Wall clock time and date at job start Tue Mar 31 2020 19:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39901 * 109.47362 * 2 1 4 4 F 1.39895 * 109.47136 * 239.99340 * 2 1 3 5 5 C 1.50701 * 109.46885 * 119.99863 * 2 1 3 6 6 O 1.21284 * 120.00543 * 24.99517 * 5 2 1 7 7 N 1.34784 * 120.00193 * 205.00065 * 5 2 1 8 8 C 1.46498 * 120.00198 * 179.97438 * 7 5 2 9 9 C 1.52996 * 109.47059 * 184.98597 * 8 7 5 10 10 H 1.09000 * 109.54320 * 185.82694 * 9 8 7 11 11 C 1.53095 * 109.50964 * 65.71301 * 9 8 7 12 12 O 1.43019 * 109.26059 * 183.21329 * 11 9 8 13 13 C 1.43017 * 113.73138 * 58.67615 * 12 11 9 14 14 C 1.53097 * 109.26071 * 301.32647 * 13 12 11 15 15 N 1.47009 * 109.25785 * 56.84939 * 14 13 12 16 16 C 1.46903 * 111.00095 * 177.60920 * 15 14 13 17 17 C 1.50703 * 109.47022 * 287.57155 * 16 15 14 18 18 O 1.21295 * 119.99759 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99931 * 179.72595 * 17 16 15 20 20 C 1.37093 * 120.00006 * 180.27520 * 19 17 16 21 21 H 1.08006 * 120.00278 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00022 * 179.97438 * 20 19 17 23 23 N 1.31406 * 119.99947 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99833 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46974 * 90.00592 * 24 22 20 26 26 H 1.48497 * 109.46946 * 210.00104 * 24 22 20 27 27 H 1.48491 * 109.47473 * 330.00504 * 24 22 20 28 28 H 1.09006 * 109.47137 * 300.00541 * 1 2 3 29 29 H 1.08996 * 109.46974 * 59.99799 * 1 2 3 30 30 H 1.09000 * 109.47252 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99440 * 359.97438 * 7 5 2 32 32 H 1.08999 * 109.47110 * 64.98726 * 8 7 5 33 33 H 1.08998 * 109.47060 * 304.98087 * 8 7 5 34 34 H 1.08994 * 109.51027 * 303.15527 * 11 9 8 35 35 H 1.09004 * 109.50294 * 63.28727 * 11 9 8 36 36 H 1.09000 * 109.51000 * 61.26777 * 13 12 11 37 37 H 1.09003 * 109.50512 * 181.34676 * 13 12 11 38 38 H 1.09008 * 109.50504 * 296.91893 * 14 13 12 39 39 H 1.09001 * 109.50953 * 176.78916 * 14 13 12 40 40 H 1.09000 * 109.47020 * 167.57501 * 16 15 14 41 41 H 1.08994 * 109.47002 * 47.57216 * 16 15 14 42 42 H 0.97003 * 119.99510 * 0.27149 * 19 17 16 43 43 H 0.97004 * 120.00266 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0322 -0.7104 1.2305 6 8 1.3369 -1.5393 1.7786 7 7 3.2542 -0.4246 1.7221 8 6 3.7423 -1.1148 2.9186 9 6 5.0903 -0.5226 3.3347 10 1 5.5034 -1.1016 4.1607 11 6 4.8961 0.9305 3.7756 12 8 6.1687 1.5016 4.0918 13 6 7.0962 1.4788 3.0035 14 6 7.3127 0.0312 2.5546 15 7 6.0174 -0.5636 2.1945 16 6 6.1875 -1.9376 1.7034 17 6 6.8056 -1.9070 0.3293 18 8 7.0773 -0.8450 -0.1899 19 7 7.0611 -3.0598 -0.3205 20 6 7.6287 -3.0321 -1.5682 21 1 7.8714 -2.0865 -2.0302 22 6 7.8926 -4.2206 -2.2379 23 7 7.5977 -5.3711 -1.6756 24 14 8.6653 -4.1828 -3.9382 25 1 10.1444 -4.2158 -3.8106 26 1 8.2092 -5.3631 -4.7155 27 1 8.2566 -2.9398 -4.6402 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.8105 0.2381 1.2836 32 1 3.8630 -2.1762 2.7020 33 1 3.0244 -0.9886 3.7290 34 1 4.4334 1.4973 2.9678 35 1 4.2547 0.9610 4.6564 36 1 6.6975 2.0616 2.1731 37 1 8.0457 1.9066 3.3254 38 1 7.7614 -0.5389 3.3683 39 1 7.9746 0.0137 1.6888 40 1 5.2155 -2.4286 1.6536 41 1 6.8384 -2.4882 2.3824 42 1 6.8435 -3.9090 0.0946 43 1 7.7823 -6.2008 -2.1429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673027925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:35 Heat of formation + Delta-G solvation = -224.012314 kcal Electronic energy + Delta-G solvation = -30827.513729 eV Core-core repulsion = 26157.116563 eV Total energy + Delta-G solvation = -4670.397167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.30505 -48.32092 -41.49200 -40.52757 -39.69497 -37.22423 -36.09671 -35.45640 -33.28087 -32.83064 -32.31599 -30.43512 -28.24744 -27.20960 -25.56304 -25.38174 -23.57461 -22.00626 -21.28281 -20.79272 -19.89728 -19.80736 -18.90806 -18.09240 -17.95061 -17.33198 -17.31312 -16.93846 -16.59806 -16.33323 -16.18173 -15.96081 -15.80566 -15.60442 -15.24208 -15.13597 -14.99110 -14.69209 -14.63621 -14.45174 -14.04855 -13.94636 -13.52945 -13.48813 -13.36036 -13.14081 -13.09574 -13.02766 -12.85098 -12.43300 -12.42411 -12.16448 -12.14024 -11.56858 -11.45061 -11.21247 -10.85576 -10.30057 -10.25440 -10.00759 -9.39142 -8.47189 -5.95543 0.95031 1.36429 1.40335 1.52571 1.53994 2.04283 2.24644 2.49101 2.67867 2.85676 2.92717 3.19106 3.29526 3.41207 3.45704 3.63628 3.64721 3.92347 4.11905 4.20988 4.23496 4.30943 4.41004 4.45963 4.50307 4.53655 4.57438 4.65732 4.73923 4.77595 4.90328 4.92109 4.97932 5.10612 5.40129 5.72021 5.91345 6.03093 6.06356 6.14936 6.59008 6.67605 7.12477 7.55661 8.10758 8.70282 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.009109 B = 0.004392 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.108313 B = 6373.640735 C = 8376.620762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.274 3.726 3 F -0.190 7.190 4 F -0.197 7.197 5 C 0.483 3.517 6 O -0.530 6.530 7 N -0.693 5.693 8 C 0.122 3.878 9 C 0.038 3.962 10 H 0.085 0.915 11 C 0.071 3.929 12 O -0.390 6.390 13 C 0.071 3.929 14 C 0.025 3.975 15 N -0.523 5.523 16 C 0.053 3.947 17 C 0.444 3.556 18 O -0.609 6.609 19 N -0.576 5.576 20 C -0.329 4.329 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.270 1.270 26 H -0.273 1.273 27 H -0.273 1.273 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.416 0.584 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.128 0.872 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.393 0.607 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.964 10.379 11.879 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.234 3.766 3 F -0.171 7.171 4 F -0.178 7.178 5 C 0.264 3.736 6 O -0.408 6.408 7 N -0.344 5.344 8 C -0.001 4.001 9 C -0.071 4.071 10 H 0.103 0.897 11 C -0.006 4.006 12 O -0.309 6.309 13 C -0.005 4.005 14 C -0.103 4.103 15 N -0.249 5.249 16 C -0.078 4.078 17 C 0.231 3.769 18 O -0.494 6.494 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.814 3.186 25 H -0.195 1.195 26 H -0.197 1.197 27 H -0.198 1.198 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.254 0.746 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.072 0.928 37 H 0.134 0.866 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.227 0.773 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.355 10.680 11.665 19.469 hybrid contribution 1.250 -1.091 -0.963 1.919 sum -10.105 9.589 10.701 17.566 Atomic orbital electron populations 1.22677 0.86179 1.07140 1.07284 1.21680 0.97543 0.75298 0.82061 1.93057 1.90735 1.36695 1.96632 1.93103 1.90910 1.81127 1.52656 1.20917 0.82902 0.83876 0.85922 1.90748 1.56956 1.33334 1.59731 1.46001 1.16013 1.42663 1.29763 1.21649 0.94539 0.96509 0.87364 1.22735 0.92106 0.99568 0.92681 0.89693 1.22829 0.85666 0.89969 1.02179 1.87968 1.24108 1.81330 1.37468 1.22662 0.94196 0.94192 0.89485 1.22777 0.90757 0.96751 1.00008 1.61708 1.12300 1.18013 1.32860 1.21795 1.01861 0.90878 0.93232 1.20646 0.83552 0.83837 0.88867 1.90480 1.57894 1.30908 1.70155 1.41938 1.55304 1.07526 1.16573 1.19628 1.38101 0.94102 0.94025 0.90232 1.26008 0.97861 0.94049 1.03350 1.69672 1.48321 0.97966 1.40333 0.84961 0.78475 0.77890 0.77234 1.19514 1.19744 1.19828 0.87212 0.87411 0.88280 0.74647 0.91079 0.87395 0.92560 0.85417 0.92786 0.86589 0.93532 0.90889 0.87921 0.91155 0.77318 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.92 71.98 0.64 -2.34 16 2 C 0.27 6.76 2.47 29.85 0.07 6.84 16 3 F -0.19 -4.66 16.51 44.97 0.74 -3.92 16 4 F -0.20 -6.16 17.05 44.97 0.77 -5.39 16 5 C 0.48 12.77 7.23 87.66 0.63 13.41 16 6 O -0.53 -15.67 16.09 -3.04 -0.05 -15.72 16 7 N -0.69 -16.99 4.98 -463.06 -2.31 -19.30 16 8 C 0.12 2.50 4.72 86.38 0.41 2.91 16 9 C 0.04 0.77 2.25 44.92 0.10 0.87 16 10 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 11 C 0.07 1.30 6.21 72.01 0.45 1.74 16 12 O -0.39 -8.73 10.83 -148.98 -1.61 -10.34 16 13 C 0.07 1.68 7.01 72.01 0.50 2.18 16 14 C 0.02 0.70 5.31 86.31 0.46 1.16 16 15 N -0.52 -14.82 3.49 -874.54 -3.05 -17.87 16 16 C 0.05 1.75 5.30 85.56 0.45 2.21 16 17 C 0.44 20.48 7.51 87.66 0.66 21.13 16 18 O -0.61 -32.09 14.44 -3.08 -0.04 -32.14 16 19 N -0.58 -29.39 5.29 -306.98 -1.62 -31.01 16 20 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 24 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 28 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 1.75 7.87 -2.39 -0.02 1.73 16 31 H 0.42 11.03 6.99 -92.71 -0.65 10.38 16 32 H 0.07 1.60 6.38 -2.39 -0.02 1.59 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.09 7.28 -2.39 -0.02 1.08 16 35 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.07 2.60 6.44 -2.39 -0.02 2.58 16 40 H 0.10 3.16 5.65 -2.39 -0.01 3.15 16 41 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 42 H 0.39 19.34 7.90 -92.71 -0.73 18.61 16 43 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -69.55 361.83 0.49 -69.06 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: -0.31 Total: 39.15 kcal Atomic # 6 Polarization: 26.40 SS G_CDS: 5.66 Total: 32.06 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -6.70 Total: -118.07 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -1.71 Total: -58.20 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 1.51 Total: -9.30 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -69.55 0.49 -69.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673027925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.949 kcal (2) G-P(sol) polarization free energy of solvation -69.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds