Wall clock time and date at job start Tue Mar 31 2020 19:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.31070 * 2 1 4 4 C 1.54395 * 110.34257 * 122.28651 * 2 1 3 5 5 N 1.48427 * 104.65420 * 142.73646 * 4 2 1 6 6 C 1.34781 * 127.98028 * 140.36956 * 5 4 2 7 7 O 1.21633 * 120.00178 * 180.09068 * 6 5 4 8 8 C 1.47265 * 119.99974 * 0.08782 * 6 5 4 9 9 C 1.35207 * 123.13709 * 179.70281 * 8 6 5 10 10 S 1.70944 * 108.82277 * 179.90712 * 9 8 6 11 11 C 1.70766 * 91.13259 * 0.30434 * 10 9 8 12 12 C 1.50701 * 124.72383 * 179.82079 * 11 10 9 13 13 C 1.52995 * 117.49581 * 8.74671 * 12 11 10 14 14 C 1.52996 * 117.49771 * 300.08541 * 12 11 10 15 15 N 1.28655 * 110.55607 * 359.82418 * 11 10 9 16 16 C 1.48146 * 104.18376 * 320.44270 * 5 4 2 17 17 C 1.54289 * 110.34289 * 237.81998 * 2 1 3 18 18 H 1.08998 * 110.43086 * 0.05057 * 17 2 1 19 19 C 1.52998 * 110.34096 * 122.26350 * 17 2 1 20 20 N 1.46497 * 109.47193 * 181.99223 * 19 17 2 21 21 C 1.36933 * 120.00260 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99857 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00176 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00061 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00040 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47005 * 89.99848 * 25 23 21 27 27 H 1.48498 * 109.46939 * 209.99838 * 25 23 21 28 28 H 1.48503 * 109.46939 * 329.99717 * 25 23 21 29 29 H 1.08998 * 109.46918 * 182.17573 * 1 2 3 30 30 H 1.08996 * 109.47141 * 302.17779 * 1 2 3 31 31 H 1.08996 * 109.46540 * 62.17666 * 1 2 3 32 32 H 1.09004 * 110.40266 * 261.52401 * 4 2 1 33 33 H 1.09006 * 110.40687 * 23.83270 * 4 2 1 34 34 H 1.08000 * 125.59437 * 0.02938 * 9 8 6 35 35 H 1.08996 * 115.54807 * 154.41777 * 12 11 10 36 36 H 1.08998 * 117.50233 * 0.02562 * 13 12 11 37 37 H 1.09004 * 117.49301 * 145.02375 * 13 12 11 38 38 H 1.08997 * 117.49981 * 214.97640 * 14 12 11 39 39 H 1.09000 * 117.50049 * 359.97438 * 14 12 11 40 40 H 1.09002 * 110.40776 * 280.72897 * 16 5 4 41 41 H 1.09002 * 110.40863 * 158.41306 * 16 5 4 42 42 H 1.09005 * 109.46850 * 301.99165 * 19 17 2 43 43 H 1.08998 * 109.47834 * 61.98951 * 19 17 2 44 44 H 0.97000 * 120.00162 * 359.97438 * 20 19 17 45 45 H 0.96998 * 120.00067 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0667 -0.7733 1.2238 5 7 3.2688 -1.4842 0.7212 6 6 4.4460 -1.6704 1.3506 7 8 5.3418 -2.2794 0.7974 8 6 4.6477 -1.1365 2.7082 9 6 5.7991 -1.2912 3.3997 10 16 5.6348 -0.5307 4.9218 11 6 4.0363 -0.0581 4.5510 12 6 3.1352 0.7206 5.4745 13 6 3.7555 1.2909 6.7515 14 6 2.8031 0.0951 6.8306 15 7 3.7082 -0.4594 3.3735 16 6 2.8802 -1.9417 -0.6332 17 6 2.0664 -0.7705 -1.2244 18 1 1.2410 -1.1488 -1.8274 19 6 2.9693 0.1325 -2.0672 20 7 3.4292 -0.6023 -3.2482 21 6 4.2544 0.0070 -4.1553 22 1 4.5659 1.0295 -4.0003 23 6 4.6897 -0.6890 -5.2747 24 7 4.3098 -1.9349 -5.4638 25 14 5.8160 0.1420 -6.5118 26 1 7.2313 -0.0880 -6.1252 27 1 5.5731 -0.4262 -7.8620 28 1 5.5390 1.6008 -6.5314 29 1 -0.3633 -1.0269 0.0390 30 1 -0.3633 0.5473 0.8698 31 1 -0.3632 0.4797 -0.9089 32 1 2.3400 -0.0814 2.0206 33 1 1.3226 -1.4862 1.5792 34 1 6.6793 -1.8086 3.0475 35 1 2.3571 1.3080 4.9871 36 1 4.8153 1.1033 6.9235 37 1 3.3850 2.2533 7.1045 38 1 1.8067 0.2713 7.2357 39 1 3.2360 -0.8799 7.0548 40 1 2.2639 -2.8385 -0.5691 41 1 3.7662 -2.1327 -1.2387 42 1 2.4099 1.0133 -2.3824 43 1 3.8298 0.4417 -1.4739 44 1 3.1492 -1.5205 -3.3877 45 1 4.6137 -2.4212 -6.2462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716997867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:46 Heat of formation + Delta-G solvation = 32.380363 kcal Electronic energy + Delta-G solvation = -26512.580716 eV Core-core repulsion = 22850.283971 eV Total energy + Delta-G solvation = -3662.296745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80962 -40.39159 -39.08403 -37.92124 -36.45534 -34.13455 -33.13563 -31.67900 -30.67577 -28.04690 -27.26276 -26.61722 -25.39490 -24.11825 -23.28615 -22.49247 -21.51758 -20.87861 -20.46115 -19.47282 -19.06285 -17.54920 -17.25683 -17.09692 -16.72453 -16.64802 -16.06887 -15.63755 -15.40644 -15.22893 -15.07586 -14.84951 -14.69046 -14.25685 -14.00684 -13.69633 -13.34751 -13.27873 -13.19471 -12.91976 -12.84384 -12.76619 -12.63692 -12.36554 -12.17350 -12.00274 -11.92263 -11.84822 -11.57877 -11.47978 -11.38480 -11.30158 -10.99659 -10.67259 -10.55378 -10.00482 -9.67040 -9.05461 -7.99458 -5.28781 -0.60451 0.14876 0.49399 0.78804 1.41343 1.45001 1.52964 1.87974 2.15833 2.51650 2.68491 2.99511 3.33069 3.41694 3.58595 3.68532 3.78650 3.84473 4.00602 4.05090 4.09506 4.18053 4.24106 4.37963 4.40349 4.52358 4.56602 4.59966 4.71129 4.79262 4.79933 4.90340 4.92723 5.03063 5.03723 5.11967 5.17765 5.23411 5.24328 5.27257 5.35135 5.42338 5.56893 6.22632 6.29750 6.47024 6.94630 7.28525 8.03146 8.27706 9.24186 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.002818 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.887257 B = 9934.224860 C =10820.914290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 H 0.076 0.924 4 C 0.102 3.898 5 N -0.603 5.603 6 C 0.595 3.405 7 O -0.585 6.585 8 C -0.001 4.001 9 C -0.249 4.249 10 S 0.297 5.703 11 C 0.048 3.952 12 C -0.107 4.107 13 C -0.156 4.156 14 C -0.151 4.151 15 N -0.456 5.456 16 C 0.109 3.891 17 C -0.094 4.094 18 H 0.097 0.903 19 C 0.167 3.833 20 N -0.743 5.743 21 C -0.249 4.249 22 H 0.071 0.929 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.975 3.025 26 H -0.291 1.291 27 H -0.289 1.289 28 H -0.267 1.267 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.186 0.814 35 H 0.139 0.861 36 H 0.102 0.898 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.028 0.972 43 H -0.005 1.005 44 H 0.375 0.625 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 6.651 32.562 33.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.112 4.112 3 H 0.095 0.905 4 C -0.019 4.019 5 N -0.334 5.334 6 C 0.382 3.618 7 O -0.466 6.466 8 C -0.136 4.136 9 C -0.391 4.391 10 S 0.556 5.444 11 C -0.230 4.230 12 C -0.129 4.129 13 C -0.194 4.194 14 C -0.190 4.190 15 N -0.171 5.171 16 C -0.014 4.014 17 C -0.113 4.113 18 H 0.115 0.885 19 C 0.040 3.960 20 N -0.385 5.385 21 C -0.381 4.381 22 H 0.088 0.912 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.804 3.196 26 H -0.218 1.218 27 H -0.215 1.215 28 H -0.192 1.192 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.104 0.896 34 H 0.204 0.796 35 H 0.157 0.843 36 H 0.120 0.880 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.013 0.987 44 H 0.207 0.793 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.169 6.710 32.879 34.119 hybrid contribution 0.840 -0.836 -2.629 2.884 sum -5.328 5.874 30.249 31.272 Atomic orbital electron populations 1.21756 0.91365 1.02858 1.02942 1.22121 0.98010 0.98969 0.92089 0.90513 1.23119 0.84792 0.96507 0.97503 1.48870 1.13204 1.54231 1.17053 1.17241 0.80867 0.79290 0.84374 1.90813 1.43141 1.44898 1.67777 1.20002 0.92015 1.05137 0.96406 1.26868 1.03590 1.07202 1.01481 1.82292 1.09166 1.43258 1.09667 1.26927 0.98642 1.02339 0.95099 1.20566 1.01160 1.03287 0.87848 1.23323 0.99684 0.99969 0.96449 1.23292 1.02539 0.98157 0.94976 1.66824 1.31256 1.12323 1.06708 1.22402 0.98775 0.97629 0.82547 1.22319 0.97486 0.95008 0.96527 0.88507 1.20753 0.94174 0.94116 0.86929 1.42555 1.57990 1.14214 1.23791 1.19596 1.20953 0.96718 1.00834 0.91152 1.25612 1.03114 0.97019 1.01033 1.69817 1.50713 1.11017 1.30313 0.85117 0.78272 0.78125 0.78118 1.21795 1.21501 1.19158 0.91705 0.90259 0.92203 0.86327 0.89647 0.79640 0.84331 0.87950 0.85277 0.85721 0.88270 0.89624 0.93339 0.95393 0.98666 0.79316 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.93 71.98 0.64 -1.81 16 2 C -0.09 -2.37 3.31 -9.88 -0.03 -2.40 16 3 H 0.08 2.05 7.71 -2.39 -0.02 2.04 16 4 C 0.10 2.66 6.17 86.48 0.53 3.19 16 5 N -0.60 -21.28 3.33 -811.21 -2.70 -23.97 16 6 C 0.59 23.19 7.89 86.62 0.68 23.87 16 7 O -0.59 -27.90 16.98 -4.13 -0.07 -27.97 16 8 C 0.00 -0.03 6.64 40.56 0.27 0.24 16 9 C -0.25 -6.12 10.62 67.12 0.71 -5.40 16 10 S 0.30 4.31 21.65 -56.49 -1.22 3.08 16 11 C 0.05 0.84 6.99 88.57 0.62 1.46 16 12 C -0.11 -1.10 6.33 -11.54 -0.07 -1.17 16 13 C -0.16 -0.77 10.01 30.62 0.31 -0.47 16 14 C -0.15 -0.88 10.24 30.62 0.31 -0.56 16 15 N -0.46 -11.18 7.34 -180.84 -1.33 -12.51 16 16 C 0.11 4.15 6.39 86.53 0.55 4.70 16 17 C -0.09 -3.23 2.78 -9.89 -0.03 -3.26 16 18 H 0.10 3.18 7.72 -2.39 -0.02 3.16 16 19 C 0.17 7.41 5.41 86.38 0.47 7.88 16 20 N -0.74 -41.14 5.12 -343.46 -1.76 -42.90 16 21 C -0.25 -15.08 9.99 84.03 0.84 -14.24 16 22 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 24 N -0.97 -62.60 13.06 21.65 0.28 -62.32 16 25 Si 0.98 48.99 29.55 68.60 2.03 51.02 16 26 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 28 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 29 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.12 2.98 5.33 -2.38 -0.01 2.96 16 33 H 0.09 1.90 7.83 -2.38 -0.02 1.88 16 34 H 0.19 4.56 8.03 -2.91 -0.02 4.53 16 35 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 0.43 7.21 -2.39 -0.02 0.42 16 37 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.05 2.34 7.07 -2.39 -0.02 2.33 16 42 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.37 21.77 7.38 -92.71 -0.68 21.08 16 45 H 0.25 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -81.78 381.34 1.83 -79.95 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.32 Total: 27.76 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 6.27 Total: 7.86 kcal Atomic # 7 Polarization: -136.20 SS G_CDS: -5.50 Total: -141.70 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.07 Total: -27.97 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.22 Total: 3.08 kcal Total: -81.78 1.83 -79.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716997867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.329 kcal (2) G-P(sol) polarization free energy of solvation -81.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds