Wall clock time and date at job start Tue Mar 31 2020 19:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46896 * 2 1 4 4 O 1.45202 * 109.47129 * 119.99957 * 2 1 3 5 5 C 1.34218 * 117.00322 * 90.00066 * 4 2 1 6 6 O 1.20833 * 119.99739 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00501 * 180.02562 * 5 4 2 8 8 C 1.52999 * 109.47317 * 205.00102 * 7 5 4 9 9 C 1.52998 * 109.47000 * 84.99561 * 7 5 4 10 10 N 1.46499 * 109.46912 * 324.99943 * 7 5 4 11 11 C 1.34776 * 120.00532 * 179.97438 * 10 7 5 12 12 O 1.21596 * 119.99483 * 0.02562 * 11 10 7 13 13 C 1.47529 * 120.00576 * 179.97438 * 11 10 7 14 14 C 1.39668 * 120.19410 * 0.02562 * 13 11 10 15 15 C 1.37835 * 119.91853 * 179.97438 * 14 13 11 16 16 C 1.38573 * 120.31903 * 0.02562 * 15 14 13 17 17 C 1.38022 * 120.40696 * 0.02562 * 16 15 14 18 18 C 1.38831 * 120.06839 * 359.95623 * 17 16 15 19 19 O 1.35527 * 120.16025 * 180.02562 * 18 17 16 20 20 C 1.34817 * 116.99627 * 354.39561 * 19 18 17 21 21 H 1.07998 * 120.00286 * 5.06815 * 20 19 18 22 22 C 1.38705 * 119.99676 * 185.06799 * 20 19 18 23 23 N 1.31514 * 119.99991 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99619 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47501 * 60.00015 * 24 22 20 26 26 H 1.48510 * 109.46856 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47250 * 299.99489 * 24 22 20 28 28 H 1.09002 * 109.47126 * 60.00282 * 1 2 3 29 29 H 1.08998 * 109.46773 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47076 * 300.00279 * 1 2 3 31 31 H 1.08996 * 109.47076 * 239.99721 * 2 1 3 32 32 H 1.08999 * 109.46747 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47003 * 299.99793 * 3 2 1 34 34 H 1.08996 * 109.47486 * 59.99972 * 3 2 1 35 35 H 1.09000 * 109.47286 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.46975 * 299.99772 * 8 7 5 37 37 H 1.09003 * 109.46921 * 59.99864 * 8 7 5 38 38 H 1.08991 * 109.47344 * 300.00210 * 9 7 5 39 39 H 1.09004 * 109.46805 * 60.01165 * 9 7 5 40 40 H 1.09000 * 109.46843 * 180.02562 * 9 7 5 41 41 H 0.97003 * 120.00039 * 0.02562 * 10 7 5 42 42 H 1.07997 * 120.04248 * 0.26955 * 14 13 11 43 43 H 1.07992 * 119.83718 * 179.97438 * 15 14 13 44 44 H 1.08000 * 119.79251 * 179.97438 * 16 15 14 45 45 H 1.07996 * 119.96390 * 179.97438 * 17 16 15 46 46 H 0.96997 * 120.00153 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 -2.0074 1.0852 6 8 1.9974 -2.5749 0.0413 7 6 2.7183 -2.7853 2.2747 8 6 3.4402 -4.0452 1.7928 9 6 1.5350 -3.1823 3.1597 10 7 3.6472 -1.9547 3.0451 11 6 4.2241 -2.4453 4.1600 12 8 3.9740 -3.5776 4.5261 13 6 5.1600 -1.6092 4.9355 14 6 5.4507 -0.3083 4.5184 15 6 6.3255 0.4681 5.2476 16 6 6.9195 -0.0357 6.3937 17 6 6.6427 -1.3197 6.8174 18 6 5.7637 -2.1160 6.0957 19 8 5.4901 -3.3770 6.5103 20 6 6.1911 -3.8401 7.5647 21 1 6.8721 -3.1866 8.0896 22 6 6.0378 -5.1561 7.9753 23 7 5.2082 -5.9519 7.3364 24 14 7.0085 -5.7977 9.4366 25 1 6.6684 -5.0032 10.6441 26 1 6.6674 -7.2241 9.6696 27 1 8.4619 -5.6761 9.1572 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.8030 -4.6076 2.6532 36 1 2.7491 -4.6631 1.2197 37 1 4.2832 -3.7623 1.1624 38 1 1.0208 -2.2847 3.5029 39 1 0.8439 -3.8003 2.5864 40 1 1.8975 -3.7445 4.0202 41 1 3.8465 -1.0514 2.7533 42 1 4.9869 0.0904 3.6283 43 1 6.5496 1.4737 4.9237 44 1 7.6040 0.5800 6.9583 45 1 7.1100 -1.7053 7.7114 46 1 5.1012 -6.8722 7.6232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650249033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:33 Heat of formation + Delta-G solvation = -121.235085 kcal Electronic energy + Delta-G solvation = -29742.766652 eV Core-core repulsion = 25598.763019 eV Total energy + Delta-G solvation = -4144.003633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02788 -39.64574 -38.40670 -37.10913 -36.36913 -35.13525 -33.27843 -32.35527 -31.84088 -29.70664 -28.91721 -27.60312 -27.13508 -25.43319 -24.96757 -23.17556 -21.72887 -21.31764 -20.33201 -19.43594 -18.50570 -17.94112 -17.51535 -16.55449 -16.24338 -15.87171 -15.10144 -14.72132 -14.48037 -14.42353 -14.31762 -14.02891 -13.92940 -13.70657 -13.66318 -13.36504 -12.90822 -12.76719 -12.65673 -12.56401 -12.51416 -12.05461 -12.00569 -11.85181 -11.72548 -11.68920 -11.36627 -11.20764 -11.11865 -11.09664 -10.88375 -10.82509 -10.76601 -10.49504 -10.44004 -9.55953 -8.88543 -8.76953 -8.70839 -8.28909 -7.32406 -6.45860 -4.05460 1.69215 2.00957 2.31282 2.43522 3.11315 3.13204 3.15583 3.49687 3.68948 3.92678 4.44637 4.50249 4.60384 4.61824 4.83861 4.95921 5.04373 5.09032 5.17055 5.22059 5.41044 5.42514 5.45074 5.49965 5.51660 5.69876 5.74045 5.78210 5.84283 5.85786 5.93470 6.03738 6.07650 6.11171 6.26465 6.47532 6.53760 6.56494 6.66721 6.80993 6.90658 7.05242 7.22428 7.27975 7.60764 7.68197 7.90129 8.05359 8.93790 9.02372 9.65560 10.67759 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.003292 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.758643 B = 8502.770001 C = 9944.912692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 C -0.150 4.150 4 O -0.349 6.349 5 C 0.469 3.531 6 O -0.499 6.499 7 C 0.200 3.800 8 C -0.156 4.156 9 C -0.164 4.164 10 N -0.735 5.735 11 C 0.562 3.438 12 O -0.494 6.494 13 C -0.227 4.227 14 C -0.037 4.037 15 C -0.230 4.230 16 C -0.050 4.050 17 C -0.238 4.238 18 C 0.191 3.809 19 O -0.123 6.123 20 C -0.404 4.404 21 H 0.093 0.907 22 C 0.046 3.954 23 N -0.832 5.832 24 Si 0.940 3.060 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.399 0.601 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.132 0.868 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.116 12.686 -11.183 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 C -0.207 4.207 4 O -0.266 6.266 5 C 0.310 3.690 6 O -0.385 6.385 7 C 0.112 3.888 8 C -0.214 4.214 9 C -0.222 4.222 10 N -0.394 5.394 11 C 0.352 3.648 12 O -0.368 6.368 13 C -0.232 4.232 14 C -0.056 4.056 15 C -0.249 4.249 16 C -0.069 4.069 17 C -0.257 4.257 18 C 0.131 3.869 19 O -0.021 6.021 20 C -0.480 4.480 21 H 0.110 0.890 22 C -0.162 4.162 23 N -0.463 5.463 24 Si 0.764 3.236 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.235 0.765 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.149 0.851 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.657 11.206 -11.312 16.898 hybrid contribution 0.556 0.365 0.385 0.769 sum -5.100 11.572 -10.927 16.713 Atomic orbital electron populations 1.22208 0.94273 1.03129 1.03112 1.22770 0.94702 0.93182 0.87052 1.21899 1.02270 0.93331 1.03231 1.86594 1.76634 1.22194 1.41154 1.23913 0.74180 0.81233 0.89634 1.90648 1.48092 1.69961 1.29798 1.20100 0.91618 0.90252 0.86850 1.22197 1.00295 0.95546 1.03350 1.22270 0.95622 1.02800 1.01504 1.45970 1.47740 1.17739 1.27974 1.18171 0.80235 0.86983 0.79390 1.90885 1.60565 1.17825 1.67486 1.18770 1.08885 0.96232 0.99343 1.20782 0.95443 0.92005 0.97352 1.20460 1.04833 1.00266 0.99380 1.20902 0.96463 0.94441 0.95050 1.21156 1.05233 0.95498 1.03840 1.19244 0.90792 0.86373 0.90484 1.84164 1.52813 1.21911 1.43177 1.21440 1.23487 0.96160 1.06873 0.88961 1.25357 0.97015 0.94915 0.98904 1.70101 1.31877 1.06424 1.37916 0.85815 0.79483 0.78311 0.80027 1.19387 1.20168 1.19392 0.90743 0.91958 0.91363 0.89770 0.91503 0.90435 0.91157 0.87958 0.90981 0.92346 0.91828 0.91559 0.87594 0.76535 0.87031 0.87279 0.87201 0.85078 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.55 37.16 0.35 -1.08 16 2 C 0.08 0.75 3.18 -26.73 -0.09 0.66 16 3 C -0.15 -1.06 9.57 37.16 0.36 -0.71 16 4 O -0.35 -4.27 9.09 -39.23 -0.36 -4.63 16 5 C 0.47 6.66 6.72 36.01 0.24 6.90 16 6 O -0.50 -7.82 15.32 -18.76 -0.29 -8.11 16 7 C 0.20 3.10 1.01 -132.97 -0.13 2.96 16 8 C -0.16 -2.54 7.93 37.16 0.29 -2.24 16 9 C -0.16 -2.53 8.38 37.16 0.31 -2.21 16 10 N -0.74 -11.96 4.99 -49.72 -0.25 -12.20 16 11 C 0.56 11.72 7.18 -12.47 -0.09 11.63 16 12 O -0.49 -12.35 11.37 -16.57 -0.19 -12.54 16 13 C -0.23 -4.78 5.89 -104.81 -0.62 -5.40 16 14 C -0.04 -0.62 9.54 -39.20 -0.37 -0.99 16 15 C -0.23 -3.69 10.03 -39.61 -0.40 -4.08 16 16 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 17 C -0.24 -4.99 9.16 -39.44 -0.36 -5.35 16 18 C 0.19 4.59 6.66 -38.60 -0.26 4.33 16 19 O -0.12 -3.50 7.84 -21.08 -0.17 -3.66 16 20 C -0.40 -11.15 9.49 30.90 0.29 -10.86 16 21 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 22 C 0.05 1.26 5.49 -17.51 -0.10 1.16 16 23 N -0.83 -24.44 13.67 55.48 0.76 -23.68 16 24 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.87 7.16 -51.93 -0.37 0.50 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 1.96 6.16 -51.93 -0.32 1.64 16 36 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.11 1.97 6.16 -51.93 -0.32 1.65 16 41 H 0.40 5.52 5.94 -40.82 -0.24 5.28 16 42 H 0.11 1.48 6.40 -52.49 -0.34 1.14 16 43 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -32.83 381.20 -7.08 -39.91 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.35 Total: 10.55 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -0.96 Total: -6.52 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.51 Total: -35.89 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -1.00 Total: -28.95 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.83 -7.08 -39.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650249033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.329 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds