Wall clock time and date at job start Tue Mar 31 2020 19:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.47269 * 2 1 4 4 O 1.21284 * 120.00027 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00113 * 179.97438 * 3 2 1 6 6 C 1.46924 * 120.63366 * 0.02562 * 5 3 2 7 7 C 1.53187 * 108.77704 * 233.61146 * 6 5 3 8 8 C 1.53041 * 109.30937 * 305.35940 * 7 6 5 9 9 C 1.53041 * 109.53965 * 61.36723 * 8 7 6 10 10 H 1.09010 * 109.49294 * 58.61683 * 9 8 7 11 11 C 1.50693 * 109.50024 * 178.67761 * 9 8 7 12 12 O 1.20824 * 119.99886 * 359.94317 * 11 9 8 13 13 O 1.34235 * 120.00150 * 179.97438 * 11 9 8 14 14 C 1.45202 * 116.99804 * 180.02562 * 13 11 9 15 15 H 1.08992 * 109.47565 * 30.00195 * 14 13 11 16 16 C 1.50695 * 109.46650 * 150.00245 * 14 13 11 17 17 H 1.08004 * 120.00546 * 0.27413 * 16 14 13 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 14 13 19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46986 * 90.00256 * 20 18 16 22 22 H 1.48496 * 109.47029 * 210.00273 * 20 18 16 23 23 H 1.48499 * 109.47352 * 330.00102 * 20 18 16 24 24 C 1.50700 * 109.46755 * 269.99896 * 14 13 11 25 25 C 1.34514 * 125.78746 * 145.00654 * 24 14 13 26 26 C 1.41383 * 106.83893 * 179.97438 * 25 24 14 27 27 C 1.34513 * 106.84378 * 359.97438 * 26 25 24 28 28 O 1.34297 * 125.79262 * 324.69539 * 24 14 13 29 29 C 1.46936 * 120.60556 * 180.02562 * 5 3 2 30 30 H 1.09004 * 109.46723 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47057 * 300.00415 * 1 2 3 32 32 H 1.09001 * 109.46387 * 60.00227 * 1 2 3 33 33 H 1.08995 * 109.47057 * 239.99585 * 2 1 3 34 34 H 1.09008 * 109.46746 * 119.99768 * 2 1 3 35 35 H 1.08993 * 109.58833 * 113.81604 * 6 5 3 36 36 H 1.09001 * 109.70178 * 353.46382 * 6 5 3 37 37 H 1.09004 * 109.49688 * 185.41230 * 7 6 5 38 38 H 1.08998 * 109.52714 * 65.32644 * 7 6 5 39 39 H 1.08994 * 109.46347 * 301.34358 * 8 7 6 40 40 H 1.09004 * 109.46113 * 181.38554 * 8 7 6 41 41 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 42 42 H 1.08003 * 126.57829 * 359.95563 * 25 24 14 43 43 H 1.08008 * 126.57473 * 179.97438 * 26 25 24 44 44 H 1.07999 * 125.78937 * 179.97438 * 27 26 25 45 45 H 1.08997 * 109.61343 * 6.61886 * 29 5 3 46 46 H 1.09001 * 109.56129 * 246.19906 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3245 0.5609 0.0005 7 6 5.2964 0.7557 1.1685 8 6 5.9308 2.1451 1.0726 9 6 4.8396 3.2138 1.1689 10 1 4.3034 3.1022 2.1114 11 6 5.4685 4.5818 1.1070 12 8 6.6668 4.6915 0.9981 13 8 4.6974 5.6786 1.1735 14 6 5.3713 6.9631 1.1072 15 1 6.2772 6.8677 0.5088 16 6 4.4555 7.9786 0.4739 17 1 3.4644 7.6888 0.1573 18 6 4.8807 9.2792 0.3042 19 7 6.0856 9.6334 0.6946 20 14 3.7458 10.5378 -0.4815 21 1 2.9377 11.2019 0.5727 22 1 4.5557 11.5550 -1.1987 23 1 2.8417 9.8571 -1.4430 24 6 5.7337 7.4126 2.4992 25 6 6.8382 8.0999 2.8413 26 6 6.7744 8.3088 4.2382 27 6 5.6344 7.7372 4.6661 28 8 5.0058 7.2000 3.6077 29 6 3.8619 3.0471 0.0011 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 4.8775 0.5590 -0.9387 36 1 3.7988 -0.3868 0.1169 37 1 6.0765 -0.0044 1.1232 38 1 4.7560 0.6667 2.1109 39 1 6.4508 2.2419 0.1196 40 1 6.6413 2.2770 1.8886 41 1 6.3848 10.5483 0.5749 42 1 7.6234 8.4287 2.1766 43 1 7.5015 8.8278 4.8452 44 1 5.2827 7.7164 5.6870 45 1 3.0295 3.7408 0.1194 46 1 4.3768 3.2478 -0.9384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650512634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:12 Heat of formation + Delta-G solvation = -114.170173 kcal Electronic energy + Delta-G solvation = -29732.281846 eV Core-core repulsion = 25588.584571 eV Total energy + Delta-G solvation = -4143.697275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34867 -40.54648 -39.50538 -37.41649 -35.75582 -33.49203 -33.27081 -32.60599 -31.68315 -31.46071 -29.56055 -26.71033 -26.13231 -25.03625 -23.38981 -22.98523 -21.62448 -20.57506 -19.89109 -19.23281 -18.99235 -17.56607 -17.10319 -16.67197 -16.40514 -16.10855 -15.84698 -15.31154 -15.20909 -14.78629 -14.49010 -14.36284 -14.20648 -13.93436 -13.51212 -13.16915 -13.00726 -12.78081 -12.69804 -12.36241 -12.05925 -11.91653 -11.76578 -11.59140 -11.55812 -11.37775 -11.29132 -11.12815 -11.08758 -11.04903 -10.97425 -10.69215 -10.36693 -10.11160 -9.93297 -9.64370 -9.41777 -8.83083 -8.77761 -8.63308 -7.24525 -6.20541 -4.39471 2.52540 2.69613 2.87062 2.96054 3.23438 3.28269 3.31298 3.49924 3.95230 4.18860 4.27514 4.30730 4.58297 4.67370 4.69923 4.82126 4.85865 4.91302 5.06617 5.12314 5.17446 5.26880 5.39441 5.54658 5.56363 5.61052 5.69389 5.73006 5.75811 5.85489 5.90042 6.03835 6.06953 6.10660 6.20668 6.32174 6.40161 6.70367 6.99750 7.16732 7.24554 7.27290 7.38224 7.69948 7.72929 7.84939 8.09871 8.34752 8.49698 8.78002 9.27663 10.76784 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.003447 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.889318 B = 8120.214571 C = 9236.737193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.510 3.490 4 O -0.532 6.532 5 N -0.614 5.614 6 C 0.104 3.896 7 C -0.134 4.134 8 C -0.105 4.105 9 C -0.094 4.094 10 H 0.107 0.893 11 C 0.461 3.539 12 O -0.512 6.512 13 O -0.344 6.344 14 C 0.299 3.701 15 H 0.078 0.922 16 C -0.529 4.529 17 H 0.079 0.921 18 C 0.069 3.931 19 N -0.868 5.868 20 Si 0.914 3.086 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.268 1.268 24 C 0.020 3.980 25 C -0.175 4.175 26 C -0.219 4.219 27 C -0.090 4.090 28 O -0.179 6.179 29 C 0.122 3.878 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.268 0.732 42 H 0.146 0.854 43 H 0.130 0.870 44 H 0.184 0.816 45 H 0.110 0.890 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 -19.662 0.786 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.299 3.701 4 O -0.408 6.408 5 N -0.348 5.348 6 C -0.019 4.019 7 C -0.172 4.172 8 C -0.143 4.143 9 C -0.115 4.115 10 H 0.125 0.875 11 C 0.302 3.698 12 O -0.401 6.401 13 O -0.260 6.260 14 C 0.246 3.754 15 H 0.096 0.904 16 C -0.566 4.566 17 H 0.097 0.903 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.740 3.260 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.031 4.031 25 C -0.194 4.194 26 C -0.239 4.239 27 C -0.157 4.157 28 O -0.075 6.075 29 C -0.001 4.001 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.163 0.837 43 H 0.148 0.852 44 H 0.201 0.799 45 H 0.129 0.871 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.645 -19.062 0.747 19.259 hybrid contribution 0.042 1.224 0.012 1.224 sum -2.603 -17.839 0.759 18.044 Atomic orbital electron populations 1.21549 0.93023 1.01440 1.03572 1.21657 0.98611 0.93898 1.04024 1.20816 0.81548 0.91956 0.75797 1.90745 1.54607 1.46512 1.48979 1.48156 1.05719 1.07083 1.73867 1.21813 0.91181 0.89619 0.99286 1.21944 0.98886 0.97605 0.98773 1.21419 0.96559 0.92056 1.04220 1.21361 0.97908 0.90073 1.02112 0.87546 1.23174 0.86077 0.87601 0.72921 1.90616 1.16233 1.87743 1.45490 1.86573 1.42026 1.16059 1.81357 1.19200 0.95403 0.75546 0.85278 0.90425 1.20925 1.01878 0.93317 1.40515 0.90323 1.24938 0.95717 0.98061 0.94895 1.70029 1.17127 1.19190 1.43964 0.86230 0.80169 0.80241 0.79349 1.20296 1.20815 1.19299 1.23587 0.90087 1.02230 0.87206 1.21287 1.00665 1.03963 0.93489 1.21722 0.99677 1.06317 0.96159 1.23601 0.95599 1.04888 0.91617 1.83991 1.45589 1.62464 1.15474 1.21512 0.98294 0.83372 0.96890 0.92186 0.91878 0.91910 0.89024 0.88972 0.90940 0.89488 0.90009 0.91199 0.90606 0.90436 0.92165 0.83659 0.85158 0.79929 0.87132 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.14 -1.10 4.77 -27.88 -0.13 -1.23 16 3 C 0.51 6.32 7.70 -10.99 -0.08 6.23 16 4 O -0.53 -9.07 15.39 5.55 0.09 -8.98 16 5 N -0.61 -6.98 2.97 -172.75 -0.51 -7.49 16 6 C 0.10 0.77 6.34 -3.71 -0.02 0.75 16 7 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 8 C -0.10 -1.23 4.46 -26.69 -0.12 -1.35 16 9 C -0.09 -1.40 2.78 -91.64 -0.25 -1.65 16 10 H 0.11 1.53 8.14 -51.92 -0.42 1.11 16 11 C 0.46 9.34 7.22 36.00 0.26 9.60 16 12 O -0.51 -11.48 15.20 -18.75 -0.28 -11.77 16 13 O -0.34 -8.19 9.77 -42.02 -0.41 -8.60 16 14 C 0.30 7.96 2.41 -29.04 -0.07 7.89 16 15 H 0.08 2.19 7.16 -51.93 -0.37 1.82 16 16 C -0.53 -14.76 8.89 -34.44 -0.31 -15.07 16 17 H 0.08 2.18 7.81 -52.48 -0.41 1.77 16 18 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 19 N -0.87 -24.01 10.48 55.43 0.58 -23.43 16 20 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.02 0.52 5.67 -35.62 -0.20 0.32 16 25 C -0.17 -4.39 9.04 -39.70 -0.36 -4.75 16 26 C -0.22 -4.75 10.91 -39.70 -0.43 -5.19 16 27 C -0.09 -1.88 12.09 29.42 0.36 -1.52 16 28 O -0.18 -4.45 10.63 2.21 0.02 -4.43 16 29 C 0.12 1.74 5.65 -3.69 -0.02 1.72 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.09 0.52 7.94 -51.93 -0.41 0.10 16 34 H 0.09 0.53 7.70 -51.92 -0.40 0.13 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.42 5.95 -51.93 -0.31 0.11 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 40 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 41 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.15 3.76 7.49 -52.48 -0.39 3.36 16 43 H 0.13 2.39 8.06 -52.48 -0.42 1.96 16 44 H 0.18 2.91 8.06 -52.49 -0.42 2.48 16 45 H 0.11 1.89 7.00 -51.93 -0.36 1.52 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -33.79 380.52 -7.97 -41.76 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.86 Total: 5.50 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.30 Total: -4.47 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.07 Total: -30.92 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.59 Total: -33.78 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.79 -7.97 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650512634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.415 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds