Wall clock time and date at job start Tue Mar 31 2020 19:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.87470 * 2 1 4 4 C 1.54321 * 110.01058 * 121.09612 * 2 1 3 5 5 H 1.09004 * 110.71728 * 23.32419 * 4 2 1 6 6 N 1.46894 * 110.72289 * 260.04812 * 4 2 1 7 7 C 1.46893 * 111.00104 * 155.00068 * 6 4 2 8 8 C 1.50705 * 109.47371 * 180.02562 * 7 6 4 9 9 C 1.38226 * 119.61838 * 94.72676 * 8 7 6 10 10 C 1.38630 * 119.15951 * 179.71178 * 9 8 7 11 11 C 1.38667 * 118.41873 * 0.55281 * 10 9 8 12 12 C 1.38187 * 119.16860 * 359.73057 * 11 10 9 13 13 N 1.31856 * 119.61694 * 274.99929 * 8 7 6 14 14 C 1.55164 * 102.94143 * 141.68427 * 4 2 1 15 15 C 1.55137 * 101.48437 * 324.33720 * 14 4 2 16 16 N 1.47019 * 109.88431 * 238.98827 * 2 1 3 17 17 C 1.34773 * 125.65361 * 61.44690 * 16 2 1 18 18 O 1.21287 * 120.00030 * 0.02562 * 17 16 2 19 19 C 1.50704 * 120.00266 * 180.02562 * 17 16 2 20 20 S 1.80996 * 109.47087 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99917 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00415 * 0.02562 * 21 20 19 23 23 C 1.38804 * 119.99716 * 179.97438 * 21 20 19 24 24 N 1.31629 * 120.00435 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99769 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46845 * 60.00524 * 25 23 21 27 27 H 1.48503 * 109.47399 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47295 * 300.00621 * 25 23 21 29 29 H 1.08997 * 109.47090 * 179.55970 * 1 2 3 30 30 H 1.08994 * 109.47356 * 299.56462 * 1 2 3 31 31 H 1.09010 * 109.46908 * 59.56321 * 1 2 3 32 32 H 1.00905 * 111.00033 * 278.95691 * 6 4 2 33 33 H 1.08997 * 109.47369 * 299.99708 * 7 6 4 34 34 H 1.08998 * 109.47361 * 60.00018 * 7 6 4 35 35 H 1.07995 * 120.42079 * 359.97438 * 9 8 7 36 36 H 1.08000 * 120.79216 * 180.25525 * 10 9 8 37 37 H 1.08007 * 120.41947 * 179.70789 * 11 10 9 38 38 H 1.07995 * 119.62034 * 180.02562 * 12 11 10 39 39 H 1.09000 * 111.00422 * 82.57251 * 14 4 2 40 40 H 1.09000 * 111.00346 * 206.39026 * 14 4 2 41 41 H 1.09000 * 110.49390 * 278.45061 * 15 14 4 42 42 H 1.08993 * 110.33850 * 156.06251 * 15 14 4 43 43 H 1.09001 * 109.46841 * 60.00041 * 19 17 16 44 44 H 1.08996 * 109.46854 * 300.00149 * 19 17 16 45 45 H 0.97000 * 119.99818 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 1.2417 5 1 1.3103 -1.4472 1.6178 6 7 2.4590 0.1996 2.2892 7 6 2.3928 -0.4241 3.6175 8 6 2.8095 0.5770 4.6640 9 6 1.8465 1.3205 5.3201 10 6 2.2401 2.2344 6.2854 11 6 3.5944 2.3753 6.5475 12 6 4.5001 1.6016 5.8470 13 7 4.0890 0.7375 4.9393 14 6 3.2919 -1.5107 0.6894 15 6 2.8131 -1.8793 -0.7395 16 7 2.0300 -0.7123 -1.1849 17 6 1.8050 -0.3602 -2.4662 18 8 1.1387 0.6216 -2.7173 19 6 2.3813 -1.1864 -3.5871 20 16 1.9068 -0.4618 -5.1764 21 6 2.6906 -1.5944 -6.2752 22 1 3.2528 -2.4280 -5.8810 23 6 2.5846 -1.4158 -7.6477 24 7 1.8990 -0.4001 -8.1283 25 14 3.4162 -2.6161 -8.8126 26 1 2.8762 -3.9808 -8.5857 27 1 3.1538 -2.2066 -10.2158 28 1 4.8799 -2.6151 -8.5626 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3634 0.5070 0.8938 31 1 -0.3633 0.5207 -0.8861 32 1 3.3804 0.5693 2.1089 33 1 1.3720 -0.7515 3.8147 34 1 3.0625 -1.2835 3.6493 35 1 0.8004 1.1880 5.0868 36 1 1.5096 2.8261 6.8171 37 1 3.9373 3.0812 7.2896 38 1 5.5566 1.7051 6.0456 39 1 4.1682 -0.8634 0.6565 40 1 3.4925 -2.4070 1.2763 41 1 2.1853 -2.7700 -0.7137 42 1 3.6682 -2.0358 -1.3969 43 1 1.9974 -2.2046 -3.5225 44 1 3.4681 -1.2020 -3.5053 45 1 1.4681 0.2238 -7.5233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725555118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:06 Heat of formation + Delta-G solvation = -0.066706 kcal Electronic energy + Delta-G solvation = -25426.057913 eV Core-core repulsion = 21762.354158 eV Total energy + Delta-G solvation = -3663.703756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65309 -40.11119 -37.83050 -35.47130 -32.89746 -32.51481 -32.36229 -31.56913 -30.41609 -28.53950 -26.60829 -24.84439 -24.47358 -23.91650 -22.84412 -22.15917 -21.15855 -18.98958 -18.15966 -17.42448 -16.91150 -16.68290 -16.51579 -15.98547 -15.43679 -15.20746 -14.87124 -14.38828 -14.10678 -14.08672 -13.82351 -13.80451 -13.54002 -13.27906 -13.14564 -12.88475 -12.69770 -12.43635 -12.34714 -12.14369 -12.00120 -11.91528 -11.74802 -11.54010 -11.19792 -10.91697 -10.87907 -10.30691 -10.16646 -9.89121 -9.56060 -9.48790 -9.40465 -9.00218 -8.78193 -8.52356 -8.20365 -6.65506 -6.60891 -3.98485 0.65511 0.85943 2.78508 3.02043 3.25411 3.34851 3.38591 3.48438 3.58829 3.76468 3.98432 4.22928 4.24726 4.31624 4.39433 4.44562 4.65160 4.70142 4.71058 4.92123 4.98321 5.05131 5.07282 5.12046 5.23650 5.27307 5.33409 5.35581 5.41315 5.44137 5.53371 5.58242 5.72097 5.73279 5.75314 5.76394 5.83840 6.03274 6.05004 6.25308 6.29765 6.47197 6.63723 6.92682 7.56236 7.65280 7.92914 8.51240 8.52520 9.28474 10.83025 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029419 B = 0.001893 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.533291 B =14791.497081 C =15097.209460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.081 0.919 4 C 0.083 3.917 5 H 0.096 0.904 6 N -0.672 5.672 7 C 0.111 3.889 8 C 0.129 3.871 9 C -0.150 4.150 10 C -0.077 4.077 11 C -0.175 4.175 12 C 0.099 3.901 13 N -0.482 5.482 14 C -0.163 4.163 15 C 0.103 3.897 16 N -0.623 5.623 17 C 0.548 3.452 18 O -0.513 6.513 19 C -0.124 4.124 20 S -0.116 6.116 21 C -0.607 4.607 22 H 0.065 0.935 23 C 0.035 3.965 24 N -0.884 5.884 25 Si 1.084 2.916 26 H -0.285 1.285 27 H -0.278 1.278 28 H -0.285 1.285 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.351 0.649 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.155 0.845 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 -0.675 32.293 32.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.099 0.901 4 C -0.028 4.028 5 H 0.114 0.886 6 N -0.303 5.303 7 C -0.019 4.019 8 C -0.009 4.009 9 C -0.170 4.170 10 C -0.103 4.103 11 C -0.195 4.195 12 C -0.058 4.058 13 N -0.191 5.191 14 C -0.203 4.203 15 C -0.021 4.021 16 N -0.361 5.361 17 C 0.337 3.663 18 O -0.387 6.387 19 C -0.276 4.276 20 S 0.111 5.889 21 C -0.755 4.755 22 H 0.083 0.917 23 C -0.175 4.175 24 N -0.518 5.518 25 Si 0.910 3.090 26 H -0.211 1.211 27 H -0.203 1.203 28 H -0.212 1.212 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.173 0.827 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.796 0.285 29.825 29.881 hybrid contribution 0.906 -1.024 2.473 2.826 sum 2.702 -0.739 32.298 32.419 Atomic orbital electron populations 1.22079 0.94499 1.01898 1.03093 1.21363 0.94665 0.96596 0.83094 0.90131 1.22684 0.96584 0.92502 0.90990 0.88555 1.60382 1.34388 1.35387 1.00182 1.20806 1.01382 0.93288 0.86381 1.21111 0.88664 0.95718 0.95368 1.21981 1.01247 0.96842 0.96971 1.21633 0.96259 0.96442 0.95951 1.22172 0.94213 1.01316 1.01761 1.22736 1.00329 0.91298 0.91428 1.67471 1.17690 1.18438 1.15536 1.23550 0.98713 1.01686 0.96327 1.22254 0.95687 0.89140 0.94997 1.48551 1.53892 1.28721 1.04893 1.19942 0.79924 0.85025 0.81450 1.90696 1.38492 1.26962 1.82596 1.23298 1.03675 1.02396 0.98184 1.84814 1.70587 1.39659 0.93880 1.23696 1.41287 1.15455 0.95091 0.91664 1.26053 0.96095 0.99438 0.95955 1.70797 1.29191 1.12880 1.38912 0.83333 0.75608 0.74391 0.75679 1.21148 1.20266 1.21151 0.92956 0.91655 0.90952 0.82963 0.89242 0.92968 0.84566 0.84760 0.84803 0.82740 0.90178 0.89853 0.91237 0.90254 0.89135 0.89169 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.11 37.16 0.34 -1.65 16 2 C 0.15 1.84 3.21 -66.96 -0.21 1.63 16 3 H 0.08 1.15 8.03 -51.93 -0.42 0.74 16 4 C 0.08 0.73 2.80 -65.88 -0.18 0.54 16 5 H 0.10 0.75 7.55 -51.93 -0.39 0.36 16 6 N -0.67 -5.63 6.30 -106.06 -0.67 -6.30 16 7 C 0.11 0.79 5.86 -4.98 -0.03 0.76 16 8 C 0.13 1.06 6.29 -82.58 -0.52 0.54 16 9 C -0.15 -1.04 9.72 -39.44 -0.38 -1.43 16 10 C -0.08 -0.46 10.18 -39.28 -0.40 -0.86 16 11 C -0.17 -1.01 10.11 -39.44 -0.40 -1.41 16 12 C 0.10 0.71 11.18 -17.55 -0.20 0.51 16 13 N -0.48 -4.39 10.27 -9.47 -0.10 -4.49 16 14 C -0.16 -1.34 6.68 -24.46 -0.16 -1.50 16 15 C 0.10 1.11 6.70 -2.41 -0.02 1.09 16 16 N -0.62 -9.10 3.06 -162.88 -0.50 -9.60 16 17 C 0.55 10.74 7.66 -10.99 -0.08 10.66 16 18 O -0.51 -11.95 14.89 5.55 0.08 -11.87 16 19 C -0.12 -2.61 5.16 36.01 0.19 -2.43 16 20 S -0.12 -3.18 19.60 -107.50 -2.11 -5.28 16 21 C -0.61 -17.71 9.50 30.94 0.29 -17.42 16 22 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 23 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 24 N -0.88 -27.76 13.67 55.49 0.76 -27.00 16 25 Si 1.08 25.13 29.92 -169.99 -5.09 20.05 16 26 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.15 6.87 -51.92 -0.36 0.80 16 32 H 0.35 3.18 8.20 -39.29 -0.32 2.86 16 33 H 0.09 0.52 7.98 -51.93 -0.41 0.10 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 38 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.08 0.69 7.77 -51.93 -0.40 0.29 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.86 7.48 -51.93 -0.39 0.47 16 43 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 44 H 0.09 1.77 7.85 -51.92 -0.41 1.37 16 45 H 0.28 8.92 7.13 -40.82 -0.29 8.63 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -36.05 386.42 -10.49 -46.54 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.83 Total: 2.16 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.87 Total: -10.03 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.51 Total: -47.39 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.09 Total: 20.05 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.11 Total: -5.28 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.05 -10.49 -46.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725555118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.473 kcal (2) G-P(sol) polarization free energy of solvation -36.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds