.22881 6.23984 6.93011 6.95790 7.26700 7.74556 8.41423 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.002668 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.960193 B =10491.778998 C =10989.359169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.143 4.143 3 H 0.085 0.915 4 C -0.163 4.163 5 C -0.084 4.084 6 H 0.158 0.842 7 C 0.000 4.000 8 C -0.209 4.209 9 C -0.212 4.212 10 C -0.021 4.021 11 C -0.012 4.012 12 C -0.103 4.103 13 C 0.472 3.528 14 O -0.615 6.615 15 N -0.466 5.466 16 C -0.425 4.425 17 H 0.083 0.917 18 C 0.005 3.995 19 N -0.882 5.882 20 Si 1.064 2.936 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.277 1.277 24 C 0.124 3.876 25 C -0.120 4.120 26 C 0.496 3.504 27 O -0.548 6.548 28 O -0.505 6.505 29 O -0.191 6.191 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.274 0.726 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.188 -11.594 5.901 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.161 4.161 3 H 0.103 0.897 4 C -0.200 4.200 5 C -0.102 4.102 6 H 0.176 0.824 7 C -0.049 4.049 8 C -0.228 4.228 9 C -0.231 4.231 10 C -0.071 4.071 11 C -0.050 4.050 12 C -0.143 4.143 13 C 0.263 3.737 14 O -0.502 6.502 15 N -0.186 5.186 16 C -0.552 4.552 17 H 0.101 0.899 18 C -0.203 4.203 19 N -0.515 5.515 20 Si 0.889 3.111 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.204 1.204 24 C 0.000 4.000 25 C -0.159 4.159 26 C 0.340 3.660 27 O -0.439 6.439 28 O -0.319 6.319 29 O -0.089 6.089 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.146 0.854 34 H 0.100 0.900 35 H 0.188 0.812 36 H 0.178 0.822 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -7.979 -11.103 5.057 14.578 hybrid contribution -0.245 -0.096 0.806 0.848 sum -8.225 -11.199 5.864 15.081 Atomic orbital electron populations 1.21383 0.90098 1.03217 1.02768 1.22545 0.96914 0.93797 1.02833 0.89708 1.23241 1.02771 1.01824 0.92182 1.20801 0.90928 1.03890 0.94556 0.82445 1.21996 0.87597 1.03004 0.92353 1.21768 0.97380 1.07888 0.95771 1.21872 0.96341 1.06367 0.98540 1.22507 0.91716 1.05207 0.87639 1.19742 0.87295 0.93489 1.04430 1.21267 0.93919 0.94920 1.04190 1.20839 0.91052 0.81550 0.80238 1.90539 1.49633 1.56212 1.53842 1.43812 1.11697 1.06290 1.56771 1.20291 0.89736 1.08743 1.36459 0.89891 1.26874 1.05917 0.90995 0.96485 1.70870 1.14897 1.25134 1.40614 0.83745 0.73706 0.77072 0.76583 1.19834 1.20507 1.20363 1.21243 0.86611 0.98576 0.93572 1.21601 0.92208 1.03920 0.98165 1.23223 0.90206 0.72961 0.79637 1.90698 1.47952 1.53724 1.51494 1.84497 1.41932 1.74755 1.30721 1.83901 1.20438 1.66135 1.38411 0.90695 0.91491 0.91414 0.85426 0.89978 0.81201 0.82190 0.88079 0.90357 0.90001 0.89016 0.91597 0.90807 0.92486 0.86791 0.86753 0.70851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 10.19 71.98 0.73 -0.72 16 2 C -0.14 -2.58 6.11 -10.79 -0.07 -2.64 16 3 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 4 C -0.16 -2.85 9.81 30.60 0.30 -2.54 16 5 C -0.08 -1.59 5.96 -11.54 -0.07 -1.66 16 6 H 0.16 2.09 8.14 -2.39 -0.02 2.07 16 7 C 0.00 0.00 6.80 24.83 0.17 0.17 16 8 C -0.21 -5.30 10.81 22.19 0.24 -5.06 16 9 C -0.21 -6.02 10.81 22.19 0.24 -5.78 16 10 C -0.02 -0.67 6.57 24.83 0.16 -0.51 16 11 C -0.01 -0.39 5.05 29.85 0.15 -0.24 16 12 C -0.10 -3.88 4.23 29.85 0.13 -3.75 16 13 C 0.47 20.85 7.62 87.66 0.67 21.52 16 14 O -0.62 -28.99 15.54 -3.06 -0.05 -29.04 16 15 N -0.47 -21.50 2.26 -635.54 -1.44 -22.93 16 16 C -0.43 -20.98 8.92 84.04 0.75 -20.23 16 17 H 0.08 4.23 7.21 -2.91 -0.02 4.21 16 18 C 0.00 0.24 5.23 84.93 0.44 0.69 16 19 N -0.88 -47.60 13.69 21.67 0.30 -47.31 16 20 Si 1.06 48.67 25.61 68.60 1.76 50.42 16 21 H -0.27 -12.37 6.33 99.48 0.63 -11.74 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 C 0.12 5.42 3.17 86.38 0.27 5.70 16 25 C -0.12 -4.38 6.14 29.85 0.18 -4.20 16 26 C 0.50 16.52 8.33 71.24 0.59 17.12 16 27 O -0.55 -21.41 16.74 21.98 0.37 -21.04 16 28 O -0.51 -12.36 13.42 -51.39 -0.69 -13.05 16 29 O -0.19 -6.06 10.36 -2.54 -0.03 -6.09 16 30 H 0.07 0.68 7.90 -2.39 -0.02 0.66 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.13 1.52 8.05 -2.39 -0.02 1.50 16 34 H 0.08 1.75 7.96 -2.39 -0.02 1.73 16 35 H 0.17 3.26 8.06 -2.92 -0.02 3.24 16 36 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.08 2.64 8.04 -2.39 -0.02 2.62 16 39 H 0.08 3.08 8.02 -2.38 -0.02 3.06 16 40 H 0.09 3.49 7.86 -2.38 -0.02 3.47 16 41 H 0.27 14.54 8.73 -92.71 -0.81 13.74 16 42 H 0.07 3.36 7.32 -2.39 -0.02 3.34 16 43 H 0.06 2.62 3.28 -2.39 -0.01 2.61 16 44 H 0.11 4.13 8.14 -2.39 -0.02 4.12 16 45 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 46 H 0.43 6.08 9.10 -74.06 -0.67 5.41 16 Total: -1.00 -65.46 390.49 5.34 -60.12 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.22 Total: 31.07 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 4.90 Total: -2.15 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -1.14 Total: -70.24 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: -0.40 Total: -69.22 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 1.76 Total: 50.42 kcal Total: -65.46 5.34 -60.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594278000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.034 kcal (2) G-P(sol) polarization free energy of solvation -65.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds