Wall clock time and date at job start Tue Mar 31 2020 19:08:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53002 * 109.47385 * 2 1
4 4 O 1.42904 * 109.47188 * 119.99744 * 2 1 3
5 5 C 1.35902 * 116.99359 * 85.22209 * 4 2 1
6 6 C 1.38747 * 120.05913 * 356.31823 * 5 4 2
7 7 C 1.38129 * 119.94524 * 180.02562 * 6 5 4
8 8 C 1.38288 * 120.05312 * 0.02562 * 7 6 5
9 9 C 1.38243 * 120.11107 * 0.02562 * 8 7 6
10 10 C 1.38163 * 120.05997 * 359.97438 * 9 8 7
11 11 C 1.50695 * 120.02918 * 179.97438 * 10 9 8
12 12 C 1.50702 * 109.46904 * 262.23041 * 11 10 9
13 13 O 1.21294 * 120.00258 * 355.70548 * 12 11 10
14 14 N 1.34777 * 119.99784 * 175.69796 * 12 11 10
15 15 C 1.37092 * 120.00520 * 4.86247 * 14 12 11
16 16 H 1.08007 * 119.99608 * 323.98542 * 15 14 12
17 17 C 1.38944 * 120.00405 * 143.98070 * 15 14 12
18 18 N 1.31418 * 120.00273 * 160.91579 * 17 15 14
19 19 Si 1.86799 * 120.00098 * 340.91889 * 17 15 14
20 20 H 1.48500 * 109.47149 * 95.50353 * 19 17 15
21 21 H 1.48502 * 109.47230 * 215.50502 * 19 17 15
22 22 H 1.48498 * 109.46997 * 335.50266 * 19 17 15
23 23 C 1.46505 * 119.99828 * 184.86030 * 14 12 11
24 24 C 1.53000 * 109.47195 * 90.00063 * 23 14 12
25 25 C 1.50697 * 109.47143 * 179.97438 * 24 23 14
26 26 O 1.20822 * 120.00016 * 0.02562 * 25 24 23
27 27 O 1.34232 * 120.00025 * 179.97438 * 25 24 23
28 28 H 1.08996 * 109.47098 * 179.97438 * 1 2 3
29 29 H 1.08995 * 109.47194 * 299.99978 * 1 2 3
30 30 H 1.08997 * 109.46606 * 60.00282 * 1 2 3
31 31 H 1.08998 * 109.47698 * 239.99988 * 2 1 3
32 32 H 1.08998 * 109.47586 * 179.97438 * 3 2 1
33 33 H 1.08997 * 109.47315 * 300.00378 * 3 2 1
34 34 H 1.09006 * 109.46505 * 59.99636 * 3 2 1
35 35 H 1.07997 * 120.03070 * 0.02562 * 6 5 4
36 36 H 1.07993 * 119.97148 * 179.71917 * 7 6 5
37 37 H 1.07997 * 119.94249 * 179.97438 * 8 7 6
38 38 H 1.08007 * 119.96750 * 179.97438 * 9 8 7
39 39 H 1.08994 * 109.47719 * 22.22893 * 11 10 9
40 40 H 1.09002 * 109.47385 * 142.23611 * 11 10 9
41 41 H 0.96994 * 120.00272 * 179.97438 * 18 17 15
42 42 H 1.09000 * 109.47069 * 210.00045 * 23 14 12
43 43 H 1.08998 * 109.47140 * 330.00288 * 23 14 12
44 44 H 1.09000 * 109.47097 * 299.99964 * 24 23 14
45 45 H 1.08998 * 109.46893 * 60.00074 * 24 23 14
46 46 H 0.96699 * 116.99963 * 180.02562 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 8 2.0064 -0.6736 1.1668
5 6 2.1169 -2.0263 1.0963
6 6 1.7023 -2.6989 -0.0442
7 6 1.8152 -4.0738 -0.1132
8 6 2.3405 -4.7800 0.9535
9 6 2.7533 -4.1122 2.0914
10 6 2.6425 -2.7370 2.1653
11 6 3.0921 -2.0098 3.4063
12 6 1.9003 -1.7336 4.2862
13 8 0.7854 -2.0218 3.9054
14 7 2.0734 -1.1664 5.4966
15 6 3.3198 -0.7497 5.8865
16 1 4.1932 -1.3158 5.5980
17 6 3.4596 0.4009 6.6528
18 7 4.5633 0.6051 7.3363
19 14 2.0787 1.6575 6.7115
20 1 1.2306 1.4056 7.9041
21 1 2.6556 3.0234 6.7938
22 1 1.2523 1.5425 5.4831
23 6 0.9293 -0.9952 6.3956
24 6 0.7863 -2.2348 7.2809
25 6 -0.3901 -2.0584 8.2060
26 8 -1.0470 -1.0454 8.1615
27 8 -0.7087 -3.0272 9.0788
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8899
30 1 -0.3632 0.5138 -0.8900
31 1 1.8934 -0.5138 -0.8899
32 1 3.1300 1.4425 0.0005
33 1 1.6767 1.9564 -0.8899
34 1 1.6766 1.9563 0.8900
35 1 1.2916 -2.1480 -0.8774
36 1 1.4884 -4.5982 -0.9989
37 1 2.4276 -5.8550 0.8978
38 1 3.1628 -4.6660 2.9233
39 1 3.8092 -2.6259 3.9487
40 1 3.5622 -1.0674 3.1250
41 1 4.6611 1.4085 7.8709
42 1 1.0878 -0.1175 7.0222
43 1 0.0215 -0.8624 5.8071
44 1 0.6278 -3.1125 6.6542
45 1 1.6941 -2.3677 7.8693
46 1 -1.4717 -2.8687 9.6513
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001603952263.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:08:25
Heat of formation + Delta-G solvation = -154.061476 kcal
Electronic energy + Delta-G solvation = -29940.575661 eV
Core-core repulsion = 25795.148569 eV
Total energy + Delta-G solvation = -4145.427092 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.161 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.58661 -41.30894 -40.39168 -38.55521 -37.33979 -36.88855 -34.43414 -34.16479
-33.47021 -32.38228 -30.78978 -28.58135 -28.16477 -26.95981 -25.85124 -24.26670
-22.74731 -22.16003 -21.60899 -20.88254 -19.43660 -19.07302 -18.47508 -18.18108
-17.91878 -17.07748 -17.04412 -16.83649 -16.35039 -16.26692 -15.89084 -15.60865
-15.49524 -14.90690 -14.89420 -14.47942 -14.34721 -14.25529 -13.96972 -13.80995
-13.61311 -13.49737 -13.23607 -13.11251 -13.06267 -12.81699 -12.74197 -12.66075
-12.62039 -12.23942 -12.09860 -12.04085 -11.82876 -11.69278 -11.65266 -11.42115
-11.16315 -10.55290 -9.87008 -9.65465 -8.94780 -8.53991 -6.14137 0.46441
0.63220 1.08960 1.14418 1.25890 1.35971 1.80041 1.98691 2.12528
2.37973 2.68281 2.90731 3.05655 3.76620 3.79935 3.80226 3.90428
3.93665 4.00375 4.13047 4.25863 4.28147 4.34863 4.41995 4.47655
4.52728 4.63011 4.63855 4.68336 4.74698 4.77915 4.81199 4.83269
4.85473 5.01196 5.18008 5.20975 5.23868 5.37078 5.50074 5.50830
5.60842 5.69390 6.01234 6.06340 6.22482 6.64644 6.91492 6.93379
7.39317 7.75656 8.59712
Molecular weight = 335.16amu
Principal moments of inertia in cm(-1)
A = 0.010401 B = 0.004277 C = 0.003756
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2691.425546 B = 6545.470671 C = 7453.064521
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.067 3.933
3 C -0.147 4.147
4 O -0.331 6.331
5 C 0.128 3.872
6 C -0.219 4.219
7 C -0.085 4.085
8 C -0.161 4.161
9 C -0.085 4.085
10 C -0.119 4.119
11 C -0.066 4.066
12 C 0.493 3.507
13 O -0.605 6.605
14 N -0.479 5.479
15 C -0.333 4.333
16 H 0.103 0.897
17 C 0.041 3.959
18 N -0.889 5.889
19 Si 0.911 3.089
20 H -0.271 1.271
21 H -0.283 1.283
22 H -0.280 1.280
23 C 0.114 3.886
24 C -0.117 4.117
25 C 0.495 3.505
26 O -0.554 6.554
27 O -0.503 6.503
28 H 0.054 0.946
29 H 0.041 0.959
30 H 0.100 0.900
31 H 0.092 0.908
32 H 0.063 0.937
33 H 0.106 0.894
34 H 0.046 0.954
35 H 0.145 0.855
36 H 0.154 0.846
37 H 0.150 0.850
38 H 0.136 0.864
39 H 0.104 0.896
40 H 0.088 0.912
41 H 0.279 0.721
42 H 0.057 0.943
43 H 0.063 0.937
44 H 0.117 0.883
45 H 0.122 0.878
46 H 0.429 0.571
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.651 -7.296 -11.850 14.673
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.012 3.988
3 C -0.204 4.204
4 O -0.246 6.246
5 C 0.083 3.917
6 C -0.237 4.237
7 C -0.103 4.103
8 C -0.179 4.179
9 C -0.103 4.103
10 C -0.120 4.120
11 C -0.105 4.105
12 C 0.284 3.716
13 O -0.489 6.489
14 N -0.201 5.201
15 C -0.461 4.461
16 H 0.121 0.879
17 C -0.164 4.164
18 N -0.526 5.526
19 Si 0.740 3.260
20 H -0.198 1.198
21 H -0.209 1.209
22 H -0.205 1.205
23 C -0.010 4.010
24 C -0.156 4.156
25 C 0.339 3.661
26 O -0.445 6.445
27 O -0.316 6.316
28 H 0.073 0.927
29 H 0.060 0.940
30 H 0.119 0.881
31 H 0.110 0.890
32 H 0.082 0.918
33 H 0.125 0.875
34 H 0.065 0.935
35 H 0.162 0.838
36 H 0.172 0.828
37 H 0.168 0.832
38 H 0.154 0.846
39 H 0.122 0.878
40 H 0.106 0.894
41 H 0.089 0.911
42 H 0.075 0.925
43 H 0.082 0.918
44 H 0.135 0.865
45 H 0.140 0.860
46 H 0.291 0.709
Dipole moment (debyes) X Y Z Total
from point charges -4.880 -6.961 -11.994 14.701
hybrid contribution -1.075 1.284 0.922 1.911
sum -5.955 -5.677 -11.072 13.794
Atomic orbital electron populations
1.22319 0.94968 1.02591 1.03119 1.22710 0.94655 0.94239 0.87213
1.21889 1.02033 0.93023 1.03429 1.86196 1.81024 1.17052 1.40321
1.19042 0.95268 0.82775 0.94645 1.21443 1.07650 0.96510 0.98125
1.21276 0.96797 0.92865 0.99377 1.21305 1.01977 1.01134 0.93489
1.21107 0.98313 0.91807 0.99038 1.19062 1.04520 0.94291 0.94108
1.20145 0.95972 1.01687 0.92696 1.20838 0.90459 0.79345 0.80962
1.90533 1.27045 1.57512 1.73829 1.43803 1.07703 1.55832 1.12734
1.19067 0.83900 1.08571 1.34514 0.87949 1.25581 0.97439 0.97898
0.95472 1.69744 1.28076 1.27968 1.26848 0.86417 0.80547 0.80278
0.78801 1.19845 1.20939 1.20500 1.21265 0.90696 0.96606 0.92418
1.21583 0.95859 1.01230 0.96917 1.23325 0.84297 0.79824 0.78648
1.90697 1.53240 1.31063 1.69501 1.84500 1.52830 1.45799 1.48486
0.92727 0.93976 0.88101 0.89008 0.91789 0.87521 0.93506 0.83758
0.82833 0.83234 0.84577 0.87831 0.89397 0.91062 0.92533 0.91843
0.86453 0.85969 0.70946
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.27 9.20 71.98 0.66 -3.61 16
2 C 0.07 1.76 2.85 30.59 0.09 1.84 16
3 C -0.15 -3.36 9.56 71.98 0.69 -2.68 16
4 O -0.33 -12.06 8.99 -92.45 -0.83 -12.89 16
5 C 0.13 4.45 6.48 22.51 0.15 4.59 16
6 C -0.22 -5.96 8.28 22.37 0.19 -5.77 16
7 C -0.09 -1.98 10.04 22.26 0.22 -1.75 16
8 C -0.16 -3.91 10.04 22.28 0.22 -3.69 16
9 C -0.08 -2.54 9.67 22.25 0.22 -2.32 16
10 C -0.12 -4.30 4.43 -19.77 -0.09 -4.39 16
11 C -0.07 -2.65 4.19 29.10 0.12 -2.52 16
12 C 0.49 23.13 7.62 87.66 0.67 23.79 16
13 O -0.60 -30.71 15.52 -3.07 -0.05 -30.76 16
14 N -0.48 -23.08 2.22 -635.53 -1.41 -24.49 16
15 C -0.33 -17.00 9.21 84.04 0.77 -16.23 16
16 H 0.10 5.32 7.07 -2.91 -0.02 5.30 16
17 C 0.04 2.16 5.37 84.92 0.46 2.61 16
18 N -0.89 -48.55 13.96 21.66 0.30 -48.25 16
19 Si 0.91 44.74 24.75 68.60 1.70 46.44 16
20 H -0.27 -13.25 6.73 99.48 0.67 -12.58 16
21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16
22 H -0.28 -14.46 7.07 99.48 0.70 -13.75 16
23 C 0.11 5.26 3.49 86.38 0.30 5.56 16
24 C -0.12 -4.39 6.14 29.85 0.18 -4.21 16
25 C 0.50 17.15 8.33 71.24 0.59 17.74 16
26 O -0.55 -22.85 16.74 21.98 0.37 -22.48 16
27 O -0.50 -12.63 13.42 -51.44 -0.69 -13.32 16
28 H 0.05 1.42 7.07 -2.39 -0.02 1.41 16
29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16
30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16
31 H 0.09 1.93 6.20 -2.39 -0.01 1.92 16
32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16
34 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16
35 H 0.14 3.16 5.50 -2.91 -0.02 3.15 16
36 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16
37 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16
38 H 0.14 3.60 8.05 -2.91 -0.02 3.58 16
39 H 0.10 3.82 7.47 -2.39 -0.02 3.80 16
40 H 0.09 3.75 7.77 -2.39 -0.02 3.73 16
41 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16
42 H 0.06 2.78 2.76 -2.39 -0.01 2.78 16
43 H 0.06 3.11 7.32 -2.39 -0.02 3.09 16
44 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16
45 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16
46 H 0.43 6.40 9.10 -74.06 -0.67 5.73 16
Total: -1.00 -72.13 381.16 5.13 -67.00
By element:
Atomic # 1 Polarization: 29.48 SS G_CDS: 0.30 Total: 29.78 kcal
Atomic # 6 Polarization: 3.54 SS G_CDS: 5.44 Total: 8.98 kcal
Atomic # 7 Polarization: -71.63 SS G_CDS: -1.11 Total: -72.75 kcal
Atomic # 8 Polarization: -78.25 SS G_CDS: -1.20 Total: -79.45 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 1.70 Total: 46.44 kcal
Total: -72.13 5.13 -67.00 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001603952263.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.059 kcal
(2) G-P(sol) polarization free energy of solvation -72.131 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.190 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) -154.061 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds