Wall clock time and date at job start Tue Mar 31 2020 19:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47398 * 2 1 4 4 O 1.21280 * 120.00052 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99946 * 179.97438 * 3 2 1 6 6 C 1.46927 * 120.63090 * 0.02562 * 5 3 2 7 7 C 1.53195 * 108.77362 * 126.36838 * 6 5 3 8 8 C 1.53043 * 109.31250 * 54.63506 * 7 6 5 9 9 C 1.53040 * 109.53833 * 298.63225 * 8 7 6 10 10 H 1.08997 * 109.52268 * 301.39587 * 9 8 7 11 11 C 1.50698 * 109.49643 * 181.31784 * 9 8 7 12 12 O 1.20831 * 119.99872 * 0.16005 * 11 9 8 13 13 O 1.34225 * 119.99945 * 180.16472 * 11 9 8 14 14 C 1.45203 * 117.00023 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.47204 * 30.00172 * 14 13 11 16 16 C 1.50696 * 109.47351 * 270.00042 * 14 13 11 17 17 H 1.08003 * 120.00110 * 120.00159 * 16 14 13 18 18 C 1.37880 * 119.99796 * 300.00058 * 16 14 13 19 19 N 1.31514 * 120.00129 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99743 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47288 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46952 * 119.99966 * 20 18 16 23 23 H 1.48498 * 109.47165 * 239.99563 * 20 18 16 24 24 C 1.50702 * 109.47176 * 149.99815 * 14 13 11 25 25 C 1.34512 * 125.78762 * 219.99977 * 24 14 13 26 26 C 1.41385 * 106.83926 * 179.76997 * 25 24 14 27 27 C 1.34515 * 106.83992 * 0.23220 * 26 25 24 28 28 O 1.34305 * 125.78789 * 40.16190 * 24 14 13 29 29 C 1.46930 * 120.63156 * 180.02562 * 5 3 2 30 30 H 1.08998 * 109.46900 * 59.99454 * 1 2 3 31 31 H 1.08999 * 109.47543 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46592 * 300.00057 * 1 2 3 33 33 H 1.08997 * 109.46782 * 240.00024 * 2 1 3 34 34 H 1.08998 * 109.46900 * 120.00546 * 2 1 3 35 35 H 1.08998 * 109.58257 * 246.15365 * 6 5 3 36 36 H 1.08993 * 109.58441 * 6.58227 * 6 5 3 37 37 H 1.08999 * 109.49503 * 174.58719 * 7 6 5 38 38 H 1.08998 * 109.49776 * 294.64781 * 7 6 5 39 39 H 1.09001 * 109.45818 * 178.60728 * 8 7 6 40 40 H 1.08997 * 109.45970 * 58.66000 * 8 7 6 41 41 H 0.96998 * 120.00207 * 180.02562 * 19 18 16 42 42 H 1.08002 * 126.58498 * 0.04167 * 25 24 14 43 43 H 1.08002 * 126.58069 * 180.26215 * 26 25 24 44 44 H 1.08000 * 125.79123 * 180.02562 * 27 26 25 45 45 H 1.09003 * 109.58378 * 113.84529 * 29 5 3 46 46 H 1.09001 * 109.70173 * 353.49204 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2444 2.3426 0.0005 5 7 3.3575 1.6669 0.0005 6 6 4.3245 0.5607 0.0005 7 6 5.2969 0.7558 -1.1670 8 6 5.9313 2.1452 -1.0705 9 6 4.8401 3.2139 -1.1670 10 1 4.3039 3.1029 -2.1094 11 6 5.4691 4.5820 -1.1043 12 8 6.6676 4.6915 -0.9968 13 8 4.6979 5.6787 -1.1680 14 6 5.3717 6.9632 -1.1011 15 1 6.3706 6.8722 -1.5280 16 6 5.4780 7.4005 0.3371 17 1 6.4485 7.5703 0.7795 18 6 4.3363 7.5838 1.0880 19 7 3.1546 7.3775 0.5491 20 14 4.4682 8.1252 2.8710 21 1 5.8987 8.2886 3.2343 22 1 3.7619 9.4194 3.0488 23 1 3.8485 7.0988 3.7471 24 6 4.5839 7.9849 -1.8799 25 6 5.1019 8.9416 -2.6710 26 6 4.0116 9.6666 -3.2045 27 6 2.8928 9.1129 -2.7034 28 8 3.2456 8.0965 -1.8994 29 6 3.8626 3.0467 0.0011 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.8772 0.5586 0.9400 36 1 3.7969 -0.3857 -0.1176 37 1 6.0769 -0.0042 -1.1217 38 1 4.7565 0.6668 -2.1094 39 1 6.6422 2.2773 -1.8862 40 1 6.4510 2.2417 -0.1172 41 1 2.3513 7.5069 1.0773 42 1 6.1494 9.1189 -2.8652 43 1 4.0665 10.5041 -3.8843 44 1 1.8822 9.4312 -2.9126 45 1 4.3777 3.2468 0.9406 46 1 3.0315 3.7423 -0.1153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650512632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:05 Heat of formation + Delta-G solvation = -129.065938 kcal Electronic energy + Delta-G solvation = -30189.485823 eV Core-core repulsion = 26045.142619 eV Total energy + Delta-G solvation = -4144.343204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.06539 -41.65156 -40.76829 -38.47916 -37.26489 -34.97695 -34.37215 -33.59400 -33.39300 -32.42281 -31.51219 -28.44603 -27.03769 -26.19792 -24.86376 -24.14205 -22.74941 -22.21978 -21.25094 -20.93265 -19.86632 -19.01962 -18.44814 -18.30517 -17.86282 -17.18440 -16.91441 -16.86288 -16.49035 -16.27876 -16.23663 -15.36470 -15.19636 -15.01587 -14.69605 -14.52341 -14.42568 -13.79540 -13.74990 -13.58315 -13.51153 -13.37951 -13.12983 -13.05003 -12.93447 -12.89386 -12.67006 -12.50354 -12.23308 -12.01467 -11.98989 -11.89874 -11.87252 -11.64783 -11.35013 -10.99218 -10.85297 -10.74891 -10.51611 -9.72959 -9.11851 -8.24904 -6.55770 1.14255 1.30537 1.33827 1.35360 1.45025 1.65808 1.84768 1.97347 2.25346 2.29722 2.58704 3.05387 3.50581 3.67800 3.75540 3.78837 4.02547 4.10025 4.13036 4.21059 4.29250 4.31739 4.37650 4.43976 4.49229 4.60089 4.63447 4.68466 4.76808 4.83561 4.90253 4.99065 5.08043 5.08308 5.10457 5.14435 5.19721 5.35819 5.37870 5.40373 5.46900 5.54084 5.76280 5.87485 5.95271 6.43479 6.47863 6.70141 7.07427 7.19858 7.23436 8.71912 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.003884 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.334773 B = 7207.995932 C = 7409.982150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.497 3.503 4 O -0.594 6.594 5 N -0.610 5.610 6 C 0.096 3.904 7 C -0.123 4.123 8 C -0.100 4.100 9 C -0.082 4.082 10 H 0.107 0.893 11 C 0.455 3.545 12 O -0.547 6.547 13 O -0.350 6.350 14 C 0.277 3.723 15 H 0.060 0.940 16 C -0.575 4.575 17 H 0.062 0.938 18 C 0.042 3.958 19 N -0.841 5.841 20 Si 0.952 3.048 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.276 1.276 24 C 0.037 3.963 25 C -0.264 4.264 26 C -0.217 4.217 27 C -0.086 4.086 28 O -0.143 6.143 29 C 0.135 3.865 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.039 0.961 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.266 0.734 42 H 0.148 0.852 43 H 0.172 0.828 44 H 0.222 0.778 45 H 0.057 0.943 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 -17.219 -3.843 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.288 3.712 4 O -0.475 6.475 5 N -0.343 5.343 6 C -0.024 4.024 7 C -0.161 4.161 8 C -0.137 4.137 9 C -0.102 4.102 10 H 0.125 0.875 11 C 0.299 3.701 12 O -0.439 6.439 13 O -0.265 6.265 14 C 0.225 3.775 15 H 0.078 0.922 16 C -0.611 4.611 17 H 0.080 0.920 18 C -0.167 4.167 19 N -0.474 5.474 20 Si 0.776 3.224 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.202 1.202 24 C -0.016 4.016 25 C -0.283 4.283 26 C -0.236 4.236 27 C -0.154 4.154 28 O -0.036 6.036 29 C 0.011 3.989 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.166 0.834 43 H 0.189 0.811 44 H 0.238 0.762 45 H 0.076 0.924 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.250 -16.856 -3.634 17.289 hybrid contribution 0.273 1.555 0.892 1.814 sum -0.976 -15.301 -2.742 15.575 Atomic orbital electron populations 1.21567 0.93818 1.02782 1.01494 1.21749 0.97827 0.90276 1.07042 1.21936 0.81223 0.93634 0.74442 1.90737 1.56195 1.48859 1.51669 1.48320 1.06509 1.06482 1.73035 1.22236 0.90839 0.89514 0.99841 1.21954 0.99618 0.95422 0.99095 1.21453 0.95453 0.93347 1.03477 1.21426 0.98654 0.88541 1.01616 0.87454 1.23971 0.85837 0.88459 0.71869 1.90507 1.17387 1.88334 1.47683 1.86741 1.42958 1.16091 1.80706 1.18642 0.88408 0.75957 0.94523 0.92207 1.21404 0.93647 1.50276 0.95773 0.91972 1.25795 0.94809 0.93578 1.02478 1.70171 0.97669 1.42460 1.37089 0.85600 0.78739 0.78296 0.79749 1.18901 1.19797 1.20171 1.22791 0.81308 1.00270 0.97233 1.21582 1.00939 1.00918 1.04847 1.21905 0.91209 1.04329 1.06157 1.24734 1.01559 0.92482 0.96669 1.84429 1.23223 1.43666 1.52266 1.21004 0.96625 0.84908 0.96355 0.94000 0.88805 0.94196 0.85480 0.85822 0.90118 0.85227 0.86477 0.90451 0.90756 0.91674 0.92486 0.83432 0.81090 0.76207 0.92446 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.20 71.98 0.66 -1.83 16 2 C -0.13 -1.98 4.77 29.85 0.14 -1.84 16 3 C 0.50 14.16 7.70 87.65 0.67 14.83 16 4 O -0.59 -24.46 15.40 -3.03 -0.05 -24.50 16 5 N -0.61 -16.13 2.97 -818.83 -2.43 -18.57 16 6 C 0.10 1.41 6.34 86.36 0.55 1.96 16 7 C -0.12 -1.80 6.08 30.67 0.19 -1.61 16 8 C -0.10 -2.52 4.46 30.62 0.14 -2.38 16 9 C -0.08 -2.84 2.78 -11.45 -0.03 -2.88 16 10 H 0.11 3.53 8.14 -2.39 -0.02 3.52 16 11 C 0.45 21.01 7.22 71.24 0.51 21.52 16 12 O -0.55 -26.83 15.20 21.95 0.33 -26.50 16 13 O -0.35 -18.83 9.19 -49.45 -0.45 -19.28 16 14 C 0.28 15.26 2.58 29.10 0.08 15.34 16 15 H 0.06 3.26 7.15 -2.38 -0.02 3.25 16 16 C -0.58 -33.31 8.90 25.60 0.23 -33.08 16 17 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 18 C 0.04 2.38 5.24 84.66 0.44 2.83 16 19 N -0.84 -49.14 10.44 21.45 0.22 -48.91 16 20 Si 0.95 44.59 29.54 68.60 2.03 46.61 16 21 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 C 0.04 1.93 5.68 24.83 0.14 2.07 16 25 C -0.26 -11.88 10.80 22.19 0.24 -11.64 16 26 C -0.22 -8.40 10.91 22.19 0.24 -8.16 16 27 C -0.09 -3.54 12.09 66.97 0.81 -2.73 16 28 O -0.14 -7.50 8.62 -1.40 -0.01 -7.51 16 29 C 0.14 4.96 5.64 86.37 0.49 5.45 16 30 H 0.04 0.91 8.10 -2.39 -0.02 0.89 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.04 0.88 8.10 -2.38 -0.02 0.86 16 33 H 0.13 1.11 7.69 -2.39 -0.02 1.09 16 34 H 0.12 1.15 7.94 -2.39 -0.02 1.13 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.13 0.83 5.93 -2.39 -0.01 0.81 16 37 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.90 8.07 -2.39 -0.02 1.88 16 40 H 0.06 1.77 8.13 -2.39 -0.02 1.75 16 41 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.15 5.98 8.06 -2.91 -0.02 5.95 16 43 H 0.17 5.09 8.06 -2.91 -0.02 5.06 16 44 H 0.22 6.90 8.06 -2.91 -0.02 6.88 16 45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.06 3.01 7.01 -2.39 -0.02 3.00 16 Total: -1.00 -81.89 380.35 6.11 -75.78 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.98 Total: 25.04 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.50 Total: -2.16 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -2.21 Total: -67.48 kcal Atomic # 8 Polarization: -77.62 SS G_CDS: -0.18 Total: -77.80 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -81.89 6.11 -75.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650512632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.289 kcal (2) G-P(sol) polarization free energy of solvation -81.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds