Wall clock time and date at job start Tue Mar 31 2020 19:08:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53002 * 109.47385 * 2 1
4 4 O 1.42904 * 109.47188 * 119.99744 * 2 1 3
5 5 C 1.35902 * 116.99359 * 85.22209 * 4 2 1
6 6 C 1.38747 * 120.05913 * 356.31823 * 5 4 2
7 7 C 1.38129 * 119.94524 * 180.02562 * 6 5 4
8 8 C 1.38288 * 120.05312 * 0.02562 * 7 6 5
9 9 C 1.38243 * 120.11107 * 0.02562 * 8 7 6
10 10 C 1.38163 * 120.05997 * 359.97438 * 9 8 7
11 11 C 1.50695 * 120.02918 * 179.97438 * 10 9 8
12 12 C 1.50702 * 109.46904 * 262.23041 * 11 10 9
13 13 O 1.21294 * 120.00258 * 355.70548 * 12 11 10
14 14 N 1.34777 * 119.99784 * 175.69796 * 12 11 10
15 15 C 1.37092 * 120.00520 * 4.86247 * 14 12 11
16 16 H 1.08007 * 119.99608 * 323.98542 * 15 14 12
17 17 C 1.38944 * 120.00405 * 143.98070 * 15 14 12
18 18 N 1.31418 * 120.00273 * 160.91579 * 17 15 14
19 19 Si 1.86799 * 120.00098 * 340.91889 * 17 15 14
20 20 H 1.48500 * 109.47149 * 95.50353 * 19 17 15
21 21 H 1.48502 * 109.47230 * 215.50502 * 19 17 15
22 22 H 1.48498 * 109.46997 * 335.50266 * 19 17 15
23 23 C 1.46505 * 119.99828 * 184.86030 * 14 12 11
24 24 C 1.53000 * 109.47195 * 90.00063 * 23 14 12
25 25 C 1.50697 * 109.47143 * 179.97438 * 24 23 14
26 26 O 1.20822 * 120.00016 * 0.02562 * 25 24 23
27 27 O 1.34232 * 120.00025 * 179.97438 * 25 24 23
28 28 H 1.08996 * 109.47098 * 179.97438 * 1 2 3
29 29 H 1.08995 * 109.47194 * 299.99978 * 1 2 3
30 30 H 1.08997 * 109.46606 * 60.00282 * 1 2 3
31 31 H 1.08998 * 109.47698 * 239.99988 * 2 1 3
32 32 H 1.08998 * 109.47586 * 179.97438 * 3 2 1
33 33 H 1.08997 * 109.47315 * 300.00378 * 3 2 1
34 34 H 1.09006 * 109.46505 * 59.99636 * 3 2 1
35 35 H 1.07997 * 120.03070 * 0.02562 * 6 5 4
36 36 H 1.07993 * 119.97148 * 179.71917 * 7 6 5
37 37 H 1.07997 * 119.94249 * 179.97438 * 8 7 6
38 38 H 1.08007 * 119.96750 * 179.97438 * 9 8 7
39 39 H 1.08994 * 109.47719 * 22.22893 * 11 10 9
40 40 H 1.09002 * 109.47385 * 142.23611 * 11 10 9
41 41 H 0.96994 * 120.00272 * 179.97438 * 18 17 15
42 42 H 1.09000 * 109.47069 * 210.00045 * 23 14 12
43 43 H 1.08998 * 109.47140 * 330.00288 * 23 14 12
44 44 H 1.09000 * 109.47097 * 299.99964 * 24 23 14
45 45 H 1.08998 * 109.46893 * 60.00074 * 24 23 14
46 46 H 0.96699 * 116.99963 * 180.02562 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 8 2.0064 -0.6736 1.1668
5 6 2.1169 -2.0263 1.0963
6 6 1.7023 -2.6989 -0.0442
7 6 1.8152 -4.0738 -0.1132
8 6 2.3405 -4.7800 0.9535
9 6 2.7533 -4.1122 2.0914
10 6 2.6425 -2.7370 2.1653
11 6 3.0921 -2.0098 3.4063
12 6 1.9003 -1.7336 4.2862
13 8 0.7854 -2.0218 3.9054
14 7 2.0734 -1.1664 5.4966
15 6 3.3198 -0.7497 5.8865
16 1 4.1932 -1.3158 5.5980
17 6 3.4596 0.4009 6.6528
18 7 4.5633 0.6051 7.3363
19 14 2.0787 1.6575 6.7115
20 1 1.2306 1.4056 7.9041
21 1 2.6556 3.0234 6.7938
22 1 1.2523 1.5425 5.4831
23 6 0.9293 -0.9952 6.3956
24 6 0.7863 -2.2348 7.2809
25 6 -0.3901 -2.0584 8.2060
26 8 -1.0470 -1.0454 8.1615
27 8 -0.7087 -3.0272 9.0788
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8899
30 1 -0.3632 0.5138 -0.8900
31 1 1.8934 -0.5138 -0.8899
32 1 3.1300 1.4425 0.0005
33 1 1.6767 1.9564 -0.8899
34 1 1.6766 1.9563 0.8900
35 1 1.2916 -2.1480 -0.8774
36 1 1.4884 -4.5982 -0.9989
37 1 2.4276 -5.8550 0.8978
38 1 3.1628 -4.6660 2.9233
39 1 3.8092 -2.6259 3.9487
40 1 3.5622 -1.0674 3.1250
41 1 4.6611 1.4085 7.8709
42 1 1.0878 -0.1175 7.0222
43 1 0.0215 -0.8624 5.8071
44 1 0.6278 -3.1125 6.6542
45 1 1.6941 -2.3677 7.8693
46 1 -1.4717 -2.8687 9.6513
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001603952263.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:08:26
Heat of formation + Delta-G solvation = -133.654744 kcal
Electronic energy + Delta-G solvation = -29939.690759 eV
Core-core repulsion = 25795.148569 eV
Total energy + Delta-G solvation = -4144.542190 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.161 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.22626 -39.96970 -38.70521 -37.39124 -35.95377 -35.08539 -33.24460 -32.37900
-32.00481 -30.77371 -29.63960 -27.28527 -27.06700 -25.02683 -24.22228 -23.16360
-21.47819 -20.75880 -20.49705 -19.03364 -17.99891 -17.84443 -16.84418 -16.36613
-16.28571 -15.83985 -15.61949 -15.38978 -15.19041 -14.81384 -14.39978 -14.22857
-13.94953 -13.52517 -13.24715 -13.09190 -12.91679 -12.64370 -12.58279 -12.51050
-12.25611 -12.19952 -12.07359 -11.82756 -11.64723 -11.43399 -11.29456 -11.15257
-11.03560 -10.80380 -10.74909 -10.58497 -10.37469 -10.29340 -10.13407 -9.79471
-9.22394 -8.77262 -8.42339 -7.89984 -7.74672 -6.49400 -4.11093 1.61935
1.77558 2.51676 3.11914 3.24441 3.27129 3.35577 3.45293 3.76786
4.01445 4.13409 4.53963 4.80159 4.93105 4.95460 5.02490 5.08775
5.16677 5.30754 5.37358 5.50139 5.51399 5.54373 5.60323 5.74161
5.78766 5.79313 5.80728 5.98426 6.04586 6.08222 6.10715 6.17896
6.22219 6.24983 6.31861 6.50733 6.59437 6.62128 6.73363 6.74692
6.88884 7.11688 7.30364 7.77804 8.03435 8.14845 8.21347 8.92861
9.32359 9.65277 10.60773
Molecular weight = 335.16amu
Principal moments of inertia in cm(-1)
A = 0.010401 B = 0.004277 C = 0.003756
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2691.425546 B = 6545.470671 C = 7453.064521
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.077 3.923
3 C -0.149 4.149
4 O -0.297 6.297
5 C 0.151 3.849
6 C -0.216 4.216
7 C -0.091 4.091
8 C -0.162 4.162
9 C -0.075 4.075
10 C -0.083 4.083
11 C -0.076 4.076
12 C 0.494 3.506
13 O -0.585 6.585
14 N -0.470 5.470
15 C -0.347 4.347
16 H 0.109 0.891
17 C 0.068 3.932
18 N -0.861 5.861
19 Si 0.872 3.128
20 H -0.271 1.271
21 H -0.289 1.289
22 H -0.260 1.260
23 C 0.116 3.884
24 C -0.123 4.123
25 C 0.484 3.516
26 O -0.520 6.520
27 O -0.520 6.520
28 H 0.062 0.938
29 H 0.068 0.932
30 H 0.065 0.935
31 H 0.069 0.931
32 H 0.065 0.935
33 H 0.072 0.928
34 H 0.068 0.932
35 H 0.124 0.876
36 H 0.117 0.883
37 H 0.118 0.882
38 H 0.125 0.875
39 H 0.093 0.907
40 H 0.103 0.897
41 H 0.275 0.725
42 H 0.072 0.928
43 H 0.080 0.920
44 H 0.106 0.894
45 H 0.116 0.884
46 H 0.403 0.597
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.021 -5.563 -10.279 12.361
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.021 3.979
3 C -0.206 4.206
4 O -0.210 6.210
5 C 0.106 3.894
6 C -0.234 4.234
7 C -0.110 4.110
8 C -0.180 4.180
9 C -0.094 4.094
10 C -0.084 4.084
11 C -0.115 4.115
12 C 0.284 3.716
13 O -0.469 6.469
14 N -0.191 5.191
15 C -0.473 4.473
16 H 0.127 0.873
17 C -0.139 4.139
18 N -0.496 5.496
19 Si 0.700 3.300
20 H -0.198 1.198
21 H -0.216 1.216
22 H -0.185 1.185
23 C -0.008 4.008
24 C -0.162 4.162
25 C 0.326 3.674
26 O -0.408 6.408
27 O -0.331 6.331
28 H 0.081 0.919
29 H 0.088 0.912
30 H 0.084 0.916
31 H 0.087 0.913
32 H 0.084 0.916
33 H 0.091 0.909
34 H 0.087 0.913
35 H 0.141 0.859
36 H 0.135 0.865
37 H 0.136 0.864
38 H 0.143 0.857
39 H 0.111 0.889
40 H 0.121 0.879
41 H 0.085 0.915
42 H 0.089 0.911
43 H 0.098 0.902
44 H 0.124 0.876
45 H 0.134 0.866
46 H 0.261 0.739
Dipole moment (debyes) X Y Z Total
from point charges -4.239 -5.211 -10.449 12.422
hybrid contribution -1.197 0.848 0.507 1.552
sum -5.436 -4.363 -9.942 12.142
Atomic orbital electron populations
1.22345 0.95277 1.03107 1.02801 1.22380 0.94337 0.93660 0.87537
1.21849 1.02130 0.93754 1.02901 1.86235 1.80470 1.16385 1.37925
1.18753 0.94399 0.82652 0.93635 1.21144 1.08195 0.95604 0.98499
1.20782 0.98509 0.93321 0.98346 1.20903 1.03276 0.99489 0.94380
1.20855 0.98251 0.92611 0.97644 1.18991 1.01912 0.93099 0.94389
1.20265 0.97353 1.01845 0.92071 1.20244 0.89707 0.80469 0.81151
1.90564 1.25900 1.56898 1.73508 1.43693 1.07975 1.55443 1.12000
1.19104 0.83480 1.09071 1.35691 0.87320 1.25277 0.96559 0.96993
0.95069 1.69721 1.27130 1.27186 1.25591 0.87016 0.82145 0.80933
0.79882 1.19805 1.21626 1.18458 1.21346 0.91800 0.95189 0.92420
1.21782 0.94690 1.02904 0.96826 1.23741 0.85128 0.79926 0.78568
1.90697 1.52184 1.29563 1.68350 1.84582 1.51656 1.47779 1.49126
0.91852 0.91246 0.91561 0.91290 0.91600 0.90911 0.91263 0.85868
0.86531 0.86433 0.85676 0.88908 0.87923 0.91450 0.91060 0.90163
0.87591 0.86633 0.73907
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.26 9.20 37.16 0.34 -1.92 16
2 C 0.08 1.03 2.85 -26.73 -0.08 0.96 16
3 C -0.15 -1.74 9.56 37.16 0.36 -1.39 16
4 O -0.30 -5.28 8.99 -19.43 -0.17 -5.45 16
5 C 0.15 2.64 6.48 -39.22 -0.25 2.38 16
6 C -0.22 -3.15 8.28 -39.43 -0.33 -3.48 16
7 C -0.09 -1.21 10.04 -39.60 -0.40 -1.61 16
8 C -0.16 -2.21 10.04 -39.56 -0.40 -2.61 16
9 C -0.08 -1.18 9.67 -39.61 -0.38 -1.56 16
10 C -0.08 -1.49 4.43 -104.48 -0.46 -1.96 16
11 C -0.08 -1.49 4.19 -29.04 -0.12 -1.61 16
12 C 0.49 11.31 7.62 -10.98 -0.08 11.23 16
13 O -0.59 -14.52 15.52 5.55 0.09 -14.44 16
14 N -0.47 -11.08 2.22 -114.81 -0.26 -11.33 16
15 C -0.35 -8.68 9.21 -14.94 -0.14 -8.82 16
16 H 0.11 2.77 7.07 -52.48 -0.37 2.40 16
17 C 0.07 1.78 5.37 -17.47 -0.09 1.69 16
18 N -0.86 -23.29 13.96 55.50 0.77 -22.51 16
19 Si 0.87 21.20 24.75 -169.99 -4.21 17.00 16
20 H -0.27 -6.59 6.73 56.52 0.38 -6.21 16
21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16
22 H -0.26 -6.53 7.07 56.52 0.40 -6.13 16
23 C 0.12 2.64 3.49 -4.04 -0.01 2.62 16
24 C -0.12 -2.33 6.14 -27.88 -0.17 -2.50 16
25 C 0.48 8.63 8.33 36.00 0.30 8.93 16
26 O -0.52 -10.80 16.74 -18.75 -0.31 -11.11 16
27 O -0.52 -7.17 13.42 -39.26 -0.53 -7.70 16
28 H 0.06 0.85 7.07 -51.93 -0.37 0.48 16
29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.07 0.80 6.20 -51.93 -0.32 0.47 16
32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
35 H 0.12 1.52 5.50 -52.49 -0.29 1.23 16
36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16
37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16
38 H 0.13 1.73 8.05 -52.48 -0.42 1.30 16
39 H 0.09 1.67 7.47 -51.93 -0.39 1.28 16
40 H 0.10 2.07 7.77 -51.93 -0.40 1.67 16
41 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16
42 H 0.07 1.72 2.76 -51.93 -0.14 1.58 16
43 H 0.08 1.90 7.32 -51.93 -0.38 1.52 16
44 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16
45 H 0.12 2.13 8.14 -51.93 -0.42 1.71 16
46 H 0.40 3.60 9.10 45.56 0.41 4.02 16
LS Contribution 381.16 15.07 5.74 5.74
Total: -1.00 -32.59 381.16 -6.43 -39.02
By element:
Atomic # 1 Polarization: 16.08 SS G_CDS: -5.63 Total: 10.44 kcal
Atomic # 6 Polarization: 2.27 SS G_CDS: -1.92 Total: 0.35 kcal
Atomic # 7 Polarization: -34.36 SS G_CDS: 0.52 Total: -33.84 kcal
Atomic # 8 Polarization: -37.78 SS G_CDS: -0.93 Total: -38.71 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -4.21 Total: 17.00 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -32.59 -6.43 -39.02 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001603952263.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -94.639 kcal
(2) G-P(sol) polarization free energy of solvation -32.586 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.224 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal
(6) G-S(sol) free energy of system = (1) + (5) -133.655 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds