Wall clock time and date at job start Tue Mar 31 2020 19:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39901 * 109.47362 * 2 1 4 4 F 1.39895 * 109.47136 * 239.99340 * 2 1 3 5 5 C 1.50701 * 109.46885 * 119.99863 * 2 1 3 6 6 O 1.21284 * 120.00543 * 24.99517 * 5 2 1 7 7 N 1.34784 * 120.00193 * 205.00065 * 5 2 1 8 8 C 1.46498 * 120.00198 * 179.97438 * 7 5 2 9 9 C 1.52996 * 109.47059 * 184.98597 * 8 7 5 10 10 H 1.09000 * 109.54320 * 185.82694 * 9 8 7 11 11 C 1.53095 * 109.50964 * 65.71301 * 9 8 7 12 12 O 1.43019 * 109.26059 * 183.21329 * 11 9 8 13 13 C 1.43017 * 113.73138 * 58.67615 * 12 11 9 14 14 C 1.53097 * 109.26071 * 301.32647 * 13 12 11 15 15 N 1.47009 * 109.25785 * 56.84939 * 14 13 12 16 16 C 1.46903 * 111.00095 * 177.60920 * 15 14 13 17 17 C 1.50703 * 109.47022 * 287.57155 * 16 15 14 18 18 O 1.21295 * 119.99759 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99931 * 179.72595 * 17 16 15 20 20 C 1.37093 * 120.00006 * 180.27520 * 19 17 16 21 21 H 1.08006 * 120.00278 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00022 * 179.97438 * 20 19 17 23 23 N 1.31406 * 119.99947 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99833 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46974 * 90.00592 * 24 22 20 26 26 H 1.48497 * 109.46946 * 210.00104 * 24 22 20 27 27 H 1.48491 * 109.47473 * 330.00504 * 24 22 20 28 28 H 1.09006 * 109.47137 * 300.00541 * 1 2 3 29 29 H 1.08996 * 109.46974 * 59.99799 * 1 2 3 30 30 H 1.09000 * 109.47252 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99440 * 359.97438 * 7 5 2 32 32 H 1.08999 * 109.47110 * 64.98726 * 8 7 5 33 33 H 1.08998 * 109.47060 * 304.98087 * 8 7 5 34 34 H 1.08994 * 109.51027 * 303.15527 * 11 9 8 35 35 H 1.09004 * 109.50294 * 63.28727 * 11 9 8 36 36 H 1.09000 * 109.51000 * 61.26777 * 13 12 11 37 37 H 1.09003 * 109.50512 * 181.34676 * 13 12 11 38 38 H 1.09008 * 109.50504 * 296.91893 * 14 13 12 39 39 H 1.09001 * 109.50953 * 176.78916 * 14 13 12 40 40 H 1.09000 * 109.47020 * 167.57501 * 16 15 14 41 41 H 1.08994 * 109.47002 * 47.57216 * 16 15 14 42 42 H 0.97003 * 119.99510 * 0.27149 * 19 17 16 43 43 H 0.97004 * 120.00266 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0322 -0.7104 1.2305 6 8 1.3369 -1.5393 1.7786 7 7 3.2542 -0.4246 1.7221 8 6 3.7423 -1.1148 2.9186 9 6 5.0903 -0.5226 3.3347 10 1 5.5034 -1.1016 4.1607 11 6 4.8961 0.9305 3.7756 12 8 6.1687 1.5016 4.0918 13 6 7.0962 1.4788 3.0035 14 6 7.3127 0.0312 2.5546 15 7 6.0174 -0.5636 2.1945 16 6 6.1875 -1.9376 1.7034 17 6 6.8056 -1.9070 0.3293 18 8 7.0773 -0.8450 -0.1899 19 7 7.0611 -3.0598 -0.3205 20 6 7.6287 -3.0321 -1.5682 21 1 7.8714 -2.0865 -2.0302 22 6 7.8926 -4.2206 -2.2379 23 7 7.5977 -5.3711 -1.6756 24 14 8.6653 -4.1828 -3.9382 25 1 10.1444 -4.2158 -3.8106 26 1 8.2092 -5.3631 -4.7155 27 1 8.2566 -2.9398 -4.6402 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.8105 0.2381 1.2836 32 1 3.8630 -2.1762 2.7020 33 1 3.0244 -0.9886 3.7290 34 1 4.4334 1.4973 2.9678 35 1 4.2547 0.9610 4.6564 36 1 6.6975 2.0616 2.1731 37 1 8.0457 1.9066 3.3254 38 1 7.7614 -0.5389 3.3683 39 1 7.9746 0.0137 1.6888 40 1 5.2155 -2.4286 1.6536 41 1 6.8384 -2.4882 2.3824 42 1 6.8435 -3.9090 0.0946 43 1 7.7823 -6.2008 -2.1429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673027925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:36 Heat of formation + Delta-G solvation = -199.111387 kcal Electronic energy + Delta-G solvation = -30826.433944 eV Core-core repulsion = 26157.116563 eV Total energy + Delta-G solvation = -4669.317381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.24948 -47.24644 -40.39644 -39.37165 -38.02928 -36.13523 -34.63620 -33.79140 -31.87657 -31.40419 -31.27265 -29.12183 -27.22133 -25.62129 -24.62258 -23.83991 -22.54921 -20.97879 -20.00580 -19.24497 -18.78064 -17.92164 -17.85863 -16.93195 -16.80698 -16.25230 -15.91838 -15.85814 -15.25308 -15.17236 -14.81147 -14.69378 -14.46349 -14.14400 -14.09839 -13.81279 -13.58424 -13.55979 -13.43355 -13.35727 -12.97585 -12.77835 -12.59424 -12.32713 -12.09876 -12.05776 -11.78718 -11.55129 -11.42335 -11.17989 -10.91203 -10.55604 -10.40893 -10.24239 -10.14593 -9.80024 -9.51204 -9.24928 -8.60404 -8.09624 -7.98115 -6.43863 -3.84844 2.02607 2.52438 3.16201 3.25423 3.30989 3.56539 3.67411 3.77279 3.85250 3.86780 4.18451 4.35173 4.40162 4.54265 4.56694 4.91150 4.96994 5.13004 5.19542 5.20333 5.25233 5.33068 5.33325 5.37185 5.44956 5.59962 5.62268 5.69338 5.71552 5.80027 5.98967 6.05930 6.13308 6.20766 6.97867 6.98176 7.10352 7.16676 7.52999 7.74158 8.02857 8.57959 9.15364 9.50876 10.01785 10.73749 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.009109 B = 0.004392 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.108313 B = 6373.640735 C = 8376.620762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.281 3.719 3 F -0.189 7.189 4 F -0.176 7.176 5 C 0.485 3.515 6 O -0.512 6.512 7 N -0.694 5.694 8 C 0.124 3.876 9 C 0.030 3.970 10 H 0.069 0.931 11 C 0.072 3.928 12 O -0.386 6.386 13 C 0.064 3.936 14 C 0.022 3.978 15 N -0.509 5.509 16 C 0.038 3.962 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.562 5.562 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.420 0.580 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.037 0.963 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.391 0.609 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.186 10.009 10.592 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.241 3.759 3 F -0.171 7.171 4 F -0.157 7.157 5 C 0.266 3.734 6 O -0.388 6.388 7 N -0.346 5.346 8 C 0.000 4.000 9 C -0.079 4.079 10 H 0.087 0.913 11 C -0.006 4.006 12 O -0.305 6.305 13 C -0.013 4.013 14 C -0.105 4.105 15 N -0.235 5.235 16 C -0.093 4.093 17 C 0.229 3.771 18 O -0.462 6.462 19 N -0.199 5.199 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.258 0.742 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.055 0.945 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.224 0.776 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.575 10.306 10.347 18.031 hybrid contribution 1.017 -1.046 -0.626 1.587 sum -9.559 9.260 9.721 16.480 Atomic orbital electron populations 1.22626 0.89032 1.06716 1.05494 1.21317 0.95602 0.75693 0.83239 1.93063 1.90499 1.36782 1.96710 1.93148 1.90434 1.80602 1.51490 1.20741 0.82851 0.84064 0.85741 1.90762 1.56460 1.32553 1.59026 1.45905 1.16367 1.42954 1.29422 1.21519 0.94040 0.97213 0.87247 1.22670 0.93096 0.98466 0.93675 0.91328 1.22645 0.86016 0.91006 1.00893 1.87963 1.23559 1.81252 1.37681 1.22720 0.93163 0.95838 0.89548 1.22862 0.91310 0.95083 1.01264 1.61781 1.11576 1.19478 1.30658 1.22005 1.01622 0.88964 0.96682 1.19616 0.85222 0.85059 0.87221 1.90503 1.57070 1.29841 1.68739 1.41856 1.54449 1.06724 1.16835 1.19678 1.36210 0.94542 0.92398 0.87898 1.25260 0.97829 0.94656 1.00103 1.69608 1.47928 0.97578 1.39075 0.85864 0.79022 0.77945 0.81507 1.20427 1.20903 1.19378 0.88980 0.89168 0.88076 0.74170 0.90301 0.89837 0.92227 0.88424 0.91868 0.88489 0.94523 0.87369 0.89129 0.92970 0.77572 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.92 37.15 0.33 -1.34 16 2 C 0.28 3.57 2.47 -27.89 -0.07 3.50 16 3 F -0.19 -2.39 16.51 2.25 0.04 -2.35 16 4 F -0.18 -2.73 17.05 2.25 0.04 -2.69 16 5 C 0.49 6.65 7.23 -10.98 -0.08 6.57 16 6 O -0.51 -7.87 16.09 5.55 0.09 -7.78 16 7 N -0.69 -8.92 4.98 -60.30 -0.30 -9.22 16 8 C 0.12 1.40 4.72 -4.04 -0.02 1.38 16 9 C 0.03 0.35 2.25 -67.60 -0.15 0.19 16 10 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 11 C 0.07 0.76 6.21 37.21 0.23 0.99 16 12 O -0.39 -4.81 10.83 -35.23 -0.38 -5.20 16 13 C 0.06 0.79 7.01 37.21 0.26 1.05 16 14 C 0.02 0.33 5.31 -3.71 -0.02 0.31 16 15 N -0.51 -7.49 3.49 -227.77 -0.79 -8.28 16 16 C 0.04 0.64 5.30 -4.97 -0.03 0.62 16 17 C 0.44 10.04 7.51 -10.98 -0.08 9.95 16 18 O -0.58 -14.75 14.44 5.54 0.08 -14.67 16 19 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 20 C -0.30 -8.22 9.68 -14.94 -0.14 -8.37 16 21 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 23 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 24 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.95 7.87 -51.93 -0.41 0.54 16 31 H 0.42 5.71 6.99 -40.82 -0.29 5.43 16 32 H 0.08 0.96 6.38 -51.93 -0.33 0.63 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.64 7.28 -51.93 -0.38 0.27 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.11 1.88 6.44 -51.93 -0.33 1.55 16 40 H 0.09 1.44 5.65 -51.93 -0.29 1.15 16 41 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 42 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -31.82 361.83 -5.66 -37.49 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -5.66 Total: 13.66 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 0.13 Total: 15.38 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.43 Total: -55.27 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.21 Total: -27.64 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.08 Total: -5.04 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.82 -5.66 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673027925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.625 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds