Wall clock time and date at job start Tue Mar 31 2020 19:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 115.55790 * 2 1 4 4 C 1.53004 * 117.49661 * 214.31218 * 2 1 3 5 5 C 1.53000 * 117.49839 * 145.68864 * 2 1 3 6 6 H 1.09002 * 117.52036 * 0.02562 * 5 2 1 7 7 C 1.50697 * 117.49886 * 214.97600 * 5 2 1 8 8 C 1.34517 * 125.78513 * 119.99058 * 7 5 2 9 9 C 1.41385 * 106.83724 * 180.02562 * 8 7 5 10 10 C 1.34514 * 106.84404 * 359.97438 * 9 8 7 11 11 C 1.50699 * 125.79258 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.46934 * 90.00199 * 11 10 9 13 13 C 1.50705 * 109.47218 * 179.97438 * 12 11 10 14 14 O 1.21296 * 119.99459 * 4.63947 * 13 12 11 15 15 N 1.34775 * 120.00327 * 184.64022 * 13 12 11 16 16 C 1.37102 * 119.99813 * 355.41371 * 15 13 12 17 17 H 1.08003 * 119.99885 * 34.31035 * 16 15 13 18 18 C 1.38949 * 120.00252 * 214.30603 * 16 15 13 19 19 N 1.31411 * 119.99990 * 28.60811 * 18 16 15 20 20 Si 1.86797 * 120.00051 * 208.33746 * 18 16 15 21 21 H 1.48497 * 109.47089 * 270.27253 * 20 18 16 22 22 H 1.48502 * 109.47041 * 30.27139 * 20 18 16 23 23 H 1.48497 * 109.47290 * 150.27190 * 20 18 16 24 24 C 1.46493 * 120.00096 * 175.42112 * 15 13 12 25 25 C 1.53002 * 109.47148 * 269.99802 * 24 15 13 26 26 C 1.50696 * 109.47481 * 180.02562 * 25 24 15 27 27 O 1.20830 * 119.99954 * 359.97438 * 26 25 24 28 28 O 1.34221 * 120.00285 * 180.02562 * 26 25 24 29 29 O 1.34306 * 108.41989 * 0.26456 * 10 9 8 30 30 H 1.09000 * 109.47123 * 274.30820 * 1 2 3 31 31 H 1.08997 * 109.47397 * 34.31113 * 1 2 3 32 32 H 1.09004 * 109.47024 * 154.31512 * 1 2 3 33 33 H 1.08993 * 117.49368 * 145.01996 * 4 2 1 34 34 H 1.08992 * 117.51565 * 359.97438 * 4 2 1 35 35 H 1.07997 * 126.58407 * 0.05480 * 8 7 5 36 36 H 1.08001 * 126.58001 * 180.02562 * 9 8 7 37 37 H 1.08996 * 109.47217 * 330.00240 * 11 10 9 38 38 H 1.09002 * 109.47231 * 210.00019 * 11 10 9 39 39 H 1.08998 * 109.47616 * 60.00191 * 12 11 10 40 40 H 1.09003 * 109.47517 * 299.99792 * 12 11 10 41 41 H 0.97002 * 119.99685 * 4.43926 * 19 18 16 42 42 H 1.08996 * 109.47510 * 29.99551 * 24 15 13 43 43 H 1.09005 * 109.47641 * 149.99608 * 24 15 13 44 44 H 1.09000 * 109.46756 * 299.99728 * 25 24 15 45 45 H 1.08997 * 109.47282 * 59.99510 * 25 24 15 46 46 H 0.96699 * 117.00443 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7651 5 6 2.2365 -1.1210 0.7650 6 1 1.6116 -1.8589 1.2681 7 6 3.5293 -0.7811 1.4608 8 6 3.7639 -0.8884 2.7810 9 6 5.0961 -0.4665 2.9958 10 6 5.5961 -0.1272 1.7940 11 6 6.9894 0.3834 1.5314 12 6 7.9210 -0.7976 1.2517 13 6 9.3143 -0.2870 0.9884 14 8 9.5586 0.8955 1.1037 15 7 10.2887 -1.1442 0.6248 16 6 10.0371 -2.4914 0.5856 17 1 9.0608 -2.8501 0.2945 18 6 11.0380 -3.3952 0.9203 19 7 11.9780 -3.0493 1.7709 20 14 11.0431 -5.1044 0.1667 21 1 10.2585 -6.0267 1.0264 22 1 10.4341 -5.0506 -1.1865 23 1 12.4408 -5.5947 0.0614 24 6 11.6167 -0.6365 0.2716 25 6 11.6679 -0.3428 -1.2290 26 6 13.0342 0.1789 -1.5925 27 8 13.8801 0.3035 -0.7388 28 8 13.3111 0.5061 -2.8644 29 8 4.6409 -0.3146 0.8687 30 1 -0.3633 0.0772 1.0248 31 1 -0.3634 0.8488 -0.5793 32 1 -0.3633 -0.9262 -0.4454 33 1 3.1715 -0.8751 -1.2683 34 1 1.6115 -1.8588 -1.2681 35 1 3.0683 -1.2314 3.5325 36 1 5.6134 -0.4254 3.9430 37 1 7.3469 0.9293 2.4044 38 1 6.9760 1.0480 0.6676 39 1 7.5636 -1.3436 0.3786 40 1 7.9345 -1.4623 2.1154 41 1 11.9378 -2.1874 2.2141 42 1 11.8153 0.2794 0.8280 43 1 12.3698 -1.3839 0.5215 44 1 11.4693 -1.2588 -1.7855 45 1 10.9149 0.4046 -1.4789 46 1 14.2009 0.8366 -3.0490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594278001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:28 Heat of formation + Delta-G solvation = -118.038942 kcal Electronic energy + Delta-G solvation = -28303.332173 eV Core-core repulsion = 24159.467135 eV Total energy + Delta-G solvation = -4143.865038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.60993 -41.45433 -40.61848 -38.68079 -37.47387 -37.04846 -35.00954 -33.86408 -33.72565 -32.44681 -30.49643 -28.81896 -27.04257 -26.38721 -24.73458 -23.00725 -22.72641 -22.05151 -21.62992 -21.25825 -20.81622 -19.44197 -18.91759 -18.22684 -17.65461 -17.47538 -17.10173 -16.98306 -16.67609 -16.30634 -15.83522 -15.55630 -15.36958 -14.96247 -14.59313 -14.52887 -14.44425 -14.09959 -13.91911 -13.76112 -13.61536 -13.30320 -13.26761 -13.06502 -12.92155 -12.77578 -12.74579 -12.62394 -12.36948 -12.19412 -12.05358 -11.89649 -11.79917 -11.72352 -11.54469 -11.08793 -11.01694 -10.77121 -10.49464 -9.83786 -9.11283 -8.73610 -6.13512 0.66253 1.10770 1.53688 1.59413 1.62030 1.80217 1.85074 1.86779 2.02827 2.47175 2.85420 2.88601 3.04047 3.44518 3.73827 3.83056 3.88503 3.90169 3.94442 4.04315 4.08331 4.16850 4.30318 4.36603 4.39234 4.40099 4.57435 4.64104 4.70017 4.78940 4.81813 4.89322 4.90711 4.96021 4.99260 5.00993 5.07768 5.14597 5.18525 5.22301 5.41089 5.51221 5.58729 5.60906 5.92262 6.22391 6.28760 6.93041 6.94810 7.44260 7.77744 8.48240 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011986 B = 0.002629 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.419984 B =10646.246885 C =11469.640973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.136 4.136 3 H 0.090 0.910 4 C -0.167 4.167 5 C -0.087 4.087 6 H 0.156 0.844 7 C 0.003 3.997 8 C -0.209 4.209 9 C -0.213 4.213 10 C -0.020 4.020 11 C -0.011 4.011 12 C -0.099 4.099 13 C 0.463 3.537 14 O -0.626 6.626 15 N -0.458 5.458 16 C -0.440 4.440 17 H 0.096 0.904 18 C -0.022 4.022 19 N -0.886 5.886 20 Si 1.114 2.886 21 H -0.272 1.272 22 H -0.259 1.259 23 H -0.287 1.287 24 C 0.117 3.883 25 C -0.113 4.113 26 C 0.496 3.504 27 O -0.550 6.550 28 O -0.505 6.505 29 O -0.189 6.189 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.262 0.738 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.106 0.894 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.766 1.427 -6.104 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.154 4.154 3 H 0.109 0.891 4 C -0.204 4.204 5 C -0.104 4.104 6 H 0.173 0.827 7 C -0.047 4.047 8 C -0.228 4.228 9 C -0.232 4.232 10 C -0.070 4.070 11 C -0.049 4.049 12 C -0.138 4.138 13 C 0.254 3.746 14 O -0.514 6.514 15 N -0.177 5.177 16 C -0.566 4.566 17 H 0.113 0.887 18 C -0.226 4.226 19 N -0.519 5.519 20 Si 0.934 3.066 21 H -0.197 1.197 22 H -0.183 1.183 23 H -0.212 1.212 24 C -0.007 4.007 25 C -0.152 4.152 26 C 0.339 3.661 27 O -0.441 6.441 28 O -0.318 6.318 29 O -0.087 6.087 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.143 0.857 35 H 0.188 0.812 36 H 0.175 0.825 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.137 0.863 45 H 0.124 0.876 46 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -16.898 0.535 -6.120 17.980 hybrid contribution 0.481 1.813 0.589 1.966 sum -16.417 2.347 -5.531 17.482 Atomic orbital electron populations 1.21394 0.90087 1.03207 1.02828 1.22552 0.96849 0.93770 1.02245 0.89150 1.23246 1.02846 1.02078 0.92230 1.20801 0.90934 1.04120 0.94566 0.82651 1.21995 0.87718 1.02710 0.92276 1.21754 0.97318 1.07863 0.95832 1.21849 0.96346 1.06419 0.98556 1.22436 0.91210 1.05717 0.87603 1.19707 0.84615 0.96518 1.04058 1.21223 0.90542 0.98293 1.03781 1.21065 0.88873 0.85850 0.78805 1.90524 1.84488 1.18257 1.58131 1.43724 1.09236 1.06841 1.57878 1.20474 1.03411 0.80632 1.52123 0.88681 1.27694 0.93031 1.08027 0.93857 1.70841 1.37694 1.22738 1.20615 0.82956 0.76752 0.70076 0.76775 1.19718 1.18330 1.21246 1.21021 0.87517 0.99107 0.93072 1.21526 0.91517 1.03957 0.98198 1.23293 0.90064 0.72785 0.79961 1.90711 1.50175 1.51911 1.51314 1.84492 1.41773 1.77036 1.28537 1.83902 1.20436 1.65910 1.38476 0.91299 0.91217 0.91013 0.90001 0.85685 0.81159 0.82472 0.88624 0.90605 0.89381 0.89329 0.92757 0.93293 0.90432 0.86270 0.87562 0.70977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.19 71.98 0.73 -0.51 16 2 C -0.14 -2.21 6.11 -10.79 -0.07 -2.28 16 3 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.17 -2.89 9.81 30.60 0.30 -2.59 16 5 C -0.09 -1.60 5.96 -11.54 -0.07 -1.67 16 6 H 0.16 2.09 8.14 -2.39 -0.02 2.07 16 7 C 0.00 0.07 6.80 24.83 0.17 0.24 16 8 C -0.21 -5.27 10.81 22.19 0.24 -5.03 16 9 C -0.21 -6.13 10.81 22.19 0.24 -5.89 16 10 C -0.02 -0.64 6.57 24.83 0.16 -0.48 16 11 C -0.01 -0.39 5.05 29.85 0.15 -0.24 16 12 C -0.10 -3.82 4.35 29.85 0.13 -3.69 16 13 C 0.46 21.62 7.62 87.66 0.67 22.29 16 14 O -0.63 -31.73 15.54 -3.08 -0.05 -31.77 16 15 N -0.46 -22.20 2.34 -635.54 -1.49 -23.69 16 16 C -0.44 -21.39 8.66 84.04 0.73 -20.66 16 17 H 0.10 4.40 6.92 -2.91 -0.02 4.38 16 18 C -0.02 -1.09 4.79 84.93 0.41 -0.68 16 19 N -0.89 -48.80 12.22 21.66 0.26 -48.54 16 20 Si 1.11 43.36 30.00 68.60 2.06 45.41 16 21 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 22 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 23 H -0.29 -11.49 7.11 99.48 0.71 -10.78 16 24 C 0.12 5.58 3.90 86.38 0.34 5.92 16 25 C -0.11 -4.34 6.13 29.85 0.18 -4.16 16 26 C 0.50 17.58 8.33 71.23 0.59 18.17 16 27 O -0.55 -23.38 16.74 21.95 0.37 -23.01 16 28 O -0.50 -12.99 13.42 -51.33 -0.69 -13.68 16 29 O -0.19 -5.99 10.36 -2.56 -0.03 -6.01 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.59 7.90 -2.39 -0.02 0.57 16 33 H 0.08 1.75 7.97 -2.39 -0.02 1.73 16 34 H 0.13 1.55 8.05 -2.39 -0.02 1.53 16 35 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.10 3.28 8.05 -2.39 -0.02 3.27 16 38 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.09 3.31 7.55 -2.39 -0.02 3.29 16 40 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.26 15.21 7.23 -92.71 -0.67 14.54 16 42 H 0.05 2.51 7.32 -2.39 -0.02 2.49 16 43 H 0.08 4.07 5.35 -2.38 -0.01 4.06 16 44 H 0.12 4.30 8.14 -2.39 -0.02 4.29 16 45 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 46 H 0.43 6.67 9.10 -74.06 -0.67 5.99 16 Total: -1.00 -68.39 394.51 5.78 -62.61 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: 0.43 Total: 39.93 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 4.91 Total: -1.26 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.22 Total: -72.22 kcal Atomic # 8 Polarization: -74.08 SS G_CDS: -0.40 Total: -74.48 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.06 Total: 45.41 kcal Total: -68.39 5.78 -62.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594278001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.428 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds