Wall clock time and date at job start Tue Mar 31 2020 19:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46840 * 2 1 4 4 C 1.50697 * 109.47485 * 239.99975 * 2 1 3 5 5 O 1.21287 * 120.00014 * 274.86820 * 4 2 1 6 6 N 1.34776 * 120.00406 * 94.86720 * 4 2 1 7 7 C 1.47066 * 120.79917 * 174.75195 * 6 4 2 8 8 C 1.53299 * 108.60698 * 115.30784 * 7 6 4 9 9 C 1.50987 * 108.95831 * 45.06195 * 8 7 6 10 10 S 1.75965 * 126.02850 * 162.31414 * 9 8 7 11 11 C 1.70905 * 90.30569 * 179.63210 * 10 9 8 12 12 C 1.50697 * 124.92202 * 180.08506 * 11 10 9 13 13 N 1.46502 * 109.47399 * 269.99942 * 12 11 10 14 14 C 1.36932 * 119.99967 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00232 * 0.02562 * 14 13 12 16 16 C 1.38808 * 119.99687 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00335 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00075 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46623 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47281 * 120.00150 * 18 16 14 21 21 H 1.48501 * 109.47321 * 240.00598 * 18 16 14 22 22 N 1.28673 * 110.14637 * 0.06778 * 11 10 9 23 23 C 1.32440 * 117.82768 * 0.07620 * 22 11 10 24 24 C 1.47032 * 120.79455 * 354.77501 * 6 4 2 25 25 C 1.53003 * 109.46877 * 119.99738 * 2 1 3 26 26 C 1.53004 * 117.49689 * 248.62461 * 25 2 1 27 27 C 1.53003 * 117.49383 * 180.02562 * 25 2 1 28 28 H 1.09002 * 109.46978 * 184.99424 * 1 2 3 29 29 H 1.09000 * 109.47513 * 304.99455 * 1 2 3 30 30 H 1.09008 * 109.47310 * 64.99774 * 1 2 3 31 31 H 1.08997 * 109.60819 * 355.57347 * 7 6 4 32 32 H 1.09000 * 109.61337 * 235.04580 * 7 6 4 33 33 H 1.08994 * 109.55648 * 285.21679 * 8 7 6 34 34 H 1.08996 * 109.55011 * 164.90102 * 8 7 6 35 35 H 1.09000 * 109.47253 * 30.00463 * 12 11 10 36 36 H 1.09005 * 109.46566 * 150.00300 * 12 11 10 37 37 H 0.97000 * 119.99483 * 0.02562 * 13 12 11 38 38 H 0.97000 * 120.00014 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.82258 * 105.67534 * 24 6 4 40 40 H 1.09006 * 109.81413 * 344.76685 * 24 6 4 41 41 H 1.08991 * 115.55000 * 34.33436 * 25 2 1 42 42 H 1.08997 * 117.49872 * 359.97438 * 26 25 2 43 43 H 1.08991 * 117.50110 * 145.02236 * 26 25 2 44 44 H 1.09003 * 117.49510 * 214.97873 * 27 25 2 45 45 H 1.09000 * 117.50216 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.1505 -1.9175 -1.2280 6 7 2.3504 -0.0044 -2.3336 7 6 2.9496 -0.6646 -3.5032 8 6 1.9699 -0.5621 -4.6779 9 6 1.4293 0.8461 -4.7444 10 16 0.6347 1.5854 -6.1294 11 6 0.4257 3.0345 -5.2477 12 6 -0.2386 4.2788 -5.7780 13 7 0.7663 5.1378 -6.4093 14 6 0.3939 6.3322 -6.9658 15 1 -0.6406 6.6413 -6.9389 16 6 1.3462 7.1462 -7.5634 17 7 2.6071 6.7698 -7.5957 18 14 0.8384 8.7761 -8.3220 19 1 -0.6249 8.9653 -8.1546 20 1 1.5609 9.8833 -7.6457 21 1 1.1756 8.7754 -9.7682 22 7 0.9175 2.9086 -4.0653 23 6 1.4719 1.7489 -3.7466 24 6 2.1072 1.4443 -2.3963 25 6 2.0399 -0.7212 1.2493 26 6 2.7417 0.1228 2.3152 27 6 3.5550 -0.8275 1.4346 28 1 -0.3633 -1.0238 0.0895 29 1 -0.3634 0.5893 0.8418 30 1 -0.3634 0.4344 -0.9314 31 1 3.1382 -1.7134 -3.2746 32 1 3.8854 -0.1699 -3.7631 33 1 1.1476 -1.2619 -4.5293 34 1 2.4885 -0.7981 -5.6070 35 1 -0.9940 4.0022 -6.5135 36 1 -0.7116 4.8165 -4.9561 37 1 1.6955 4.8603 -6.4330 38 1 3.2724 7.3386 -8.0137 39 1 3.0507 1.9819 -2.3022 40 1 1.4307 1.7404 -1.5945 41 1 1.4310 -1.5584 1.5902 42 1 2.8405 1.1917 2.1262 43 1 2.5945 -0.1590 3.3577 44 1 3.9429 -1.7348 1.8977 45 1 4.1883 -0.3840 0.6663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707278634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:06 Heat of formation + Delta-G solvation = 28.205085 kcal Electronic energy + Delta-G solvation = -26227.096007 eV Core-core repulsion = 22564.618209 eV Total energy + Delta-G solvation = -3662.477799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81664 -40.62144 -38.35912 -37.44990 -36.45209 -34.20077 -33.51500 -32.57271 -31.15503 -28.43689 -27.34491 -25.64738 -25.39205 -24.29315 -23.37976 -23.18365 -21.98188 -20.40668 -19.58947 -19.16328 -18.94724 -17.91824 -17.41009 -16.86236 -16.72442 -16.26500 -15.87889 -15.75322 -15.51349 -15.30953 -15.04092 -14.94120 -14.78705 -14.18975 -14.03567 -13.84724 -13.70836 -13.41735 -13.18859 -13.07835 -12.97086 -12.80761 -12.75648 -12.49165 -12.39164 -12.15211 -12.08087 -11.99045 -11.87071 -11.40088 -11.11162 -11.05131 -10.64181 -10.57618 -10.23134 -9.89645 -9.64321 -9.10072 -7.97304 -5.29399 -0.37426 0.30883 0.73748 1.48932 1.49473 1.50415 1.60323 1.64855 1.75520 2.55734 2.81381 2.96932 3.37674 3.48028 3.54231 3.68482 3.79165 3.84184 3.91601 4.06452 4.11099 4.15926 4.18633 4.24643 4.27945 4.34557 4.46431 4.51728 4.57043 4.69163 4.76799 4.79055 4.81568 4.82921 4.84460 4.91998 5.04456 5.13039 5.15335 5.24761 5.28246 5.31725 5.47962 6.20958 6.21544 6.72247 7.04019 7.28944 7.94665 8.21855 9.26204 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018207 B = 0.002524 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.498269 B =11090.973718 C =11770.815488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 H 0.108 0.892 4 C 0.529 3.471 5 O -0.565 6.565 6 N -0.612 5.612 7 C 0.113 3.887 8 C -0.050 4.050 9 C -0.224 4.224 10 S 0.162 5.838 11 C 0.038 3.962 12 C 0.227 3.773 13 N -0.736 5.736 14 C -0.246 4.246 15 H 0.085 0.915 16 C -0.073 4.073 17 N -0.969 5.969 18 Si 0.979 3.021 19 H -0.262 1.262 20 H -0.294 1.294 21 H -0.292 1.292 22 N -0.479 5.479 23 C 0.028 3.972 24 C 0.196 3.804 25 C -0.144 4.144 26 C -0.159 4.159 27 C -0.185 4.185 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.373 0.627 38 H 0.252 0.748 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 -17.942 15.779 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 H 0.126 0.874 4 C 0.319 3.681 5 O -0.443 6.443 6 N -0.345 5.345 7 C -0.010 4.010 8 C -0.091 4.091 9 C -0.346 4.346 10 S 0.420 5.580 11 C -0.240 4.240 12 C 0.098 3.902 13 N -0.380 5.380 14 C -0.378 4.378 15 H 0.103 0.897 16 C -0.265 4.265 17 N -0.619 5.619 18 Si 0.807 3.193 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.219 1.219 22 N -0.194 5.194 23 C -0.105 4.105 24 C 0.071 3.929 25 C -0.162 4.162 26 C -0.196 4.196 27 C -0.222 4.222 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.205 0.795 38 H 0.061 0.939 39 H 0.119 0.881 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.114 0.886 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.885 -18.301 15.033 23.758 hybrid contribution 0.662 0.873 -0.051 1.097 sum -1.223 -17.428 14.981 23.015 Atomic orbital electron populations 1.21690 0.91354 1.03032 1.03220 1.21026 0.98475 1.00203 0.90462 0.87446 1.21037 0.75624 0.87149 0.84300 1.90656 1.54406 1.15303 1.83908 1.48183 1.62253 1.08389 1.15713 1.21738 0.95544 1.00257 0.83491 1.20599 0.99585 0.88150 1.00717 1.26313 1.09078 1.03102 0.96142 1.83773 1.52334 1.05828 1.16112 1.26854 1.03392 1.01074 0.92665 1.19302 0.90741 0.84754 0.95431 1.42431 1.06513 1.20519 1.68512 1.19678 0.94336 0.95451 1.28288 0.89709 1.25635 0.95432 1.02720 1.02719 1.69845 1.01536 1.39588 1.50951 0.85003 0.78025 0.79019 0.77235 1.18625 1.22145 1.21931 1.65728 1.11718 1.23880 1.18076 1.21244 1.02353 0.88104 0.98798 1.20347 1.00977 0.80135 0.91464 1.22010 0.95541 1.02291 0.96383 1.23154 1.02125 0.97806 0.96516 1.22918 0.93491 1.02364 1.03475 0.92306 0.89128 0.92813 0.87738 0.89333 0.89350 0.87191 0.92567 0.93214 0.79518 0.93899 0.88090 0.86379 0.87582 0.87699 0.87301 0.88605 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.01 71.98 0.65 -1.40 16 2 C -0.08 -1.32 2.06 -11.54 -0.02 -1.34 16 3 H 0.11 1.45 6.12 -2.39 -0.01 1.43 16 4 C 0.53 11.46 6.34 87.66 0.56 12.01 16 5 O -0.56 -15.70 15.90 -3.05 -0.05 -15.75 16 6 N -0.61 -12.47 2.92 -819.77 -2.39 -14.87 16 7 C 0.11 2.11 6.40 86.37 0.55 2.67 16 8 C -0.05 -0.96 6.44 30.04 0.19 -0.77 16 9 C -0.22 -5.86 6.43 24.95 0.16 -5.70 16 10 S 0.16 4.74 23.17 -56.49 -1.31 3.43 16 11 C 0.04 1.38 6.75 88.57 0.60 1.98 16 12 C 0.23 9.24 6.84 85.63 0.59 9.83 16 13 N -0.74 -37.61 5.59 -347.18 -1.94 -39.56 16 14 C -0.25 -13.52 9.99 84.03 0.84 -12.68 16 15 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 16 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 17 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 18 Si 0.98 45.39 29.55 68.60 2.03 47.41 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 N -0.48 -16.81 10.51 -176.96 -1.86 -18.67 16 23 C 0.03 0.80 6.87 42.15 0.29 1.09 16 24 C 0.20 4.14 6.34 86.05 0.55 4.68 16 25 C -0.14 -2.25 4.67 -10.79 -0.05 -2.30 16 26 C -0.16 -1.91 10.17 30.58 0.31 -1.59 16 27 C -0.19 -2.90 9.86 30.58 0.30 -2.60 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.90 7.90 -2.38 -0.02 0.88 16 31 H 0.10 1.96 7.04 -2.39 -0.02 1.94 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.37 20.75 7.66 -92.71 -0.71 20.04 16 38 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.12 2.15 5.65 -2.38 -0.01 2.14 16 41 H 0.11 1.75 8.11 -2.39 -0.02 1.73 16 42 H 0.10 1.09 8.05 -2.39 -0.02 1.07 16 43 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -69.70 381.94 1.03 -68.66 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.30 Total: 27.94 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.97 Total: 0.22 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -5.91 Total: -131.92 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.05 Total: -15.75 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -1.31 Total: 3.43 kcal Total: -69.70 1.03 -68.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707278634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.867 kcal (2) G-P(sol) polarization free energy of solvation -69.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds