Wall clock time and date at job start Tue Mar 31 2020 19:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46840 * 2 1 4 4 C 1.50697 * 109.47485 * 239.99975 * 2 1 3 5 5 O 1.21287 * 120.00014 * 274.86820 * 4 2 1 6 6 N 1.34776 * 120.00406 * 94.86720 * 4 2 1 7 7 C 1.47066 * 120.79917 * 174.75195 * 6 4 2 8 8 C 1.53299 * 108.60698 * 115.30784 * 7 6 4 9 9 C 1.50987 * 108.95831 * 45.06195 * 8 7 6 10 10 S 1.75965 * 126.02850 * 162.31414 * 9 8 7 11 11 C 1.70905 * 90.30569 * 179.63210 * 10 9 8 12 12 C 1.50697 * 124.92202 * 180.08506 * 11 10 9 13 13 N 1.46502 * 109.47399 * 269.99942 * 12 11 10 14 14 C 1.36932 * 119.99967 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00232 * 0.02562 * 14 13 12 16 16 C 1.38808 * 119.99687 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00335 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00075 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46623 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47281 * 120.00150 * 18 16 14 21 21 H 1.48501 * 109.47321 * 240.00598 * 18 16 14 22 22 N 1.28673 * 110.14637 * 0.06778 * 11 10 9 23 23 C 1.32440 * 117.82768 * 0.07620 * 22 11 10 24 24 C 1.47032 * 120.79455 * 354.77501 * 6 4 2 25 25 C 1.53003 * 109.46877 * 119.99738 * 2 1 3 26 26 C 1.53004 * 117.49689 * 248.62461 * 25 2 1 27 27 C 1.53003 * 117.49383 * 180.02562 * 25 2 1 28 28 H 1.09002 * 109.46978 * 184.99424 * 1 2 3 29 29 H 1.09000 * 109.47513 * 304.99455 * 1 2 3 30 30 H 1.09008 * 109.47310 * 64.99774 * 1 2 3 31 31 H 1.08997 * 109.60819 * 355.57347 * 7 6 4 32 32 H 1.09000 * 109.61337 * 235.04580 * 7 6 4 33 33 H 1.08994 * 109.55648 * 285.21679 * 8 7 6 34 34 H 1.08996 * 109.55011 * 164.90102 * 8 7 6 35 35 H 1.09000 * 109.47253 * 30.00463 * 12 11 10 36 36 H 1.09005 * 109.46566 * 150.00300 * 12 11 10 37 37 H 0.97000 * 119.99483 * 0.02562 * 13 12 11 38 38 H 0.97000 * 120.00014 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.82258 * 105.67534 * 24 6 4 40 40 H 1.09006 * 109.81413 * 344.76685 * 24 6 4 41 41 H 1.08991 * 115.55000 * 34.33436 * 25 2 1 42 42 H 1.08997 * 117.49872 * 359.97438 * 26 25 2 43 43 H 1.08991 * 117.50110 * 145.02236 * 26 25 2 44 44 H 1.09003 * 117.49510 * 214.97873 * 27 25 2 45 45 H 1.09000 * 117.50216 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.1505 -1.9175 -1.2280 6 7 2.3504 -0.0044 -2.3336 7 6 2.9496 -0.6646 -3.5032 8 6 1.9699 -0.5621 -4.6779 9 6 1.4293 0.8461 -4.7444 10 16 0.6347 1.5854 -6.1294 11 6 0.4257 3.0345 -5.2477 12 6 -0.2386 4.2788 -5.7780 13 7 0.7663 5.1378 -6.4093 14 6 0.3939 6.3322 -6.9658 15 1 -0.6406 6.6413 -6.9389 16 6 1.3462 7.1462 -7.5634 17 7 2.6071 6.7698 -7.5957 18 14 0.8384 8.7761 -8.3220 19 1 -0.6249 8.9653 -8.1546 20 1 1.5609 9.8833 -7.6457 21 1 1.1756 8.7754 -9.7682 22 7 0.9175 2.9086 -4.0653 23 6 1.4719 1.7489 -3.7466 24 6 2.1072 1.4443 -2.3963 25 6 2.0399 -0.7212 1.2493 26 6 2.7417 0.1228 2.3152 27 6 3.5550 -0.8275 1.4346 28 1 -0.3633 -1.0238 0.0895 29 1 -0.3634 0.5893 0.8418 30 1 -0.3634 0.4344 -0.9314 31 1 3.1382 -1.7134 -3.2746 32 1 3.8854 -0.1699 -3.7631 33 1 1.1476 -1.2619 -4.5293 34 1 2.4885 -0.7981 -5.6070 35 1 -0.9940 4.0022 -6.5135 36 1 -0.7116 4.8165 -4.9561 37 1 1.6955 4.8603 -6.4330 38 1 3.2724 7.3386 -8.0137 39 1 3.0507 1.9819 -2.3022 40 1 1.4307 1.7404 -1.5945 41 1 1.4310 -1.5584 1.5902 42 1 2.8405 1.1917 2.1262 43 1 2.5945 -0.1590 3.3577 44 1 3.9429 -1.7348 1.8977 45 1 4.1883 -0.3840 0.6663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707278634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:06 Heat of formation + Delta-G solvation = 47.726739 kcal Electronic energy + Delta-G solvation = -26226.249485 eV Core-core repulsion = 22564.618209 eV Total energy + Delta-G solvation = -3661.631276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.86401 -39.52792 -37.59827 -36.38708 -34.69398 -33.33373 -31.95803 -31.49101 -29.81361 -26.84436 -26.39554 -24.85780 -23.73622 -23.22994 -22.63172 -21.93225 -21.13337 -19.42113 -18.26255 -18.08514 -17.31238 -16.88176 -16.53122 -15.88297 -15.35727 -15.01566 -14.91458 -14.68111 -14.33463 -14.21451 -13.69584 -13.61573 -13.52360 -13.06810 -12.95734 -12.66753 -12.58783 -12.41403 -12.27954 -12.04353 -11.83676 -11.82293 -11.56466 -11.30188 -11.07865 -10.98312 -10.87944 -10.70871 -10.48181 -10.13729 -9.86685 -9.76790 -9.35168 -9.10010 -8.96928 -8.91374 -8.45856 -7.05822 -5.83752 -3.15301 0.86515 1.51400 1.97309 2.38208 2.59715 2.88876 3.40072 3.45598 3.47989 3.49454 4.06105 4.19055 4.27579 4.54294 4.55471 4.61922 4.70320 4.77764 4.85339 4.93917 4.98909 5.02249 5.15571 5.22382 5.25035 5.34204 5.36434 5.44315 5.49268 5.50854 5.58823 5.63116 5.68007 5.77130 5.79228 5.82893 5.95539 5.96293 6.13191 6.15758 6.38972 6.43772 7.09939 7.62357 7.90627 7.98641 8.31803 9.44430 9.95220 10.31618 11.38579 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018207 B = 0.002524 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.498269 B =11090.973718 C =11770.815488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 H 0.094 0.906 4 C 0.530 3.470 5 O -0.533 6.533 6 N -0.614 5.614 7 C 0.115 3.885 8 C -0.053 4.053 9 C -0.236 4.236 10 S 0.136 5.864 11 C 0.076 3.924 12 C 0.224 3.776 13 N -0.723 5.723 14 C -0.244 4.244 15 H 0.075 0.925 16 C -0.010 4.010 17 N -0.929 5.929 18 Si 0.911 3.089 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.291 1.291 22 N -0.464 5.464 23 C 0.046 3.954 24 C 0.191 3.809 25 C -0.133 4.133 26 C -0.177 4.177 27 C -0.173 4.173 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.993 -17.543 14.973 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 H 0.112 0.888 4 C 0.318 3.682 5 O -0.409 6.409 6 N -0.348 5.348 7 C -0.008 4.008 8 C -0.093 4.093 9 C -0.358 4.358 10 S 0.394 5.606 11 C -0.203 4.203 12 C 0.094 3.906 13 N -0.369 5.369 14 C -0.375 4.375 15 H 0.093 0.907 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.742 3.258 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.218 1.218 22 N -0.178 5.178 23 C -0.087 4.087 24 C 0.066 3.934 25 C -0.152 4.152 26 C -0.214 4.214 27 C -0.210 4.210 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.367 -17.901 14.216 22.900 hybrid contribution 0.529 0.903 0.158 1.059 sum -0.838 -16.998 14.374 22.276 Atomic orbital electron populations 1.21708 0.91879 1.03165 1.02923 1.20979 0.98141 0.99827 0.91469 0.88787 1.20596 0.76390 0.87470 0.83722 1.90672 1.52988 1.13924 1.83339 1.48131 1.62612 1.08531 1.15484 1.21650 0.95313 0.99950 0.83935 1.20457 0.99189 0.90199 0.99459 1.25842 1.10751 1.01996 0.97209 1.83968 1.52736 1.07628 1.16242 1.27301 1.01136 1.00402 0.91501 1.19341 0.91439 0.84228 0.95625 1.42272 1.06231 1.20287 1.68120 1.19242 0.93938 0.94887 1.29414 0.90682 1.24781 0.95360 0.99075 1.01413 1.69687 1.00451 1.38248 1.49326 0.86062 0.77644 0.83472 0.78633 1.20391 1.21744 1.21757 1.65769 1.11829 1.22284 1.17891 1.20801 1.02003 0.88771 0.97166 1.20270 1.00458 0.79938 0.92768 1.22009 0.95582 1.01727 0.95878 1.23078 1.04292 0.97690 0.96337 1.22890 0.93623 1.01657 1.02877 0.91645 0.90936 0.91950 0.87980 0.90396 0.89941 0.89236 0.93958 0.92853 0.77950 0.93394 0.89086 0.87757 0.87131 0.88562 0.88568 0.88649 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.01 37.16 0.33 -0.82 16 2 C -0.08 -0.74 2.06 -91.77 -0.19 -0.93 16 3 H 0.09 0.74 6.12 -51.93 -0.32 0.42 16 4 C 0.53 6.07 6.34 -10.99 -0.07 6.00 16 5 O -0.53 -7.62 15.90 5.55 0.09 -7.53 16 6 N -0.61 -6.75 2.92 -173.04 -0.50 -7.25 16 7 C 0.12 1.18 6.40 -3.58 -0.02 1.16 16 8 C -0.05 -0.56 6.44 -27.59 -0.18 -0.74 16 9 C -0.24 -3.27 6.43 -35.45 -0.23 -3.49 16 10 S 0.14 2.06 23.17 -107.50 -2.49 -0.43 16 11 C 0.08 1.38 6.75 -13.60 -0.09 1.29 16 12 C 0.22 4.55 6.84 -5.19 -0.04 4.52 16 13 N -0.72 -18.29 5.59 -61.09 -0.34 -18.64 16 14 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 15 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 18 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 N -0.46 -8.24 10.51 -7.28 -0.08 -8.31 16 23 C 0.05 0.68 6.87 -82.81 -0.57 0.11 16 24 C 0.19 2.18 6.34 -4.11 -0.03 2.15 16 25 C -0.13 -1.14 4.67 -90.61 -0.42 -1.56 16 26 C -0.18 -1.25 10.17 -26.75 -0.27 -1.52 16 27 C -0.17 -1.46 9.86 -26.75 -0.26 -1.72 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.57 7.90 -51.92 -0.41 0.16 16 31 H 0.10 1.04 7.04 -51.93 -0.37 0.67 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.39 10.52 7.66 -40.82 -0.31 10.21 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.10 1.05 5.65 -51.93 -0.29 0.75 16 41 H 0.11 0.96 8.11 -51.93 -0.42 0.54 16 42 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -32.46 381.94 -10.88 -43.35 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.74 Total: 6.02 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.28 Total: -2.79 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.20 Total: -61.37 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.09 Total: -7.53 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.49 Total: -0.43 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.46 -10.88 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707278634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.076 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds