Wall clock time and date at job start Tue Mar 31 2020 19:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35976 * 117.00113 * 2 1 4 4 C 1.38814 * 120.17523 * 180.02562 * 3 2 1 5 5 C 1.37701 * 119.93496 * 180.02562 * 4 3 2 6 6 C 1.38900 * 120.83682 * 359.71412 * 5 4 3 7 7 C 1.39217 * 118.97017 * 0.41955 * 6 5 4 8 8 C 1.50705 * 119.84583 * 179.72619 * 7 6 5 9 9 N 1.46497 * 109.47254 * 79.99337 * 8 7 6 10 10 C 1.36939 * 119.99692 * 90.00383 * 9 8 7 11 11 H 1.07998 * 120.00299 * 221.90160 * 10 9 8 12 12 C 1.38812 * 119.99814 * 41.89544 * 10 9 8 13 13 N 1.31616 * 120.00063 * 203.48661 * 12 10 9 14 14 Si 1.86793 * 120.00068 * 23.49383 * 12 10 9 15 15 H 1.48500 * 109.47000 * 265.45720 * 14 12 10 16 16 H 1.48499 * 109.47415 * 25.45907 * 14 12 10 17 17 H 1.48503 * 109.47500 * 145.46060 * 14 12 10 18 18 C 1.46501 * 120.00486 * 270.00343 * 9 8 7 19 19 C 1.52995 * 109.47051 * 269.46800 * 18 9 8 20 20 C 1.50697 * 109.47170 * 180.02562 * 19 18 9 21 21 O 1.20835 * 119.99961 * 359.97438 * 20 19 18 22 22 O 1.34228 * 120.00542 * 179.97438 * 20 19 18 23 23 C 1.37954 * 120.31585 * 359.97438 * 7 6 5 24 24 O 1.36239 * 111.20163 * 180.94974 * 6 5 4 25 25 C 1.43766 * 109.23127 * 340.94648 * 24 6 5 26 26 H 1.08999 * 110.74773 * 269.45321 * 25 24 6 27 27 C 1.53003 * 110.75037 * 146.10092 * 25 24 6 28 28 C 1.51655 * 132.11551 * 179.53142 * 5 4 3 29 29 H 1.09005 * 109.46893 * 299.99672 * 1 2 3 30 30 H 1.08997 * 109.47281 * 60.00361 * 1 2 3 31 31 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.03772 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.46610 * 319.99694 * 8 7 6 34 34 H 1.08997 * 109.47497 * 200.00275 * 8 7 6 35 35 H 0.96997 * 120.00621 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.46927 * 29.46437 * 18 9 8 37 37 H 1.08997 * 109.46838 * 149.46209 * 18 9 8 38 38 H 1.09003 * 109.46959 * 299.99617 * 19 18 9 39 39 H 1.09004 * 109.47550 * 59.99627 * 19 18 9 40 40 H 0.96695 * 117.00333 * 179.97438 * 22 20 19 41 41 H 1.08001 * 119.85737 * 179.72277 * 23 7 6 42 42 H 1.08996 * 109.46844 * 306.63146 * 27 25 24 43 43 H 1.09001 * 109.46914 * 66.63210 * 27 25 24 44 44 H 1.08999 * 109.46971 * 186.63208 * 27 25 24 45 45 H 1.09004 * 110.93125 * 313.71061 * 28 5 4 46 46 H 1.08998 * 110.93790 * 77.38543 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4324 1.2884 -0.0005 5 6 4.0524 2.5179 0.0000 6 6 3.3081 3.6907 -0.0049 7 6 1.9184 3.6073 -0.0014 8 6 1.0915 4.8673 -0.0004 9 7 1.0209 5.4062 -1.3608 10 6 0.0109 5.0172 -2.1997 11 1 0.2231 4.8010 -3.2363 12 6 -1.2856 4.9006 -1.7177 13 7 -2.1481 4.1186 -2.3316 14 14 -1.8062 5.8537 -0.1979 15 1 -1.6503 4.9941 1.0029 16 1 -0.9550 7.0621 -0.0556 17 1 -3.2275 6.2625 -0.3327 18 6 2.0307 6.3614 -1.8237 19 6 1.5613 7.7860 -1.5221 20 6 2.5997 8.7685 -1.9989 21 8 3.6117 8.3701 -2.5255 22 8 2.4006 10.0862 -1.8386 23 6 1.2946 2.3769 0.0062 24 8 4.1164 4.7872 -0.0244 25 6 5.4345 4.4116 0.4096 26 1 5.5333 4.5274 1.4889 27 6 6.5001 5.2280 -0.3246 28 6 5.5148 2.9195 0.0088 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0239 0.3848 -0.0014 33 1 1.5520 5.6034 0.6586 34 1 0.0857 4.6415 0.3538 35 1 -3.0542 4.0374 -1.9950 36 1 2.9726 6.1725 -1.3087 37 1 2.1744 6.2459 -2.8980 38 1 0.6194 7.9749 -2.0371 39 1 1.4175 7.9014 -0.4478 40 1 3.0950 10.6774 -2.1600 41 1 0.2161 2.3209 0.0133 42 1 6.3453 5.1438 -1.4002 43 1 6.4250 6.2740 -0.0274 44 1 7.4892 4.8478 -0.0690 45 1 6.0715 2.3464 0.7504 46 1 5.9561 2.8053 -0.9812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599463013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:02 Heat of formation + Delta-G solvation = -113.955931 kcal Electronic energy + Delta-G solvation = -30423.454374 eV Core-core repulsion = 26279.766389 eV Total energy + Delta-G solvation = -4143.687985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.86860 -39.83888 -38.97844 -36.81624 -35.88870 -35.41376 -32.98341 -32.10158 -31.39215 -30.08916 -29.35237 -27.03702 -26.25329 -25.47550 -24.92584 -21.98128 -21.64121 -21.13747 -20.76960 -19.60657 -17.78901 -17.46798 -17.20118 -16.67622 -16.47953 -16.07547 -15.67561 -15.52173 -15.24881 -15.02918 -14.60520 -13.91173 -13.69161 -13.40479 -13.20474 -13.09892 -12.98366 -12.79635 -12.61500 -12.45768 -12.30410 -12.12235 -11.95934 -11.85425 -11.60195 -11.50231 -11.22418 -11.16749 -11.08148 -10.96578 -10.76302 -10.32333 -10.17333 -10.13214 -9.98756 -9.79523 -9.68176 -8.59078 -8.32505 -7.23169 -6.89354 -6.11325 -3.55219 1.69204 1.88866 2.59657 3.22008 3.39485 3.42186 3.44240 3.48082 3.71403 4.07679 4.42360 4.64495 4.75701 5.00188 5.07856 5.19707 5.27399 5.29974 5.34134 5.49704 5.52626 5.55891 5.57725 5.65852 5.71390 5.73828 5.74998 5.87575 5.89893 5.97403 6.05007 6.09555 6.17433 6.29918 6.39930 6.46070 6.55160 6.65770 6.74998 6.75902 6.88417 6.99433 7.13615 7.50400 7.84021 7.96478 8.22603 8.36325 8.88682 9.59437 10.03468 11.03362 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008175 B = 0.006354 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.324339 B = 4405.387028 C = 7292.025528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.323 6.323 3 C 0.097 3.903 4 C -0.117 4.117 5 C -0.148 4.148 6 C 0.078 3.922 7 C -0.055 4.055 8 C 0.172 3.828 9 N -0.588 5.588 10 C -0.270 4.270 11 H 0.078 0.922 12 C 0.045 3.955 13 N -0.890 5.890 14 Si 0.863 3.137 15 H -0.284 1.284 16 H -0.263 1.263 17 H -0.298 1.298 18 C 0.158 3.842 19 C -0.136 4.136 20 C 0.480 3.520 21 O -0.521 6.521 22 O -0.525 6.525 23 C -0.148 4.148 24 O -0.293 6.293 25 C 0.075 3.925 26 H 0.079 0.921 27 C -0.147 4.147 28 C -0.099 4.099 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.399 0.601 41 H 0.136 0.864 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.779 0.044 7.242 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.237 6.237 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.149 4.149 6 C 0.033 3.967 7 C -0.058 4.058 8 C 0.047 3.953 9 N -0.308 5.308 10 C -0.398 4.398 11 H 0.095 0.905 12 C -0.157 4.157 13 N -0.529 5.529 14 Si 0.692 3.308 15 H -0.212 1.212 16 H -0.188 1.188 17 H -0.226 1.226 18 C 0.032 3.968 19 C -0.176 4.176 20 C 0.323 3.677 21 O -0.409 6.409 22 O -0.337 6.337 23 C -0.168 4.168 24 O -0.208 6.208 25 C 0.019 3.981 26 H 0.097 0.903 27 C -0.204 4.204 28 C -0.137 4.137 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.141 0.859 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.256 0.744 41 H 0.154 0.846 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.583 -0.349 7.132 13.607 hybrid contribution -0.293 0.890 0.571 1.098 sum 11.289 0.542 7.703 13.678 Atomic orbital electron populations 1.23037 0.78321 1.03246 1.02185 1.85965 1.21372 1.26815 1.89531 1.18684 0.91735 0.84243 1.00127 1.19173 0.91076 0.96399 1.06957 1.20341 0.94939 0.93112 1.06502 1.19140 0.91186 0.85264 1.01105 1.19841 0.89951 0.97189 0.98860 1.20225 0.97029 0.90171 0.87877 1.44086 1.29830 1.45285 1.11568 1.18787 0.85179 1.41484 0.94387 0.90476 1.25558 0.95786 0.97074 0.97278 1.69903 1.05793 1.35411 1.41833 0.87121 0.77543 0.82510 0.83600 1.21171 1.18768 1.22561 1.20912 0.92031 0.84166 0.99703 1.22381 0.97448 0.94723 1.03087 1.24142 0.87330 0.81392 0.74804 1.90672 1.29605 1.79565 1.41058 1.84636 1.51989 1.19383 1.77648 1.20927 1.00361 0.90519 1.04982 1.86905 1.20018 1.31221 1.82657 1.23270 0.82868 0.93333 0.98613 0.90309 1.21843 0.96603 1.00399 1.01583 1.21785 0.93401 0.95478 1.02991 0.92967 0.91708 0.88791 0.85892 0.92954 0.91825 0.92611 0.91365 0.92315 0.87585 0.88905 0.74358 0.84626 0.91235 0.91550 0.90904 0.89724 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.82 101.05 0.99 1.38 16 2 O -0.32 -5.44 10.50 -19.66 -0.21 -5.65 16 3 C 0.10 1.76 6.69 -39.20 -0.26 1.49 16 4 C -0.12 -1.94 9.98 -39.56 -0.39 -2.34 16 5 C -0.15 -2.44 6.27 -104.10 -0.65 -3.09 16 6 C 0.08 1.46 6.73 -38.97 -0.26 1.20 16 7 C -0.05 -1.12 5.48 -104.36 -0.57 -1.69 16 8 C 0.17 3.70 4.61 -5.19 -0.02 3.68 16 9 N -0.59 -13.54 1.97 -174.61 -0.34 -13.88 16 10 C -0.27 -7.17 9.85 -15.06 -0.15 -7.32 16 11 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 12 C 0.04 1.21 5.25 -17.43 -0.09 1.12 16 13 N -0.89 -25.46 13.97 55.49 0.78 -24.68 16 14 Si 0.86 20.55 25.39 -169.99 -4.32 16.24 16 15 H -0.28 -6.57 6.66 56.52 0.38 -6.19 16 16 H -0.26 -6.02 7.11 56.52 0.40 -5.61 16 17 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 18 C 0.16 3.29 4.96 -4.04 -0.02 3.27 16 19 C -0.14 -2.49 6.13 -27.89 -0.17 -2.66 16 20 C 0.48 8.02 8.33 36.00 0.30 8.32 16 21 O -0.52 -9.84 16.74 -18.76 -0.31 -10.15 16 22 O -0.53 -7.04 13.42 -39.25 -0.53 -7.57 16 23 C -0.15 -2.94 8.64 -39.52 -0.34 -3.28 16 24 O -0.29 -5.12 8.68 -20.50 -0.18 -5.30 16 25 C 0.08 0.98 4.26 -25.83 -0.11 0.87 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 C -0.15 -1.59 9.58 37.16 0.36 -1.24 16 28 C -0.10 -1.25 6.65 -26.52 -0.18 -1.43 16 29 H 0.05 0.70 7.65 -51.93 -0.40 0.31 16 30 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.05 1.04 8.07 -51.93 -0.42 0.62 16 34 H 0.06 1.44 3.77 -51.93 -0.20 1.25 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.07 1.40 5.80 -51.93 -0.30 1.10 16 37 H 0.06 1.29 8.00 -51.93 -0.42 0.88 16 38 H 0.11 2.02 8.14 -51.93 -0.42 1.59 16 39 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.40 3.40 9.10 45.56 0.41 3.81 16 41 H 0.14 2.75 6.26 -52.49 -0.33 2.43 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.05 7.92 -51.93 -0.41 0.64 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -31.99 378.61 -6.82 -38.81 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.84 Total: 8.20 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.58 Total: -1.73 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.43 Total: -38.57 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.23 Total: -28.67 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.32 Total: 16.24 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.99 -6.82 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599463013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.141 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds