Wall clock time and date at job start Tue Mar 31 2020 19:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46896 * 2 1 4 4 O 1.45202 * 109.47129 * 119.99957 * 2 1 3 5 5 C 1.34218 * 117.00322 * 90.00066 * 4 2 1 6 6 O 1.20833 * 119.99739 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00501 * 180.02562 * 5 4 2 8 8 C 1.52999 * 109.47317 * 205.00102 * 7 5 4 9 9 C 1.52998 * 109.47000 * 84.99561 * 7 5 4 10 10 N 1.46499 * 109.46912 * 324.99943 * 7 5 4 11 11 C 1.34776 * 120.00532 * 179.97438 * 10 7 5 12 12 O 1.21596 * 119.99483 * 0.02562 * 11 10 7 13 13 C 1.47529 * 120.00576 * 179.97438 * 11 10 7 14 14 C 1.39668 * 120.19410 * 0.02562 * 13 11 10 15 15 C 1.37835 * 119.91853 * 179.97438 * 14 13 11 16 16 C 1.38573 * 120.31903 * 0.02562 * 15 14 13 17 17 C 1.38022 * 120.40696 * 0.02562 * 16 15 14 18 18 C 1.38831 * 120.06839 * 359.95623 * 17 16 15 19 19 O 1.35527 * 120.16025 * 180.02562 * 18 17 16 20 20 C 1.34817 * 116.99627 * 354.39561 * 19 18 17 21 21 H 1.07998 * 120.00286 * 5.06815 * 20 19 18 22 22 C 1.38705 * 119.99676 * 185.06799 * 20 19 18 23 23 N 1.31514 * 119.99991 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99619 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47501 * 60.00015 * 24 22 20 26 26 H 1.48510 * 109.46856 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47250 * 299.99489 * 24 22 20 28 28 H 1.09002 * 109.47126 * 60.00282 * 1 2 3 29 29 H 1.08998 * 109.46773 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47076 * 300.00279 * 1 2 3 31 31 H 1.08996 * 109.47076 * 239.99721 * 2 1 3 32 32 H 1.08999 * 109.46747 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47003 * 299.99793 * 3 2 1 34 34 H 1.08996 * 109.47486 * 59.99972 * 3 2 1 35 35 H 1.09000 * 109.47286 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.46975 * 299.99772 * 8 7 5 37 37 H 1.09003 * 109.46921 * 59.99864 * 8 7 5 38 38 H 1.08991 * 109.47344 * 300.00210 * 9 7 5 39 39 H 1.09004 * 109.46805 * 60.01165 * 9 7 5 40 40 H 1.09000 * 109.46843 * 180.02562 * 9 7 5 41 41 H 0.97003 * 120.00039 * 0.02562 * 10 7 5 42 42 H 1.07997 * 120.04248 * 0.26955 * 14 13 11 43 43 H 1.07992 * 119.83718 * 179.97438 * 15 14 13 44 44 H 1.08000 * 119.79251 * 179.97438 * 16 15 14 45 45 H 1.07996 * 119.96390 * 179.97438 * 17 16 15 46 46 H 0.96997 * 120.00153 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 -2.0074 1.0852 6 8 1.9974 -2.5749 0.0413 7 6 2.7183 -2.7853 2.2747 8 6 3.4402 -4.0452 1.7928 9 6 1.5350 -3.1823 3.1597 10 7 3.6472 -1.9547 3.0451 11 6 4.2241 -2.4453 4.1600 12 8 3.9740 -3.5776 4.5261 13 6 5.1600 -1.6092 4.9355 14 6 5.4507 -0.3083 4.5184 15 6 6.3255 0.4681 5.2476 16 6 6.9195 -0.0357 6.3937 17 6 6.6427 -1.3197 6.8174 18 6 5.7637 -2.1160 6.0957 19 8 5.4901 -3.3770 6.5103 20 6 6.1911 -3.8401 7.5647 21 1 6.8721 -3.1866 8.0896 22 6 6.0378 -5.1561 7.9753 23 7 5.2082 -5.9519 7.3364 24 14 7.0085 -5.7977 9.4366 25 1 6.6684 -5.0032 10.6441 26 1 6.6674 -7.2241 9.6696 27 1 8.4619 -5.6761 9.1572 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.8030 -4.6076 2.6532 36 1 2.7491 -4.6631 1.2197 37 1 4.2832 -3.7623 1.1624 38 1 1.0208 -2.2847 3.5029 39 1 0.8439 -3.8003 2.5864 40 1 1.8975 -3.7445 4.0202 41 1 3.8465 -1.0514 2.7533 42 1 4.9869 0.0904 3.6283 43 1 6.5496 1.4737 4.9237 44 1 7.6040 0.5800 6.9583 45 1 7.1100 -1.7053 7.7114 46 1 5.1012 -6.8722 7.6232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650249033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:32 Heat of formation + Delta-G solvation = -141.675477 kcal Electronic energy + Delta-G solvation = -29743.653014 eV Core-core repulsion = 25598.763019 eV Total energy + Delta-G solvation = -4144.889995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21929 -41.19413 -39.98640 -38.22415 -37.98368 -36.61952 -34.29394 -34.04928 -33.35532 -31.18720 -30.52504 -28.49413 -28.16580 -27.34941 -26.21059 -24.64728 -23.20915 -22.37233 -21.60448 -20.83744 -19.96246 -19.66218 -18.85072 -18.05192 -17.40393 -17.14552 -16.52590 -16.22453 -16.05579 -15.92005 -15.75108 -15.34091 -15.24091 -15.13357 -14.84253 -14.56452 -14.47064 -14.20059 -13.90883 -13.67011 -13.52286 -13.22709 -13.18578 -13.12780 -13.06729 -12.90337 -12.72145 -12.62851 -12.52774 -12.41696 -12.33980 -12.13807 -11.92183 -11.72797 -11.53790 -11.34600 -10.79067 -10.42799 -10.22859 -9.79099 -9.00561 -8.41352 -6.11404 0.14678 0.76175 0.84102 1.34538 1.38469 1.46696 1.51361 2.06955 2.11859 2.18099 2.90683 3.25169 3.37173 3.49126 3.69062 3.78865 3.81830 3.95264 3.96441 4.10545 4.15029 4.30297 4.48036 4.54045 4.55297 4.62589 4.65435 4.67378 4.70576 4.76004 4.81918 4.88297 5.00456 5.06632 5.10724 5.15383 5.15649 5.16479 5.24166 5.38183 5.40823 5.51679 5.63415 5.72940 5.98893 6.19368 6.49099 6.63256 6.98338 7.45392 7.83036 8.78330 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.003292 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.758643 B = 8502.770001 C = 9944.912692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.068 3.932 3 C -0.145 4.145 4 O -0.347 6.347 5 C 0.482 3.518 6 O -0.513 6.513 7 C 0.195 3.805 8 C -0.151 4.151 9 C -0.159 4.159 10 N -0.713 5.713 11 C 0.559 3.441 12 O -0.543 6.543 13 C -0.243 4.243 14 C -0.031 4.031 15 C -0.201 4.201 16 C -0.040 4.040 17 C -0.258 4.258 18 C 0.154 3.846 19 O -0.184 6.184 20 C -0.427 4.427 21 H 0.105 0.895 22 C -0.019 4.019 23 N -0.901 5.901 24 Si 1.017 2.983 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.256 1.256 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.413 0.587 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.153 0.847 45 H 0.123 0.877 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 17.520 -12.556 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 C -0.202 4.202 4 O -0.263 6.263 5 C 0.324 3.676 6 O -0.400 6.400 7 C 0.108 3.892 8 C -0.209 4.209 9 C -0.217 4.217 10 N -0.372 5.372 11 C 0.349 3.651 12 O -0.420 6.420 13 C -0.248 4.248 14 C -0.049 4.049 15 C -0.219 4.219 16 C -0.058 4.058 17 C -0.278 4.278 18 C 0.098 3.902 19 O -0.087 6.087 20 C -0.503 4.503 21 H 0.122 0.878 22 C -0.218 4.218 23 N -0.537 5.537 24 Si 0.836 3.164 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.180 1.180 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.252 0.748 42 H 0.173 0.827 43 H 0.180 0.820 44 H 0.170 0.830 45 H 0.141 0.859 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.900 16.163 -12.727 21.148 hybrid contribution 0.306 -0.660 0.537 0.904 sum -4.594 15.504 -12.190 20.250 Atomic orbital electron populations 1.22228 0.93343 1.02420 1.04588 1.23161 0.95591 0.94274 0.85562 1.21932 1.02384 0.91317 1.04594 1.86571 1.76325 1.20747 1.42691 1.23287 0.73932 0.81936 0.88426 1.90651 1.48842 1.70503 1.30042 1.20082 0.91333 0.90285 0.87509 1.22079 1.00866 0.95978 1.01970 1.22170 0.95911 1.03178 1.00432 1.45679 1.46787 1.18241 1.26452 1.18362 0.80222 0.86378 0.80145 1.90896 1.62126 1.20065 1.68934 1.19215 1.08723 0.98125 0.98752 1.21290 0.95112 0.89898 0.98605 1.21151 1.01576 1.01882 0.97292 1.21422 0.96062 0.92847 0.95452 1.21303 1.05386 0.97189 1.03876 1.20007 0.92216 0.85872 0.92074 1.84167 1.55340 1.24361 1.44792 1.21950 1.23999 0.96943 1.07368 0.87756 1.26652 0.98105 0.94899 1.02164 1.70291 1.35464 1.06800 1.41114 0.84685 0.78108 0.77526 0.76072 1.17896 1.19927 1.18013 0.88343 0.93749 0.90856 0.90505 0.91355 0.88134 0.90724 0.91550 0.89753 0.91793 0.90545 0.89800 0.91299 0.74784 0.82672 0.82001 0.82982 0.85912 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.55 71.98 0.69 -1.71 16 2 C 0.07 1.12 3.18 30.60 0.10 1.21 16 3 C -0.15 -1.48 9.57 71.98 0.69 -0.79 16 4 O -0.35 -7.61 9.09 -51.30 -0.47 -8.08 16 5 C 0.48 13.02 6.72 71.24 0.48 13.50 16 6 O -0.51 -15.44 15.32 21.94 0.34 -15.11 16 7 C 0.20 6.09 1.01 2.86 0.00 6.09 16 8 C -0.15 -5.11 7.93 71.98 0.57 -4.54 16 9 C -0.16 -5.05 8.38 71.98 0.60 -4.45 16 10 N -0.71 -22.81 4.99 -429.47 -2.14 -24.96 16 11 C 0.56 24.13 7.18 86.69 0.62 24.75 16 12 O -0.54 -29.50 11.37 16.88 0.19 -29.30 16 13 C -0.24 -10.22 5.89 -19.99 -0.12 -10.34 16 14 C -0.03 -0.91 9.54 22.52 0.21 -0.69 16 15 C -0.20 -5.22 10.03 22.25 0.22 -5.00 16 16 C -0.04 -1.20 10.03 22.30 0.22 -0.98 16 17 C -0.26 -10.76 9.16 22.36 0.20 -10.55 16 18 C 0.15 7.67 6.66 22.91 0.15 7.83 16 19 O -0.18 -11.36 7.84 0.74 0.01 -11.35 16 20 C -0.43 -25.25 9.49 67.93 0.64 -24.61 16 21 H 0.11 5.55 5.21 -2.91 -0.02 5.53 16 22 C -0.02 -1.08 5.49 84.85 0.47 -0.61 16 23 N -0.90 -57.65 13.67 21.62 0.30 -57.35 16 24 Si 1.02 43.62 29.55 68.60 2.03 45.64 16 25 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 27 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.41 7.16 -2.39 -0.02 1.39 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 2.78 6.16 -2.39 -0.01 2.76 16 36 H 0.08 2.59 7.87 -2.39 -0.02 2.57 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.07 2.77 6.16 -2.39 -0.01 2.76 16 41 H 0.41 10.36 5.94 -92.71 -0.55 9.81 16 42 H 0.16 3.19 6.40 -2.91 -0.02 3.17 16 43 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 44 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 45 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 46 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -82.15 381.20 6.47 -75.68 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.46 Total: 35.72 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 5.76 Total: -10.90 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -1.85 Total: -82.31 kcal Atomic # 8 Polarization: -63.90 SS G_CDS: 0.07 Total: -63.84 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -82.15 6.47 -75.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650249033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.999 kcal (2) G-P(sol) polarization free energy of solvation -82.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds