Wall clock time and date at job start Tue Mar 31 2020 19:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35976 * 117.00113 * 2 1 4 4 C 1.38814 * 120.17523 * 180.02562 * 3 2 1 5 5 C 1.37701 * 119.93496 * 180.02562 * 4 3 2 6 6 C 1.38900 * 120.83682 * 359.71412 * 5 4 3 7 7 C 1.39217 * 118.97017 * 0.41955 * 6 5 4 8 8 C 1.50705 * 119.84583 * 179.72619 * 7 6 5 9 9 N 1.46497 * 109.47254 * 79.99337 * 8 7 6 10 10 C 1.36939 * 119.99692 * 90.00383 * 9 8 7 11 11 H 1.07998 * 120.00299 * 221.90160 * 10 9 8 12 12 C 1.38812 * 119.99814 * 41.89544 * 10 9 8 13 13 N 1.31616 * 120.00063 * 203.48661 * 12 10 9 14 14 Si 1.86793 * 120.00068 * 23.49383 * 12 10 9 15 15 H 1.48500 * 109.47000 * 265.45720 * 14 12 10 16 16 H 1.48499 * 109.47415 * 25.45907 * 14 12 10 17 17 H 1.48503 * 109.47500 * 145.46060 * 14 12 10 18 18 C 1.46501 * 120.00486 * 270.00343 * 9 8 7 19 19 C 1.52995 * 109.47051 * 269.46800 * 18 9 8 20 20 C 1.50697 * 109.47170 * 180.02562 * 19 18 9 21 21 O 1.20835 * 119.99961 * 359.97438 * 20 19 18 22 22 O 1.34228 * 120.00542 * 179.97438 * 20 19 18 23 23 C 1.37954 * 120.31585 * 359.97438 * 7 6 5 24 24 O 1.36239 * 111.20163 * 180.94974 * 6 5 4 25 25 C 1.43766 * 109.23127 * 340.94648 * 24 6 5 26 26 H 1.08999 * 110.74773 * 269.45321 * 25 24 6 27 27 C 1.53003 * 110.75037 * 146.10092 * 25 24 6 28 28 C 1.51655 * 132.11551 * 179.53142 * 5 4 3 29 29 H 1.09005 * 109.46893 * 299.99672 * 1 2 3 30 30 H 1.08997 * 109.47281 * 60.00361 * 1 2 3 31 31 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.03772 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.46610 * 319.99694 * 8 7 6 34 34 H 1.08997 * 109.47497 * 200.00275 * 8 7 6 35 35 H 0.96997 * 120.00621 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.46927 * 29.46437 * 18 9 8 37 37 H 1.08997 * 109.46838 * 149.46209 * 18 9 8 38 38 H 1.09003 * 109.46959 * 299.99617 * 19 18 9 39 39 H 1.09004 * 109.47550 * 59.99627 * 19 18 9 40 40 H 0.96695 * 117.00333 * 179.97438 * 22 20 19 41 41 H 1.08001 * 119.85737 * 179.72277 * 23 7 6 42 42 H 1.08996 * 109.46844 * 306.63146 * 27 25 24 43 43 H 1.09001 * 109.46914 * 66.63210 * 27 25 24 44 44 H 1.08999 * 109.46971 * 186.63208 * 27 25 24 45 45 H 1.09004 * 110.93125 * 313.71061 * 28 5 4 46 46 H 1.08998 * 110.93790 * 77.38543 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4324 1.2884 -0.0005 5 6 4.0524 2.5179 0.0000 6 6 3.3081 3.6907 -0.0049 7 6 1.9184 3.6073 -0.0014 8 6 1.0915 4.8673 -0.0004 9 7 1.0209 5.4062 -1.3608 10 6 0.0109 5.0172 -2.1997 11 1 0.2231 4.8010 -3.2363 12 6 -1.2856 4.9006 -1.7177 13 7 -2.1481 4.1186 -2.3316 14 14 -1.8062 5.8537 -0.1979 15 1 -1.6503 4.9941 1.0029 16 1 -0.9550 7.0621 -0.0556 17 1 -3.2275 6.2625 -0.3327 18 6 2.0307 6.3614 -1.8237 19 6 1.5613 7.7860 -1.5221 20 6 2.5997 8.7685 -1.9989 21 8 3.6117 8.3701 -2.5255 22 8 2.4006 10.0862 -1.8386 23 6 1.2946 2.3769 0.0062 24 8 4.1164 4.7872 -0.0244 25 6 5.4345 4.4116 0.4096 26 1 5.5333 4.5274 1.4889 27 6 6.5001 5.2280 -0.3246 28 6 5.5148 2.9195 0.0088 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0239 0.3848 -0.0014 33 1 1.5520 5.6034 0.6586 34 1 0.0857 4.6415 0.3538 35 1 -3.0542 4.0374 -1.9950 36 1 2.9726 6.1725 -1.3087 37 1 2.1744 6.2459 -2.8980 38 1 0.6194 7.9749 -2.0371 39 1 1.4175 7.9014 -0.4478 40 1 3.0950 10.6774 -2.1600 41 1 0.2161 2.3209 0.0133 42 1 6.3453 5.1438 -1.4002 43 1 6.4250 6.2740 -0.0274 44 1 7.4892 4.8478 -0.0690 45 1 6.0715 2.3464 0.7504 46 1 5.9561 2.8053 -0.9812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599463013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:01 Heat of formation + Delta-G solvation = -134.576634 kcal Electronic energy + Delta-G solvation = -30424.348555 eV Core-core repulsion = 26279.766389 eV Total energy + Delta-G solvation = -4144.582166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.14765 -41.16897 -40.27332 -38.42486 -37.16412 -36.85060 -34.29024 -34.01834 -32.71617 -31.50482 -30.77768 -28.43940 -27.36905 -27.01026 -26.67277 -23.53015 -22.85100 -22.40189 -22.12950 -21.19888 -19.24221 -18.96020 -18.48202 -18.07772 -17.96041 -17.50056 -17.19242 -16.88615 -16.68273 -16.43947 -15.92496 -15.47126 -15.26895 -15.03748 -14.55493 -14.47569 -14.29833 -14.02822 -13.98940 -13.86340 -13.74887 -13.35751 -13.24548 -13.17032 -12.96445 -12.86428 -12.76014 -12.63274 -12.48903 -12.24684 -12.08630 -11.94480 -11.78148 -11.68403 -11.55037 -11.50051 -11.04195 -10.63987 -9.73016 -8.82060 -8.56927 -8.21824 -5.65194 0.29600 0.48279 1.25655 1.31505 1.42617 1.53026 2.16581 2.25314 2.41558 2.49786 2.66775 3.06990 3.52026 3.53930 3.70588 3.84735 4.02228 4.10624 4.11484 4.19008 4.21398 4.32675 4.32934 4.36628 4.46598 4.55841 4.59929 4.68701 4.71164 4.74418 4.78820 4.82842 4.87073 4.96373 4.99413 5.12231 5.24345 5.29322 5.30197 5.37535 5.49645 5.64354 5.67379 5.92998 6.19761 6.22646 6.49608 6.92518 7.07340 7.56031 8.03223 8.96902 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008175 B = 0.006354 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.324339 B = 4405.387028 C = 7292.025528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.325 6.325 3 C 0.087 3.913 4 C -0.113 4.113 5 C -0.145 4.145 6 C 0.068 3.932 7 C -0.083 4.083 8 C 0.175 3.825 9 N -0.595 5.595 10 C -0.263 4.263 11 H 0.031 0.969 12 C 0.002 3.998 13 N -0.935 5.935 14 Si 0.923 3.077 15 H -0.274 1.274 16 H -0.244 1.244 17 H -0.304 1.304 18 C 0.164 3.836 19 C -0.132 4.132 20 C 0.495 3.505 21 O -0.546 6.546 22 O -0.513 6.513 23 C -0.168 4.168 24 O -0.314 6.314 25 C 0.067 3.933 26 H 0.098 0.902 27 C -0.142 4.142 28 C -0.092 4.092 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.425 0.575 41 H 0.118 0.882 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.120 0.880 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.395 0.651 9.302 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.240 6.240 3 C 0.042 3.958 4 C -0.132 4.132 5 C -0.146 4.146 6 C 0.023 3.977 7 C -0.087 4.087 8 C 0.051 3.949 9 N -0.316 5.316 10 C -0.393 4.393 11 H 0.048 0.952 12 C -0.196 4.196 13 N -0.577 5.577 14 Si 0.750 3.250 15 H -0.201 1.201 16 H -0.167 1.167 17 H -0.233 1.233 18 C 0.039 3.961 19 C -0.172 4.172 20 C 0.338 3.662 21 O -0.436 6.436 22 O -0.327 6.327 23 C -0.187 4.187 24 O -0.230 6.230 25 C 0.011 3.989 26 H 0.116 0.884 27 C -0.199 4.199 28 C -0.128 4.128 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.148 0.852 32 H 0.170 0.830 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.286 0.714 41 H 0.136 0.864 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.126 0.874 45 H 0.138 0.862 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.242 0.303 9.210 16.963 hybrid contribution -0.977 0.678 -0.118 1.195 sum 13.265 0.982 9.092 16.112 Atomic orbital electron populations 1.23187 0.77227 1.05260 1.01183 1.85957 1.22473 1.26159 1.89382 1.18883 0.92598 0.84058 1.00222 1.19542 0.90548 0.97704 1.05402 1.20838 0.97140 0.92186 1.04401 1.19228 0.90835 0.86686 1.00977 1.19777 0.91107 0.96641 1.01157 1.20169 0.96630 0.91294 0.86834 1.44056 1.29310 1.46493 1.11701 1.18475 0.86508 1.41110 0.93166 0.95172 1.26032 0.95533 0.97547 1.00498 1.70016 1.06229 1.37200 1.44263 0.86157 0.76740 0.81747 0.80406 1.20125 1.16684 1.23259 1.20754 0.91667 0.85507 0.98191 1.22087 0.97478 0.93741 1.03912 1.23530 0.86206 0.82285 0.74154 1.90677 1.30466 1.80281 1.42206 1.84542 1.52981 1.17987 1.77147 1.20860 0.99756 0.91502 1.06626 1.86873 1.21827 1.31413 1.82877 1.23670 0.81194 0.93980 1.00028 0.88392 1.21863 0.97610 1.00193 1.00218 1.21914 0.90913 0.95341 1.04682 0.92497 0.94243 0.85198 0.83034 0.91315 0.93397 0.92613 0.90913 0.94689 0.88355 0.87552 0.71362 0.86433 0.92893 0.91827 0.87436 0.86174 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.82 113.37 1.11 1.87 16 2 O -0.33 -10.87 10.50 -93.28 -0.98 -11.85 16 3 C 0.09 3.17 6.69 22.51 0.15 3.32 16 4 C -0.11 -3.56 9.98 22.28 0.22 -3.34 16 5 C -0.14 -4.47 6.27 -19.53 -0.12 -4.59 16 6 C 0.07 2.50 6.73 22.66 0.15 2.66 16 7 C -0.08 -3.47 5.48 -19.69 -0.11 -3.58 16 8 C 0.18 7.63 4.61 85.64 0.40 8.02 16 9 N -0.59 -28.17 1.97 -706.36 -1.39 -29.56 16 10 C -0.26 -14.73 9.85 84.03 0.83 -13.90 16 11 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 12 C 0.00 0.13 5.25 84.86 0.45 0.57 16 13 N -0.94 -56.10 13.97 21.65 0.30 -55.80 16 14 Si 0.92 43.25 25.39 68.60 1.74 44.99 16 15 H -0.27 -12.35 6.66 99.48 0.66 -11.69 16 16 H -0.24 -10.53 7.11 99.48 0.71 -9.83 16 17 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 18 C 0.16 6.95 4.96 86.38 0.43 7.38 16 19 C -0.13 -4.72 6.13 29.85 0.18 -4.54 16 20 C 0.49 15.72 8.33 71.23 0.59 16.31 16 21 O -0.55 -20.04 16.74 21.94 0.37 -19.68 16 22 O -0.51 -12.26 13.42 -51.40 -0.69 -12.95 16 23 C -0.17 -6.89 8.64 22.31 0.19 -6.70 16 24 O -0.31 -10.57 8.68 -96.28 -0.84 -11.41 16 25 C 0.07 1.52 4.26 31.18 0.13 1.65 16 26 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 27 C -0.14 -2.65 9.58 71.98 0.69 -1.96 16 28 C -0.09 -1.97 6.65 30.73 0.20 -1.76 16 29 H 0.06 1.57 7.65 -2.38 -0.02 1.56 16 30 H 0.04 1.33 7.68 -2.39 -0.02 1.31 16 31 H 0.13 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 33 H 0.07 2.70 8.07 -2.39 -0.02 2.68 16 34 H 0.05 2.21 3.77 -2.39 -0.01 2.20 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.07 3.01 5.80 -2.39 -0.01 2.99 16 37 H 0.03 1.61 8.00 -2.39 -0.02 1.59 16 38 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.42 5.80 9.10 -74.06 -0.67 5.12 16 41 H 0.12 5.11 6.26 -2.91 -0.02 5.09 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.10 1.97 7.92 -2.39 -0.02 1.95 16 Total: -1.00 -72.91 378.61 4.31 -68.60 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.29 Total: 26.24 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 5.50 Total: 1.42 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -1.09 Total: -85.36 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -2.14 Total: -55.89 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.74 Total: 44.99 kcal Total: -72.91 4.31 -68.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599463013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.981 kcal (2) G-P(sol) polarization free energy of solvation -72.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds