Wall clock time and date at job start Tue Mar 31 2020 19:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.29573 * 2 1 4 4 C 1.54008 * 110.32685 * 122.13754 * 2 1 3 5 5 N 1.47479 * 107.08507 * 120.19549 * 4 2 1 6 6 C 1.34782 * 127.03470 * 154.51900 * 5 4 2 7 7 O 1.21684 * 120.00048 * 185.52869 * 6 5 4 8 8 C 1.46685 * 119.99643 * 5.52651 * 6 5 4 9 9 S 1.76210 * 126.13200 * 6.22496 * 8 6 5 10 10 C 1.70951 * 90.31521 * 180.02562 * 9 8 6 11 11 N 1.29431 * 110.38751 * 0.02562 * 10 9 8 12 12 C 1.30938 * 117.36690 * 359.97438 * 11 10 9 13 13 C 1.50696 * 122.90352 * 180.02562 * 12 11 10 14 14 C 1.52994 * 117.50113 * 8.59688 * 13 12 11 15 15 C 1.53000 * 60.00501 * 252.51202 * 14 13 12 16 16 C 1.48118 * 105.93361 * 334.77944 * 5 4 2 17 17 C 1.54588 * 103.42341 * 39.02529 * 16 5 4 18 18 H 1.09002 * 110.57929 * 81.16744 * 17 16 5 19 19 C 1.52998 * 110.83669 * 204.44795 * 17 16 5 20 20 N 1.46504 * 109.46935 * 288.56486 * 19 17 16 21 21 C 1.36942 * 119.99807 * 180.02562 * 20 19 17 22 22 H 1.07992 * 120.00141 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99816 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99903 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99838 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47176 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46805 * 120.00092 * 25 23 21 28 28 H 1.48498 * 109.47279 * 239.99823 * 25 23 21 29 29 H 1.08998 * 109.47244 * 299.32485 * 1 2 3 30 30 H 1.09001 * 109.47209 * 59.31645 * 1 2 3 31 31 H 1.08999 * 109.47837 * 179.31654 * 1 2 3 32 32 H 1.08996 * 109.90729 * 0.83429 * 4 2 1 33 33 H 1.08999 * 110.06875 * 239.64870 * 4 2 1 34 34 H 1.08002 * 124.80654 * 180.02562 * 10 9 8 35 35 H 1.09004 * 115.55197 * 154.31275 * 13 12 11 36 36 H 1.09000 * 117.49991 * 359.97438 * 14 13 12 37 37 H 1.08997 * 117.49971 * 145.02128 * 14 13 12 38 38 H 1.09000 * 117.49649 * 252.51404 * 15 14 13 39 39 H 1.09000 * 117.50209 * 107.48254 * 15 14 13 40 40 H 1.09002 * 110.66524 * 157.51207 * 16 5 4 41 41 H 1.08999 * 110.66266 * 280.62396 * 16 5 4 42 42 H 1.09006 * 109.47269 * 48.56043 * 19 17 16 43 43 H 1.08998 * 109.47614 * 168.55914 * 19 17 16 44 44 H 0.96995 * 120.00326 * 359.97438 * 20 19 17 45 45 H 0.96993 * 120.00135 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8803 -1.8851 0.7102 6 6 3.8922 -2.5096 1.3448 7 8 4.5471 -3.3536 0.7622 8 6 4.2040 -2.1717 2.7378 9 16 3.2742 -1.0966 3.7792 10 6 4.3780 -1.3643 5.0569 11 7 5.3139 -2.1757 4.6816 12 6 5.2604 -2.6302 3.4548 13 6 6.2836 -3.5807 2.8885 14 6 7.3068 -4.1765 3.8573 15 6 7.7390 -3.1103 2.8487 16 6 2.3639 -2.1759 -0.6472 17 6 2.0671 -0.7736 -1.2263 18 1 2.9806 -0.3135 -1.6031 19 6 1.0052 -0.8522 -2.3249 20 7 1.5799 -1.4837 -3.5154 21 6 0.8111 -1.6622 -4.6345 22 1 -0.2189 -1.3378 -4.6393 23 6 1.3558 -2.2602 -5.7626 24 7 2.6114 -2.6551 -5.7568 25 14 0.3070 -2.5043 -7.2889 26 1 -1.0595 -1.9788 -7.0397 27 1 0.9172 -1.7765 -8.4304 28 1 0.2291 -3.9521 -7.6096 29 1 -0.3633 0.5033 0.8960 30 1 -0.3634 0.5244 -0.8838 31 1 -0.3635 -1.0275 -0.0123 32 1 1.2330 -1.1554 1.8111 33 1 2.6800 -0.1111 1.8377 34 1 4.3048 -0.9193 6.0382 35 1 5.9365 -4.2127 2.0710 36 1 7.2402 -3.8807 4.9043 37 1 7.6330 -5.2009 3.6776 38 1 8.3494 -3.4333 2.0054 39 1 7.9563 -2.1134 3.2322 40 1 3.1193 -2.6860 -1.2450 41 1 1.4507 -2.7684 -0.5926 42 1 0.1602 -1.4436 -1.9720 43 1 0.6658 0.1530 -2.5748 44 1 2.5052 -1.7748 -3.5112 45 1 2.9922 -3.0725 -6.5452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672315234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:11 Heat of formation + Delta-G solvation = 34.440224 kcal Electronic energy + Delta-G solvation = -26519.995927 eV Core-core repulsion = 22857.788504 eV Total energy + Delta-G solvation = -3662.207423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.69868 -40.90979 -39.09626 -37.47577 -36.46875 -34.42642 -32.87416 -32.01471 -30.46300 -28.15243 -27.13548 -26.61007 -25.00528 -23.90637 -23.46514 -23.28249 -22.04924 -20.44273 -19.81311 -19.23609 -18.90266 -17.80059 -17.37078 -17.10842 -16.66169 -16.37715 -16.27752 -15.56861 -15.42255 -15.37050 -15.21553 -15.13611 -14.75366 -14.34860 -13.86451 -13.57639 -13.48393 -13.37569 -13.15673 -13.00775 -12.81286 -12.79982 -12.49307 -12.44789 -12.12435 -11.85384 -11.79089 -11.73915 -11.57935 -11.47790 -11.41434 -11.10347 -10.91251 -10.65149 -10.55714 -10.03840 -9.59655 -8.98432 -7.93955 -5.23198 -0.82693 0.15039 0.54557 1.30713 1.47286 1.48430 1.58428 1.72292 1.94868 2.56462 2.93145 3.11981 3.27016 3.40313 3.47857 3.59030 3.79345 3.81384 3.92193 4.06718 4.08083 4.18781 4.21581 4.33004 4.38930 4.45574 4.54556 4.58720 4.69771 4.76680 4.79802 4.82898 4.83647 4.99722 5.00753 5.10540 5.17217 5.20735 5.23792 5.26350 5.38272 5.51837 5.54161 6.27791 6.31175 6.56674 6.88587 7.33558 8.10419 8.31416 9.30024 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.002812 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.846716 B = 9955.267607 C =11431.974203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.106 0.894 4 C 0.092 3.908 5 N -0.617 5.617 6 C 0.604 3.396 7 O -0.567 6.567 8 C -0.326 4.326 9 S 0.247 5.753 10 C 0.032 3.968 11 N -0.498 5.498 12 C 0.170 3.830 13 C -0.128 4.128 14 C -0.143 4.143 15 C -0.154 4.154 16 C 0.123 3.877 17 C -0.097 4.097 18 H 0.065 0.935 19 C 0.167 3.833 20 N -0.750 5.750 21 C -0.239 4.239 22 H 0.081 0.919 23 C -0.080 4.080 24 N -0.973 5.973 25 Si 0.973 3.027 26 H -0.261 1.261 27 H -0.295 1.295 28 H -0.297 1.297 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.370 0.630 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.107 7.715 28.173 29.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 H 0.124 0.876 4 C -0.030 4.030 5 N -0.349 5.349 6 C 0.393 3.607 7 O -0.448 6.448 8 C -0.450 4.450 9 S 0.504 5.496 10 C -0.262 4.262 11 N -0.212 5.212 12 C 0.032 3.968 13 C -0.149 4.149 14 C -0.180 4.180 15 C -0.192 4.192 16 C 0.000 4.000 17 C -0.117 4.117 18 H 0.084 0.916 19 C 0.041 3.959 20 N -0.393 5.393 21 C -0.371 4.371 22 H 0.099 0.901 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.803 3.197 26 H -0.185 1.185 27 H -0.222 1.222 28 H -0.224 1.224 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.264 0.736 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.201 0.799 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.230 7.784 28.205 29.260 hybrid contribution 0.867 -1.248 -1.807 2.361 sum 0.636 6.536 26.397 27.202 Atomic orbital electron populations 1.21921 0.92311 1.02466 1.03477 1.22015 0.97832 0.99621 0.90717 0.87595 1.22691 0.95323 0.87656 0.97344 1.48698 1.32946 1.35449 1.17839 1.16684 0.78796 0.80700 0.84471 1.90776 1.51028 1.35430 1.67595 1.25220 1.06045 1.13662 1.00069 1.83729 1.26143 1.38559 1.01122 1.29687 0.93274 0.96781 1.06435 1.66077 1.27171 1.13300 1.14610 1.19777 0.93626 0.95328 0.88103 1.20886 0.89189 1.01560 1.03264 1.23014 0.99703 0.98734 0.96559 1.22963 0.93735 1.00093 1.02363 1.22298 0.98328 0.97804 0.81545 1.22305 0.99063 0.94646 0.95663 0.91609 1.20873 0.94118 0.95895 0.84988 1.42707 1.12460 1.72475 1.11635 1.19695 0.94939 1.30984 0.91480 0.90082 1.25613 0.97514 1.02447 1.01649 1.69848 1.14401 1.48218 1.29911 0.85066 0.78488 0.76755 0.79426 1.18537 1.22209 1.22407 0.89456 0.91896 0.92858 0.88340 0.88909 0.73620 0.86570 0.87383 0.87187 0.87703 0.88638 0.93166 0.90443 0.94721 0.94787 0.79888 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.78 71.98 0.56 -1.87 16 2 C -0.08 -1.64 3.53 -9.90 -0.03 -1.67 16 3 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 4 C 0.09 1.73 5.10 86.53 0.44 2.18 16 5 N -0.62 -17.76 3.29 -814.79 -2.68 -20.44 16 6 C 0.60 19.78 7.83 86.45 0.68 20.45 16 7 O -0.57 -23.35 14.51 -4.30 -0.06 -23.41 16 8 C -0.33 -8.32 6.37 23.88 0.15 -8.17 16 9 S 0.25 3.32 19.10 -56.49 -1.08 2.24 16 10 C 0.03 0.40 12.22 130.60 1.60 1.99 16 11 N -0.50 -10.31 9.80 -190.41 -1.87 -12.17 16 12 C 0.17 4.40 6.42 42.09 0.27 4.67 16 13 C -0.13 -3.48 5.50 -11.54 -0.06 -3.55 16 14 C -0.14 -2.97 10.08 30.59 0.31 -2.66 16 15 C -0.15 -3.47 10.23 30.60 0.31 -3.15 16 16 C 0.12 4.16 6.46 86.61 0.56 4.72 16 17 C -0.10 -2.99 2.99 -9.70 -0.03 -3.02 16 18 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 19 C 0.17 6.22 4.44 86.38 0.38 6.61 16 20 N -0.75 -38.09 5.52 -343.44 -1.90 -39.99 16 21 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 22 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 23 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 24 N -0.97 -61.35 13.06 21.65 0.28 -61.07 16 25 Si 0.97 46.65 29.55 68.60 2.03 48.67 16 26 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.18 6.76 -2.39 -0.02 1.17 16 31 H 0.05 1.00 7.51 -2.39 -0.02 0.98 16 32 H 0.10 1.43 7.61 -2.39 -0.02 1.41 16 33 H 0.09 1.39 5.74 -9.06 -0.05 1.33 16 34 H 0.25 0.63 8.06 -2.91 -0.02 0.61 16 35 H 0.12 3.83 6.08 -2.39 -0.01 3.81 16 36 H 0.11 2.14 7.74 -2.39 -0.02 2.12 16 37 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 2.11 7.81 -2.39 -0.02 2.09 16 41 H 0.08 2.59 7.93 -2.39 -0.02 2.57 16 42 H 0.03 1.25 6.80 -2.38 -0.02 1.24 16 43 H 0.03 1.23 7.37 -2.39 -0.02 1.21 16 44 H 0.37 20.62 7.67 -92.71 -0.71 19.91 16 45 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -77.40 372.67 1.43 -75.97 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.27 Total: 30.36 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 6.44 Total: -0.16 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -6.16 Total: -133.67 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.06 Total: -23.41 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.08 Total: 2.24 kcal Total: -77.40 1.43 -75.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672315234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.408 kcal (2) G-P(sol) polarization free energy of solvation -77.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds