Wall clock time and date at job start Tue Mar 31 2020 18:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46973 * 2 1 4 4 N 1.46503 * 109.47266 * 184.97925 * 3 2 1 5 5 C 1.34775 * 120.00200 * 275.64311 * 4 3 2 6 6 O 1.21593 * 119.99768 * 173.97680 * 5 4 3 7 7 C 1.47527 * 120.00086 * 353.98335 * 5 4 3 8 8 C 1.39670 * 120.19558 * 305.03623 * 7 5 4 9 9 C 1.37828 * 119.92058 * 180.02562 * 8 7 5 10 10 C 1.38576 * 120.32335 * 0.02562 * 9 8 7 11 11 C 1.38030 * 120.39953 * 359.97438 * 10 9 8 12 12 C 1.38826 * 120.07420 * 359.97438 * 11 10 9 13 13 O 1.35522 * 120.16508 * 180.02562 * 12 11 10 14 14 C 1.34821 * 116.99403 * 354.65005 * 13 12 11 15 15 H 1.07996 * 119.99938 * 5.03238 * 14 13 12 16 16 C 1.38696 * 119.99643 * 185.03971 * 14 13 12 17 17 N 1.31521 * 119.99930 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00223 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47191 * 90.00499 * 18 16 14 20 20 H 1.48504 * 109.47213 * 210.00653 * 18 16 14 21 21 H 1.48502 * 109.46918 * 330.00032 * 18 16 14 22 22 C 1.46501 * 119.99675 * 95.64169 * 4 3 2 23 23 H 1.08999 * 109.47256 * 185.20946 * 22 4 3 24 24 C 1.53003 * 109.47250 * 305.20660 * 22 4 3 25 25 C 1.50694 * 109.47272 * 65.20523 * 22 4 3 26 26 O 1.20828 * 119.99865 * 3.77291 * 25 22 4 27 27 O 1.34231 * 120.00104 * 183.76943 * 25 22 4 28 28 C 1.45204 * 116.99967 * 180.02562 * 27 25 22 29 29 H 1.09000 * 109.47085 * 59.99923 * 1 2 3 30 30 H 1.09004 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47275 * 299.99862 * 1 2 3 32 32 H 1.09001 * 109.47275 * 240.00138 * 2 1 3 33 33 H 1.09000 * 109.47085 * 120.00077 * 2 1 3 34 34 H 1.09003 * 109.47037 * 64.98506 * 3 2 1 35 35 H 1.08995 * 109.47514 * 304.98468 * 3 2 1 36 36 H 1.08002 * 120.03912 * 0.02562 * 8 7 5 37 37 H 1.08001 * 119.83523 * 180.02562 * 9 8 7 38 38 H 1.07995 * 119.79656 * 180.27514 * 10 9 8 39 39 H 1.07999 * 119.95896 * 180.02562 * 11 10 9 40 40 H 0.96998 * 119.99941 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47160 * 59.99622 * 24 22 4 42 42 H 1.08997 * 109.47278 * 180.02562 * 24 22 4 43 43 H 1.09002 * 109.46775 * 299.99905 * 24 22 4 44 44 H 1.08997 * 109.46759 * 299.99687 * 28 27 25 45 45 H 1.09000 * 109.47289 * 59.99657 * 28 27 25 46 46 H 1.08997 * 109.47050 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5001 1.4443 -0.1199 5 6 4.2666 1.2968 0.9788 6 8 5.4727 1.1883 0.8685 7 6 3.6425 1.2668 2.3152 8 6 2.8150 2.3137 2.7277 9 6 2.2352 2.2801 3.9776 10 6 2.4693 1.2121 4.8290 11 6 3.2848 0.1704 4.4349 12 6 3.8764 0.1868 3.1792 13 8 4.6770 -0.8352 2.7902 14 6 4.9483 -1.7838 3.7090 15 1 4.4690 -1.7516 4.6762 16 6 5.8432 -2.8010 3.4120 17 7 6.1076 -3.7267 4.3080 18 14 6.6719 -2.8570 1.7388 19 1 7.9431 -2.0912 1.7901 20 1 6.9583 -4.2681 1.3752 21 1 5.7728 -2.2564 0.7208 22 6 4.1269 1.6064 -1.4341 23 1 5.2064 1.4901 -1.3386 24 6 3.5826 0.5457 -2.3931 25 6 3.8151 2.9785 -1.9735 26 8 3.1967 3.7669 -1.2983 27 8 4.2245 3.3249 -3.2040 28 6 3.8892 4.6627 -3.6581 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.7513 1.9298 0.9313 35 1 1.6056 1.9814 -0.8419 36 1 2.6297 3.1485 2.0680 37 1 1.5953 3.0901 4.2950 38 1 2.0071 1.1923 5.8048 39 1 3.4621 -0.6586 5.1040 40 1 6.7332 -4.4383 4.1002 41 1 2.5030 0.6618 -2.4886 42 1 4.0493 0.6660 -3.3707 43 1 3.8081 -0.4468 -2.0029 44 1 2.8059 4.7830 -3.6652 45 1 4.3319 5.3966 -2.9847 46 1 4.2783 4.8128 -4.6651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650245637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:54 Heat of formation + Delta-G solvation = -132.478084 kcal Electronic energy + Delta-G solvation = -30625.963892 eV Core-core repulsion = 26481.472726 eV Total energy + Delta-G solvation = -4144.491166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.18527 -41.32187 -40.17502 -38.24157 -37.94281 -37.19959 -34.55420 -34.49608 -33.01806 -31.40079 -30.86995 -28.66998 -27.40197 -27.35618 -25.87929 -24.41545 -23.25564 -22.69731 -22.09031 -20.68461 -19.92819 -19.18067 -18.71205 -18.22624 -18.06975 -17.45735 -17.08491 -16.80586 -16.17828 -15.83487 -15.78719 -15.70296 -15.41042 -15.23793 -14.86597 -14.70696 -14.43119 -14.34035 -14.20264 -14.12622 -13.65445 -13.55085 -13.25416 -13.06516 -12.98939 -12.94753 -12.78602 -12.59487 -12.48777 -12.38308 -12.18434 -12.10315 -11.84742 -11.68719 -11.57984 -11.51952 -10.98278 -10.91123 -10.04676 -9.75001 -9.18882 -8.57604 -6.27721 0.12438 0.60017 0.98583 1.20950 1.28749 1.30504 1.44659 1.55003 2.08980 2.22018 2.70202 2.91173 3.08482 3.40639 3.64276 3.81743 3.89832 3.98471 4.02603 4.11996 4.22570 4.28065 4.32183 4.38426 4.44020 4.47788 4.52149 4.61940 4.66355 4.68798 4.72216 4.77687 4.92542 5.02564 5.04340 5.13479 5.21867 5.23605 5.28428 5.37444 5.45716 5.47562 5.59673 5.67012 5.82331 6.11933 6.14468 6.56541 6.78014 7.00310 7.52640 8.53369 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011142 B = 0.004680 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.403567 B = 5981.868646 C = 7076.701905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.146 4.146 3 C 0.112 3.888 4 N -0.591 5.591 5 C 0.578 3.422 6 O -0.574 6.574 7 C -0.216 4.216 8 C -0.040 4.040 9 C -0.179 4.179 10 C -0.045 4.045 11 C -0.238 4.238 12 C 0.163 3.837 13 O -0.231 6.231 14 C -0.398 4.398 15 H 0.094 0.906 16 C 0.025 3.975 17 N -0.911 5.911 18 Si 0.955 3.045 19 H -0.279 1.279 20 H -0.258 1.258 21 H -0.273 1.273 22 C 0.138 3.862 23 H 0.119 0.881 24 C -0.148 4.148 25 C 0.461 3.539 26 O -0.518 6.518 27 O -0.356 6.356 28 C 0.028 3.972 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.119 0.881 40 H 0.286 0.714 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 14.270 -15.012 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.185 4.185 3 C -0.009 4.009 4 N -0.323 5.323 5 C 0.369 3.631 6 O -0.453 6.453 7 C -0.220 4.220 8 C -0.058 4.058 9 C -0.197 4.197 10 C -0.063 4.063 11 C -0.258 4.258 12 C 0.111 3.889 13 O -0.137 6.137 14 C -0.474 4.474 15 H 0.111 0.889 16 C -0.175 4.175 17 N -0.551 5.551 18 Si 0.779 3.221 19 H -0.204 1.204 20 H -0.182 1.182 21 H -0.198 1.198 22 C 0.033 3.967 23 H 0.136 0.864 24 C -0.205 4.205 25 C 0.303 3.697 26 O -0.406 6.406 27 O -0.271 6.271 28 C -0.065 4.065 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.172 0.828 39 H 0.137 0.863 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.110 14.230 -15.073 24.008 hybrid contribution 0.890 -0.380 0.068 0.970 sum -11.220 13.851 -15.006 23.300 Atomic orbital electron populations 1.21630 0.92756 1.02475 1.02847 1.22045 0.98128 0.96416 1.01867 1.21939 0.76815 0.97501 1.04653 1.47701 1.08121 1.71841 1.04667 1.18505 0.85734 0.73762 0.85115 1.90720 1.16554 1.50735 1.87322 1.18929 1.09909 0.98401 0.94776 1.21096 0.92308 0.95217 0.97224 1.21163 1.04390 1.00489 0.93648 1.21401 0.93466 0.91403 1.00064 1.21320 1.04765 1.03050 0.96622 1.19449 0.89596 0.86821 0.93031 1.83564 1.59830 1.30630 1.39661 1.20792 1.26692 1.03561 0.96343 0.88911 1.25023 0.96385 0.94342 1.01717 1.69674 1.35634 1.14156 1.35637 0.85447 0.79003 0.77689 0.79939 1.20442 1.18249 1.19757 1.20654 1.01615 0.90267 0.84195 0.86369 1.22147 1.02998 0.96628 0.98767 1.24071 0.75615 0.89986 0.80034 1.90635 1.38378 1.52750 1.58858 1.86501 1.72325 1.36666 1.31603 1.23603 1.02254 0.78891 1.01732 0.90754 0.92246 0.92158 0.91098 0.94670 0.89048 0.88611 0.83620 0.81824 0.82849 0.86278 0.90415 0.89780 0.87674 0.91536 0.91214 0.92454 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.15 -3.77 6.01 30.59 0.18 -3.59 16 3 C 0.11 2.90 3.83 86.38 0.33 3.23 16 4 N -0.59 -19.35 2.08 -805.76 -1.68 -21.02 16 5 C 0.58 24.67 6.74 86.69 0.58 25.25 16 6 O -0.57 -29.40 16.14 -1.99 -0.03 -29.44 16 7 C -0.22 -8.91 4.86 -19.99 -0.10 -9.01 16 8 C -0.04 -1.26 7.60 22.52 0.17 -1.09 16 9 C -0.18 -4.81 10.03 22.25 0.22 -4.58 16 10 C -0.05 -1.40 10.03 22.30 0.22 -1.18 16 11 C -0.24 -10.07 9.16 22.36 0.20 -9.86 16 12 C 0.16 7.83 6.65 22.91 0.15 7.98 16 13 O -0.23 -13.18 7.82 -18.13 -0.14 -13.32 16 14 C -0.40 -23.83 9.95 67.93 0.68 -23.16 16 15 H 0.09 5.63 5.44 -2.91 -0.02 5.62 16 16 C 0.03 1.51 5.49 84.85 0.47 1.98 16 17 N -0.91 -54.83 13.96 21.62 0.30 -54.53 16 18 Si 0.96 49.21 28.62 68.60 1.96 51.17 16 19 H -0.28 -14.51 7.11 99.48 0.71 -13.80 16 20 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.27 -14.52 7.11 99.48 0.71 -13.81 16 22 C 0.14 3.89 3.14 44.24 0.14 4.03 16 23 H 0.12 3.82 6.91 -2.39 -0.02 3.81 16 24 C -0.15 -3.07 7.92 71.98 0.57 -2.50 16 25 C 0.46 11.81 6.95 71.23 0.50 12.30 16 26 O -0.52 -15.09 15.00 21.96 0.33 -14.76 16 27 O -0.36 -7.29 10.35 -51.43 -0.53 -7.82 16 28 C 0.03 0.38 10.56 113.37 1.20 1.58 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.74 6.00 -2.39 -0.01 1.73 16 33 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 34 H 0.09 2.36 4.56 -2.39 -0.01 2.35 16 35 H 0.10 2.07 6.81 -2.39 -0.02 2.06 16 36 H 0.15 3.89 7.38 -2.91 -0.02 3.87 16 37 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 40 H 0.29 15.84 8.31 -92.71 -0.77 15.07 16 41 H 0.08 1.44 6.70 -2.39 -0.02 1.43 16 42 H 0.10 1.68 8.05 -2.39 -0.02 1.66 16 43 H 0.07 1.60 7.88 -2.39 -0.02 1.58 16 44 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 45 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 46 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -78.54 380.75 7.45 -71.09 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 1.00 Total: 19.17 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 6.23 Total: -0.55 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -1.37 Total: -75.55 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: -0.38 Total: -65.33 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.96 Total: 51.17 kcal Total: -78.54 7.45 -71.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650245637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.385 kcal (2) G-P(sol) polarization free energy of solvation -78.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds