Wall clock time and date at job start Tue Mar 31 2020 19:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.47269 * 2 1 4 4 O 1.21284 * 120.00027 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00113 * 179.97438 * 3 2 1 6 6 C 1.46924 * 120.63366 * 0.02562 * 5 3 2 7 7 C 1.53187 * 108.77704 * 233.61146 * 6 5 3 8 8 C 1.53041 * 109.30937 * 305.35940 * 7 6 5 9 9 C 1.53041 * 109.53965 * 61.36723 * 8 7 6 10 10 H 1.09010 * 109.49294 * 58.61683 * 9 8 7 11 11 C 1.50693 * 109.50024 * 178.67761 * 9 8 7 12 12 O 1.20824 * 119.99886 * 359.94317 * 11 9 8 13 13 O 1.34235 * 120.00150 * 179.97438 * 11 9 8 14 14 C 1.45202 * 116.99804 * 180.02562 * 13 11 9 15 15 H 1.08992 * 109.47565 * 30.00195 * 14 13 11 16 16 C 1.50695 * 109.46650 * 150.00245 * 14 13 11 17 17 H 1.08004 * 120.00546 * 0.27413 * 16 14 13 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 14 13 19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46986 * 90.00256 * 20 18 16 22 22 H 1.48496 * 109.47029 * 210.00273 * 20 18 16 23 23 H 1.48499 * 109.47352 * 330.00102 * 20 18 16 24 24 C 1.50700 * 109.46755 * 269.99896 * 14 13 11 25 25 C 1.34514 * 125.78746 * 145.00654 * 24 14 13 26 26 C 1.41383 * 106.83893 * 179.97438 * 25 24 14 27 27 C 1.34513 * 106.84378 * 359.97438 * 26 25 24 28 28 O 1.34297 * 125.79262 * 324.69539 * 24 14 13 29 29 C 1.46936 * 120.60556 * 180.02562 * 5 3 2 30 30 H 1.09004 * 109.46723 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47057 * 300.00415 * 1 2 3 32 32 H 1.09001 * 109.46387 * 60.00227 * 1 2 3 33 33 H 1.08995 * 109.47057 * 239.99585 * 2 1 3 34 34 H 1.09008 * 109.46746 * 119.99768 * 2 1 3 35 35 H 1.08993 * 109.58833 * 113.81604 * 6 5 3 36 36 H 1.09001 * 109.70178 * 353.46382 * 6 5 3 37 37 H 1.09004 * 109.49688 * 185.41230 * 7 6 5 38 38 H 1.08998 * 109.52714 * 65.32644 * 7 6 5 39 39 H 1.08994 * 109.46347 * 301.34358 * 8 7 6 40 40 H 1.09004 * 109.46113 * 181.38554 * 8 7 6 41 41 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 42 42 H 1.08003 * 126.57829 * 359.95563 * 25 24 14 43 43 H 1.08008 * 126.57473 * 179.97438 * 26 25 24 44 44 H 1.07999 * 125.78937 * 179.97438 * 27 26 25 45 45 H 1.08997 * 109.61343 * 6.61886 * 29 5 3 46 46 H 1.09001 * 109.56129 * 246.19906 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3245 0.5609 0.0005 7 6 5.2964 0.7557 1.1685 8 6 5.9308 2.1451 1.0726 9 6 4.8396 3.2138 1.1689 10 1 4.3034 3.1022 2.1114 11 6 5.4685 4.5818 1.1070 12 8 6.6668 4.6915 0.9981 13 8 4.6974 5.6786 1.1735 14 6 5.3713 6.9631 1.1072 15 1 6.2772 6.8677 0.5088 16 6 4.4555 7.9786 0.4739 17 1 3.4644 7.6888 0.1573 18 6 4.8807 9.2792 0.3042 19 7 6.0856 9.6334 0.6946 20 14 3.7458 10.5378 -0.4815 21 1 2.9377 11.2019 0.5727 22 1 4.5557 11.5550 -1.1987 23 1 2.8417 9.8571 -1.4430 24 6 5.7337 7.4126 2.4992 25 6 6.8382 8.0999 2.8413 26 6 6.7744 8.3088 4.2382 27 6 5.6344 7.7372 4.6661 28 8 5.0058 7.2000 3.6077 29 6 3.8619 3.0471 0.0011 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 4.8775 0.5590 -0.9387 36 1 3.7988 -0.3868 0.1169 37 1 6.0765 -0.0044 1.1232 38 1 4.7560 0.6667 2.1109 39 1 6.4508 2.2419 0.1196 40 1 6.6413 2.2770 1.8886 41 1 6.3848 10.5483 0.5749 42 1 7.6234 8.4287 2.1766 43 1 7.5015 8.8278 4.8452 44 1 5.2827 7.7164 5.6870 45 1 3.0295 3.7408 0.1194 46 1 4.3768 3.2478 -0.9384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650512634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:11 Heat of formation + Delta-G solvation = -134.636091 kcal Electronic energy + Delta-G solvation = -29733.169315 eV Core-core repulsion = 25588.584571 eV Total energy + Delta-G solvation = -4144.584744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.21637 -41.80681 -40.89676 -38.55627 -37.50491 -35.37198 -34.41096 -33.55892 -33.40783 -32.48057 -31.42261 -28.65218 -27.05706 -26.25482 -24.83280 -24.15941 -22.85268 -22.34987 -21.46118 -20.92745 -19.89421 -19.13018 -18.55022 -18.44922 -17.96899 -17.39478 -17.11465 -16.79515 -16.49781 -16.49717 -16.27742 -15.54738 -15.20755 -14.89287 -14.69506 -14.62671 -14.45946 -13.98133 -13.75849 -13.67267 -13.52479 -13.52049 -13.23353 -13.05432 -13.00550 -12.86905 -12.69543 -12.52875 -12.25724 -12.09679 -12.00480 -11.98748 -11.91639 -11.70288 -11.48257 -11.38081 -10.85642 -10.78748 -10.53805 -9.74398 -9.14854 -8.27064 -6.57044 1.06602 1.11770 1.35959 1.38161 1.48592 1.63623 1.74853 1.99284 2.11029 2.36111 2.39748 2.96665 3.45954 3.58109 3.67650 3.75554 3.98344 4.06911 4.10487 4.21041 4.24006 4.30900 4.38139 4.46409 4.54878 4.57563 4.62992 4.65446 4.74190 4.80950 4.87331 5.00673 5.07240 5.09810 5.12018 5.13005 5.30114 5.35161 5.36717 5.38685 5.43592 5.47161 5.63083 5.80332 5.92330 6.41166 6.44261 6.53123 6.84019 7.14815 7.18103 8.68338 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.003447 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.889318 B = 8120.214571 C = 9236.737193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C 0.500 3.500 4 O -0.593 6.593 5 N -0.610 5.610 6 C 0.097 3.903 7 C -0.124 4.124 8 C -0.102 4.102 9 C -0.081 4.081 10 H 0.112 0.888 11 C 0.453 3.547 12 O -0.537 6.537 13 O -0.359 6.359 14 C 0.303 3.697 15 H 0.045 0.955 16 C -0.559 4.559 17 H 0.068 0.932 18 C 0.028 3.972 19 N -0.887 5.887 20 Si 0.978 3.022 21 H -0.274 1.274 22 H -0.270 1.270 23 H -0.265 1.265 24 C -0.012 4.012 25 C -0.187 4.187 26 C -0.228 4.228 27 C -0.072 4.072 28 O -0.198 6.198 29 C 0.127 3.873 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.272 0.728 42 H 0.128 0.872 43 H 0.167 0.833 44 H 0.240 0.760 45 H 0.073 0.927 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 -22.200 1.901 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.291 3.709 4 O -0.473 6.473 5 N -0.343 5.343 6 C -0.023 4.023 7 C -0.162 4.162 8 C -0.140 4.140 9 C -0.101 4.101 10 H 0.129 0.871 11 C 0.297 3.703 12 O -0.427 6.427 13 O -0.275 6.275 14 C 0.249 3.751 15 H 0.062 0.938 16 C -0.595 4.595 17 H 0.087 0.913 18 C -0.176 4.176 19 N -0.522 5.522 20 Si 0.801 3.199 21 H -0.199 1.199 22 H -0.194 1.194 23 H -0.189 1.189 24 C -0.062 4.062 25 C -0.206 4.206 26 C -0.247 4.247 27 C -0.138 4.138 28 O -0.096 6.096 29 C 0.003 3.997 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.146 0.854 43 H 0.185 0.815 44 H 0.256 0.744 45 H 0.092 0.908 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.824 -21.655 1.862 21.917 hybrid contribution 0.183 1.980 -0.273 2.007 sum -2.641 -19.675 1.589 19.915 Atomic orbital electron populations 1.21570 0.93867 1.02733 1.01575 1.21753 0.97787 0.90500 1.07024 1.21858 0.81171 0.93550 0.74309 1.90724 1.56138 1.48735 1.51716 1.48285 1.06449 1.06464 1.73096 1.22216 0.90750 0.89583 0.99781 1.21953 0.99706 0.95225 0.99277 1.21483 0.95433 0.93443 1.03624 1.21478 0.98932 0.87226 1.02455 0.87052 1.24354 0.85946 0.88496 0.71542 1.90582 1.17423 1.88139 1.46590 1.86571 1.42732 1.16318 1.81896 1.18756 0.93894 0.76697 0.85782 0.93780 1.21139 1.01808 0.94568 1.42013 0.91342 1.25775 0.97230 0.99545 0.95044 1.70145 1.18287 1.19637 1.44136 0.85253 0.78340 0.77757 0.78536 1.19948 1.19437 1.18911 1.23377 0.91212 1.04102 0.87554 1.21357 0.99979 1.03850 0.95436 1.22081 1.01058 1.06948 0.94583 1.24691 0.94577 1.01968 0.92553 1.83964 1.46235 1.63326 1.16062 1.21170 0.96726 0.85318 0.96456 0.89065 0.94002 0.93961 0.85743 0.85686 0.89696 0.85315 0.86618 0.90581 0.91123 0.91302 0.91874 0.85430 0.81521 0.74434 0.90813 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.20 71.98 0.66 -1.44 16 2 C -0.13 -1.58 4.77 29.85 0.14 -1.44 16 3 C 0.50 11.96 7.70 87.66 0.67 12.64 16 4 O -0.59 -21.18 15.39 -3.04 -0.05 -21.22 16 5 N -0.61 -13.13 2.97 -818.86 -2.43 -15.57 16 6 C 0.10 1.07 6.34 86.36 0.55 1.62 16 7 C -0.12 -1.49 6.08 30.67 0.19 -1.31 16 8 C -0.10 -2.30 4.46 30.62 0.14 -2.17 16 9 C -0.08 -2.48 2.78 -11.45 -0.03 -2.51 16 10 H 0.11 3.29 8.14 -2.38 -0.02 3.27 16 11 C 0.45 19.66 7.22 71.23 0.51 20.17 16 12 O -0.54 -25.73 15.20 21.97 0.33 -25.40 16 13 O -0.36 -18.43 9.77 -48.83 -0.48 -18.91 16 14 C 0.30 17.26 2.41 29.10 0.07 17.33 16 15 H 0.04 2.74 7.16 -2.39 -0.02 2.72 16 16 C -0.56 -32.98 8.89 25.60 0.23 -32.75 16 17 H 0.07 4.04 7.81 -2.91 -0.02 4.02 16 18 C 0.03 1.55 5.30 84.66 0.45 2.00 16 19 N -0.89 -50.79 10.48 21.45 0.22 -50.57 16 20 Si 0.98 44.43 29.54 68.60 2.03 46.46 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 24 C -0.01 -0.66 5.67 24.83 0.14 -0.52 16 25 C -0.19 -9.68 9.04 22.19 0.20 -9.48 16 26 C -0.23 -9.60 10.91 22.19 0.24 -9.36 16 27 C -0.07 -2.86 12.09 66.97 0.81 -2.05 16 28 O -0.20 -10.02 10.63 0.92 0.01 -10.01 16 29 C 0.13 3.83 5.65 86.37 0.49 4.32 16 30 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.04 0.79 8.10 -2.39 -0.02 0.78 16 32 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 33 H 0.12 0.76 7.94 -2.39 -0.02 0.74 16 34 H 0.13 0.76 7.70 -2.38 -0.02 0.74 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.13 0.43 5.95 -2.39 -0.01 0.42 16 37 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.67 8.13 -2.39 -0.02 1.65 16 40 H 0.07 1.68 8.07 -2.38 -0.02 1.66 16 41 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.13 6.96 7.49 -2.91 -0.02 6.94 16 43 H 0.17 5.65 8.06 -2.91 -0.02 5.63 16 44 H 0.24 6.51 8.06 -2.91 -0.02 6.49 16 45 H 0.07 2.77 7.00 -2.39 -0.02 2.76 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -82.01 380.52 6.08 -75.94 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.98 Total: 24.22 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.46 Total: -4.93 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -2.21 Total: -66.14 kcal Atomic # 8 Polarization: -75.36 SS G_CDS: -0.18 Total: -75.54 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -82.01 6.08 -75.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650512634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.699 kcal (2) G-P(sol) polarization free energy of solvation -82.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds