Wall clock time and date at job start Tue Mar 31 2020 19:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.29573 * 2 1 4 4 C 1.54008 * 110.32685 * 122.13754 * 2 1 3 5 5 N 1.47479 * 107.08507 * 120.19549 * 4 2 1 6 6 C 1.34782 * 127.03470 * 154.51900 * 5 4 2 7 7 O 1.21684 * 120.00048 * 185.52869 * 6 5 4 8 8 C 1.46685 * 119.99643 * 5.52651 * 6 5 4 9 9 S 1.76210 * 126.13200 * 6.22496 * 8 6 5 10 10 C 1.70951 * 90.31521 * 180.02562 * 9 8 6 11 11 N 1.29431 * 110.38751 * 0.02562 * 10 9 8 12 12 C 1.30938 * 117.36690 * 359.97438 * 11 10 9 13 13 C 1.50696 * 122.90352 * 180.02562 * 12 11 10 14 14 C 1.52994 * 117.50113 * 8.59688 * 13 12 11 15 15 C 1.53000 * 60.00501 * 252.51202 * 14 13 12 16 16 C 1.48118 * 105.93361 * 334.77944 * 5 4 2 17 17 C 1.54588 * 103.42341 * 39.02529 * 16 5 4 18 18 H 1.09002 * 110.57929 * 81.16744 * 17 16 5 19 19 C 1.52998 * 110.83669 * 204.44795 * 17 16 5 20 20 N 1.46504 * 109.46935 * 288.56486 * 19 17 16 21 21 C 1.36942 * 119.99807 * 180.02562 * 20 19 17 22 22 H 1.07992 * 120.00141 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99816 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99903 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99838 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47176 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46805 * 120.00092 * 25 23 21 28 28 H 1.48498 * 109.47279 * 239.99823 * 25 23 21 29 29 H 1.08998 * 109.47244 * 299.32485 * 1 2 3 30 30 H 1.09001 * 109.47209 * 59.31645 * 1 2 3 31 31 H 1.08999 * 109.47837 * 179.31654 * 1 2 3 32 32 H 1.08996 * 109.90729 * 0.83429 * 4 2 1 33 33 H 1.08999 * 110.06875 * 239.64870 * 4 2 1 34 34 H 1.08002 * 124.80654 * 180.02562 * 10 9 8 35 35 H 1.09004 * 115.55197 * 154.31275 * 13 12 11 36 36 H 1.09000 * 117.49991 * 359.97438 * 14 13 12 37 37 H 1.08997 * 117.49971 * 145.02128 * 14 13 12 38 38 H 1.09000 * 117.49649 * 252.51404 * 15 14 13 39 39 H 1.09000 * 117.50209 * 107.48254 * 15 14 13 40 40 H 1.09002 * 110.66524 * 157.51207 * 16 5 4 41 41 H 1.08999 * 110.66266 * 280.62396 * 16 5 4 42 42 H 1.09006 * 109.47269 * 48.56043 * 19 17 16 43 43 H 1.08998 * 109.47614 * 168.55914 * 19 17 16 44 44 H 0.96995 * 120.00326 * 359.97438 * 20 19 17 45 45 H 0.96993 * 120.00135 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8803 -1.8851 0.7102 6 6 3.8922 -2.5096 1.3448 7 8 4.5471 -3.3536 0.7622 8 6 4.2040 -2.1717 2.7378 9 16 3.2742 -1.0966 3.7792 10 6 4.3780 -1.3643 5.0569 11 7 5.3139 -2.1757 4.6816 12 6 5.2604 -2.6302 3.4548 13 6 6.2836 -3.5807 2.8885 14 6 7.3068 -4.1765 3.8573 15 6 7.7390 -3.1103 2.8487 16 6 2.3639 -2.1759 -0.6472 17 6 2.0671 -0.7736 -1.2263 18 1 2.9806 -0.3135 -1.6031 19 6 1.0052 -0.8522 -2.3249 20 7 1.5799 -1.4837 -3.5154 21 6 0.8111 -1.6622 -4.6345 22 1 -0.2189 -1.3378 -4.6393 23 6 1.3558 -2.2602 -5.7626 24 7 2.6114 -2.6551 -5.7568 25 14 0.3070 -2.5043 -7.2889 26 1 -1.0595 -1.9788 -7.0397 27 1 0.9172 -1.7765 -8.4304 28 1 0.2291 -3.9521 -7.6096 29 1 -0.3633 0.5033 0.8960 30 1 -0.3634 0.5244 -0.8838 31 1 -0.3635 -1.0275 -0.0123 32 1 1.2330 -1.1554 1.8111 33 1 2.6800 -0.1111 1.8377 34 1 4.3048 -0.9193 6.0382 35 1 5.9365 -4.2127 2.0710 36 1 7.2402 -3.8807 4.9043 37 1 7.6330 -5.2009 3.6776 38 1 8.3494 -3.4333 2.0054 39 1 7.9563 -2.1134 3.2322 40 1 3.1193 -2.6860 -1.2450 41 1 1.4507 -2.7684 -0.5926 42 1 0.1602 -1.4436 -1.9720 43 1 0.6658 0.1530 -2.5748 44 1 2.5052 -1.7748 -3.5112 45 1 2.9922 -3.0725 -6.5452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672315234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:12 Heat of formation + Delta-G solvation = 56.290175 kcal Electronic energy + Delta-G solvation = -26519.048442 eV Core-core repulsion = 22857.788504 eV Total energy + Delta-G solvation = -3661.259938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72229 -39.88753 -37.89482 -36.60592 -34.72954 -33.00426 -31.28964 -30.97080 -29.04473 -27.08741 -26.14660 -25.22444 -23.50631 -22.95163 -22.43172 -22.01201 -21.05460 -19.19953 -18.70815 -18.35031 -17.13162 -16.67082 -16.38407 -15.92270 -15.45327 -15.29070 -14.74126 -14.61623 -14.50228 -14.35439 -13.96343 -13.52228 -13.36489 -12.97171 -12.57132 -12.49230 -12.36315 -12.25227 -11.97060 -11.88535 -11.62181 -11.55608 -11.03458 -10.91604 -10.86941 -10.62947 -10.53981 -10.46559 -10.30967 -10.11018 -9.99684 -9.76911 -9.74194 -9.65306 -9.05256 -8.87868 -8.63478 -6.92491 -5.75703 -3.05237 -0.00753 0.92095 1.29819 2.17874 2.83265 3.02293 3.43784 3.48919 3.51631 3.75246 3.93091 4.29947 4.48316 4.51600 4.60136 4.69008 4.76162 4.86072 4.91976 5.02740 5.20326 5.26884 5.32340 5.40062 5.49511 5.55303 5.59145 5.66923 5.72974 5.76861 5.85850 5.91438 6.02382 6.04380 6.08960 6.11834 6.19560 6.24361 6.35824 6.43838 6.68622 6.81216 7.30073 7.47342 7.70245 8.03802 8.42397 9.53680 10.10857 10.44829 11.46934 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.002812 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.846716 B = 9955.267607 C =11431.974203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.085 0.915 4 C 0.094 3.906 5 N -0.617 5.617 6 C 0.612 3.388 7 O -0.517 6.517 8 C -0.281 4.281 9 S 0.177 5.823 10 C 0.016 3.984 11 N -0.473 5.473 12 C 0.173 3.827 13 C -0.100 4.100 14 C -0.162 4.162 15 C -0.157 4.157 16 C 0.118 3.882 17 C -0.104 4.104 18 H 0.084 0.916 19 C 0.166 3.834 20 N -0.734 5.734 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.930 5.930 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.203 0.797 35 H 0.146 0.854 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.026 0.974 43 H 0.025 0.975 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.062 5.419 25.062 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.103 0.897 4 C -0.030 4.030 5 N -0.350 5.350 6 C 0.399 3.601 7 O -0.395 6.395 8 C -0.405 4.405 9 S 0.433 5.567 10 C -0.279 4.279 11 N -0.186 5.186 12 C 0.035 3.965 13 C -0.121 4.121 14 C -0.200 4.200 15 C -0.195 4.195 16 C -0.003 4.003 17 C -0.123 4.123 18 H 0.102 0.898 19 C 0.038 3.962 20 N -0.379 5.379 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.219 0.781 35 H 0.163 0.837 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.800 5.424 25.043 25.687 hybrid contribution 0.296 -0.593 -0.975 1.179 sum 2.096 4.831 24.069 24.638 Atomic orbital electron populations 1.21917 0.93704 1.02605 1.02101 1.22002 0.96806 0.99285 0.93240 0.89704 1.22426 0.94796 0.88561 0.97204 1.48671 1.32880 1.34702 1.18752 1.16198 0.79261 0.81321 0.83302 1.90810 1.49350 1.33270 1.66059 1.25415 1.03868 1.10518 1.00719 1.84176 1.28090 1.41176 1.03226 1.28859 0.94979 0.99066 1.05011 1.66020 1.25577 1.11581 1.15451 1.19723 0.93803 0.95600 0.87332 1.20969 0.88002 1.00434 1.02678 1.22975 1.01845 0.98296 0.96865 1.22928 0.95003 0.99643 1.01931 1.22551 0.99727 0.97532 0.80458 1.22479 1.00542 0.94517 0.94808 0.89785 1.20707 0.93204 0.96193 0.86123 1.42419 1.13078 1.72080 1.10280 1.19236 0.94430 1.32737 0.90794 0.91132 1.24756 0.96281 1.01564 0.98324 1.69671 1.12448 1.46403 1.29370 0.86134 0.79291 0.77433 0.83414 1.20577 1.21887 1.21869 0.92879 0.91114 0.92022 0.90759 0.90909 0.78057 0.83667 0.87886 0.88397 0.88001 0.88921 0.88895 0.90392 0.95652 0.95777 0.78245 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.78 37.16 0.29 -1.19 16 2 C -0.09 -1.05 3.53 -89.24 -0.32 -1.37 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.09 1.01 5.10 -2.98 -0.02 0.99 16 5 N -0.62 -8.77 3.29 -171.52 -0.56 -9.34 16 6 C 0.61 9.57 7.83 -12.85 -0.10 9.47 16 7 O -0.52 -9.70 14.51 5.20 0.08 -9.63 16 8 C -0.28 -3.65 6.37 -37.10 -0.24 -3.89 16 9 S 0.18 1.50 19.10 -107.50 -2.05 -0.55 16 10 C 0.02 0.13 12.22 51.75 0.63 0.76 16 11 N -0.47 -5.39 9.80 -11.54 -0.11 -5.50 16 12 C 0.17 2.25 6.42 -83.90 -0.54 1.71 16 13 C -0.10 -1.30 5.50 -91.77 -0.51 -1.80 16 14 C -0.16 -1.69 10.08 -26.73 -0.27 -1.96 16 15 C -0.16 -1.73 10.23 -26.73 -0.27 -2.00 16 16 C 0.12 1.91 6.46 -2.32 -0.01 1.89 16 17 C -0.10 -1.59 2.99 -88.93 -0.27 -1.86 16 18 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 19 C 0.17 3.09 4.44 -4.04 -0.02 3.07 16 20 N -0.73 -18.14 5.52 -59.90 -0.33 -18.47 16 21 C -0.24 -6.65 9.99 -15.05 -0.15 -6.80 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 25 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.77 6.76 -51.93 -0.35 0.42 16 31 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 32 H 0.07 0.69 7.61 -51.93 -0.40 0.29 16 33 H 0.07 0.68 5.74 -41.44 -0.24 0.44 16 34 H 0.20 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.15 2.14 6.08 -51.93 -0.32 1.83 16 36 H 0.10 1.07 7.74 -51.93 -0.40 0.67 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.76 7.81 -51.93 -0.41 1.36 16 41 H 0.08 1.25 7.93 -51.93 -0.41 0.83 16 42 H 0.03 0.47 6.80 -51.93 -0.35 0.12 16 43 H 0.02 0.45 7.37 -51.93 -0.38 0.07 16 44 H 0.38 10.14 7.67 -40.82 -0.31 9.83 16 45 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 372.67 15.07 5.62 5.62 Total: -1.00 -33.22 372.67 -10.01 -43.23 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.46 Total: 8.29 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.88 Total: -3.43 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.28 Total: -60.88 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.05 Total: -0.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.22 -10.01 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672315234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.524 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds