Wall clock time and date at job start Tue Mar 31 2020 19:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47057 * 2 1 4 4 O 1.42893 * 109.47132 * 120.00542 * 2 1 3 5 5 C 1.42907 * 113.99998 * 149.99964 * 4 2 1 6 6 H 1.08994 * 109.46871 * 31.28484 * 5 4 2 7 7 C 1.50701 * 109.46780 * 271.28997 * 5 4 2 8 8 O 1.21290 * 120.00411 * 351.73220 * 7 5 4 9 9 N 1.34779 * 119.99881 * 171.73606 * 7 5 4 10 10 C 1.37097 * 119.99631 * 355.38721 * 9 7 5 11 11 H 1.08003 * 120.00061 * 322.01631 * 10 9 7 12 12 C 1.38954 * 119.99954 * 142.02036 * 10 9 7 13 13 N 1.31412 * 119.99897 * 159.66143 * 12 10 9 14 14 Si 1.86795 * 119.99858 * 339.66245 * 12 10 9 15 15 H 1.48495 * 109.47265 * 95.30224 * 14 12 10 16 16 H 1.48503 * 109.46796 * 215.29985 * 14 12 10 17 17 H 1.48498 * 109.47209 * 335.29567 * 14 12 10 18 18 C 1.46494 * 119.99995 * 175.38220 * 9 7 5 19 19 C 1.53001 * 109.47140 * 90.00249 * 18 9 7 20 20 C 1.50697 * 109.47216 * 179.97438 * 19 18 9 21 21 O 1.20826 * 120.00121 * 359.97438 * 20 19 18 22 22 O 1.34232 * 120.00123 * 180.02562 * 20 19 18 23 23 C 1.50698 * 109.47057 * 151.29147 * 5 4 2 24 24 C 1.38237 * 119.99633 * 220.39747 * 23 5 4 25 25 C 1.38242 * 119.99880 * 179.97438 * 24 23 5 26 26 C 1.38230 * 119.99786 * 359.95954 * 25 24 23 27 27 C 1.38237 * 120.00500 * 359.97438 * 26 25 24 28 28 C 1.38230 * 120.00367 * 40.37710 * 23 5 4 29 29 H 1.09005 * 109.47115 * 299.99658 * 1 2 3 30 30 H 1.09000 * 109.47242 * 59.99343 * 1 2 3 31 31 H 1.08997 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46622 * 240.00444 * 2 1 3 33 33 H 1.09002 * 109.47042 * 60.00701 * 3 2 1 34 34 H 1.09004 * 109.47012 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47630 * 300.00419 * 3 2 1 36 36 H 0.96997 * 119.99767 * 185.02202 * 13 12 10 37 37 H 1.09005 * 109.47303 * 210.00256 * 18 9 7 38 38 H 1.09001 * 109.47521 * 330.00031 * 18 9 7 39 39 H 1.08996 * 109.47028 * 300.00409 * 19 18 9 40 40 H 1.09008 * 109.46803 * 59.99816 * 19 18 9 41 41 H 0.96692 * 117.00247 * 180.02562 * 22 20 19 42 42 H 1.08000 * 120.00165 * 359.97438 * 24 23 5 43 43 H 1.07993 * 119.99940 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00211 * 179.72219 * 26 25 24 45 45 H 1.08000 * 120.00332 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.99871 * 359.97438 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9884 6 1 3.8620 -0.7702 0.2636 7 6 3.0400 -2.7270 0.4852 8 8 1.9163 -3.1814 0.4399 9 7 4.0865 -3.4764 0.0857 10 6 5.3443 -2.9322 0.0473 11 1 5.4806 -1.9093 -0.2713 12 6 6.4437 -3.6968 0.4182 13 7 7.6479 -3.3522 0.0206 14 14 6.2098 -5.2144 1.4818 15 1 6.1202 -6.4171 0.6155 16 1 7.3645 -5.3544 2.4051 17 1 4.9591 -5.0781 2.2707 18 6 3.8800 -4.8724 -0.3075 19 6 3.5862 -4.9417 -1.8075 20 6 3.3744 -6.3778 -2.2121 21 8 3.4511 -7.2559 -1.3857 22 8 3.1015 -6.6816 -3.4908 23 6 3.9961 -1.3751 2.3057 24 6 5.3583 -1.1440 2.3502 25 6 6.0281 -1.1898 3.5587 26 6 5.3355 -1.4658 4.7227 27 6 3.9730 -1.6955 4.6784 28 6 3.3037 -1.6520 3.4696 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.6767 1.9562 0.8901 34 1 3.1300 1.4424 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 8.4059 -3.9245 0.2176 37 1 4.7783 -5.4490 -0.0863 38 1 3.0375 -5.2854 0.2472 39 1 2.6880 -4.3652 -2.0287 40 1 4.4288 -4.5287 -2.3622 41 1 2.9732 -7.6164 -3.7022 42 1 5.8993 -0.9277 1.4408 43 1 7.0923 -1.0097 3.5934 44 1 5.8594 -1.5061 5.6662 45 1 3.4320 -1.9116 5.5878 46 1 2.2394 -1.8318 3.4350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603908210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:59 Heat of formation + Delta-G solvation = -138.272502 kcal Electronic energy + Delta-G solvation = -30744.560402 eV Core-core repulsion = 26599.817972 eV Total energy + Delta-G solvation = -4144.742431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.12305 -39.68900 -38.10006 -37.46472 -35.96649 -35.09721 -33.01444 -32.33459 -31.24509 -30.37258 -30.24469 -27.07054 -26.53073 -25.17148 -24.06372 -22.09279 -21.36291 -20.86451 -20.69967 -19.19225 -17.98070 -17.27494 -16.94036 -16.40307 -16.24268 -16.13318 -15.63183 -15.10431 -14.80139 -14.45151 -14.14829 -14.08889 -13.92936 -13.36580 -13.16737 -12.98128 -12.79998 -12.63795 -12.58754 -12.41742 -12.12964 -12.05687 -11.95042 -11.78127 -11.54387 -11.33862 -11.30987 -11.20906 -10.93715 -10.55123 -10.49627 -10.38310 -10.33634 -10.05173 -9.94977 -9.83599 -9.20242 -8.70583 -8.27494 -8.09298 -7.88388 -6.58526 -4.23098 1.87968 2.04613 2.47872 3.04020 3.18466 3.21703 3.30733 3.52830 3.89444 4.05026 4.29961 4.57546 4.84204 5.13077 5.26533 5.30407 5.37048 5.41941 5.46806 5.47221 5.59007 5.65773 5.74482 5.75426 5.78465 5.88900 5.92736 5.99818 6.02537 6.09618 6.15532 6.23066 6.25355 6.36050 6.46376 6.47790 6.53129 6.65173 6.69974 7.00764 7.09793 7.17201 7.21388 7.57701 7.62468 7.88739 8.05207 8.12544 8.80864 9.17546 9.50030 10.47844 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009118 B = 0.006014 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3070.238285 B = 4655.066726 C = 6590.411409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 C -0.174 4.174 4 O -0.353 6.353 5 C 0.137 3.863 6 H 0.086 0.914 7 C 0.464 3.536 8 O -0.577 6.577 9 N -0.458 5.458 10 C -0.351 4.351 11 H 0.107 0.893 12 C 0.080 3.920 13 N -0.853 5.853 14 Si 0.865 3.135 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.258 1.258 18 C 0.116 3.884 19 C -0.122 4.122 20 C 0.484 3.516 21 O -0.520 6.520 22 O -0.520 6.520 23 C -0.067 4.067 24 C -0.062 4.062 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.140 4.140 28 C -0.092 4.092 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.277 0.723 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.403 0.597 42 H 0.136 0.864 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 4.613 -0.722 7.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 C -0.232 4.232 4 O -0.271 6.271 5 C 0.076 3.924 6 H 0.104 0.896 7 C 0.253 3.747 8 O -0.460 6.460 9 N -0.180 5.180 10 C -0.477 4.477 11 H 0.124 0.876 12 C -0.129 4.129 13 N -0.487 5.487 14 Si 0.693 3.307 15 H -0.198 1.198 16 H -0.213 1.213 17 H -0.182 1.182 18 C -0.008 4.008 19 C -0.161 4.161 20 C 0.326 3.674 21 O -0.408 6.408 22 O -0.331 6.331 23 C -0.068 4.068 24 C -0.080 4.080 25 C -0.150 4.150 26 C -0.141 4.141 27 C -0.158 4.158 28 C -0.110 4.110 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.261 0.739 42 H 0.154 0.846 43 H 0.136 0.864 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.735 4.582 -0.188 7.343 hybrid contribution 0.369 -1.675 0.063 1.716 sum -5.366 2.907 -0.126 6.104 Atomic orbital electron populations 1.21795 0.93883 1.02966 1.01536 1.22027 0.94991 0.91745 0.88716 1.22327 1.01739 0.97046 1.02043 1.87955 1.36175 1.68580 1.34439 1.20470 0.84852 0.91626 0.95427 0.89589 1.20889 0.84967 0.88962 0.79874 1.90566 1.23469 1.73606 1.58319 1.43707 1.07869 1.09347 1.57076 1.18991 0.80463 1.01408 1.46886 0.87597 1.25219 0.94738 0.97903 0.95032 1.69658 0.99602 1.37982 1.41465 0.87074 0.79072 0.82847 0.81751 1.19765 1.21252 1.18182 1.21400 1.02121 0.85553 0.91713 1.21750 1.05693 0.88831 0.99809 1.23734 0.71433 0.93001 0.79196 1.90702 1.47467 1.50524 1.52107 1.84578 1.82997 1.34938 1.30626 1.19201 0.93695 1.01178 0.92713 1.21170 0.92978 0.95672 0.98192 1.21041 0.99593 1.01758 0.92574 1.21057 0.94467 1.00553 0.97996 1.20965 0.94639 1.02747 0.97459 1.20947 1.00000 0.98068 0.91966 0.92258 0.91919 0.91507 0.92345 0.92000 0.92357 0.92017 0.91225 0.90732 0.90373 0.87521 0.86636 0.73870 0.84619 0.86430 0.86961 0.86848 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.56 37.16 0.36 -1.59 16 2 C 0.08 1.28 3.11 -26.73 -0.08 1.19 16 3 C -0.17 -2.21 9.52 37.15 0.35 -1.85 16 4 O -0.35 -6.57 8.52 -55.00 -0.47 -7.04 16 5 C 0.14 2.69 1.86 -29.04 -0.05 2.64 16 6 H 0.09 1.61 6.48 -51.93 -0.34 1.27 16 7 C 0.46 10.39 6.87 -10.98 -0.08 10.31 16 8 O -0.58 -13.98 16.15 -14.22 -0.23 -14.21 16 9 N -0.46 -10.36 2.18 -114.81 -0.25 -10.61 16 10 C -0.35 -8.17 6.57 -14.93 -0.10 -8.27 16 11 H 0.11 2.50 6.12 -52.48 -0.32 2.18 16 12 C 0.08 1.96 5.34 -17.47 -0.09 1.87 16 13 N -0.85 -21.51 13.95 55.50 0.77 -20.73 16 14 Si 0.86 20.61 24.92 -169.99 -4.24 16.38 16 15 H -0.27 -6.49 6.70 56.52 0.38 -6.11 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.12 2.54 3.45 -4.04 -0.01 2.53 16 19 C -0.12 -2.24 6.13 -27.88 -0.17 -2.41 16 20 C 0.48 8.40 8.33 36.00 0.30 8.70 16 21 O -0.52 -10.57 16.74 -18.75 -0.31 -10.88 16 22 O -0.52 -6.97 13.42 -39.26 -0.53 -7.50 16 23 C -0.07 -1.32 4.62 -104.63 -0.48 -1.80 16 24 C -0.06 -1.18 8.12 -39.58 -0.32 -1.51 16 25 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 26 C -0.12 -1.99 10.05 -39.58 -0.40 -2.39 16 27 C -0.14 -2.35 10.05 -39.58 -0.40 -2.74 16 28 C -0.09 -1.73 9.35 -39.58 -0.37 -2.10 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.94 7.77 -51.93 -0.40 0.53 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.76 7.94 -51.93 -0.41 0.34 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.28 6.70 8.32 -40.82 -0.34 6.36 16 37 H 0.07 1.75 3.12 -51.93 -0.16 1.58 16 38 H 0.08 1.80 7.45 -51.93 -0.39 1.41 16 39 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 40 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 41 H 0.40 3.47 9.10 45.56 0.41 3.88 16 42 H 0.14 2.65 6.47 -52.49 -0.34 2.32 16 43 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.12 2.29 7.79 -52.49 -0.41 1.88 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -30.02 381.49 -7.19 -37.22 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.74 Total: 11.74 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.95 Total: -0.11 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.52 Total: -31.34 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.54 Total: -39.63 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.24 Total: 16.38 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.02 -7.19 -37.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603908210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.055 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds