Wall clock time and date at job start Tue Mar 31 2020 19:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.87470 * 2 1 4 4 C 1.54321 * 110.01058 * 121.09612 * 2 1 3 5 5 H 1.09004 * 110.71728 * 23.32419 * 4 2 1 6 6 N 1.46894 * 110.72289 * 260.04812 * 4 2 1 7 7 C 1.46893 * 111.00104 * 155.00068 * 6 4 2 8 8 C 1.50705 * 109.47371 * 180.02562 * 7 6 4 9 9 C 1.38226 * 119.61838 * 94.72676 * 8 7 6 10 10 C 1.38630 * 119.15951 * 179.71178 * 9 8 7 11 11 C 1.38667 * 118.41873 * 0.55281 * 10 9 8 12 12 C 1.38187 * 119.16860 * 359.73057 * 11 10 9 13 13 N 1.31856 * 119.61694 * 274.99929 * 8 7 6 14 14 C 1.55164 * 102.94143 * 141.68427 * 4 2 1 15 15 C 1.55137 * 101.48437 * 324.33720 * 14 4 2 16 16 N 1.47019 * 109.88431 * 238.98827 * 2 1 3 17 17 C 1.34773 * 125.65361 * 61.44690 * 16 2 1 18 18 O 1.21287 * 120.00030 * 0.02562 * 17 16 2 19 19 C 1.50704 * 120.00266 * 180.02562 * 17 16 2 20 20 S 1.80996 * 109.47087 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99917 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00415 * 0.02562 * 21 20 19 23 23 C 1.38804 * 119.99716 * 179.97438 * 21 20 19 24 24 N 1.31629 * 120.00435 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99769 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46845 * 60.00524 * 25 23 21 27 27 H 1.48503 * 109.47399 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47295 * 300.00621 * 25 23 21 29 29 H 1.08997 * 109.47090 * 179.55970 * 1 2 3 30 30 H 1.08994 * 109.47356 * 299.56462 * 1 2 3 31 31 H 1.09010 * 109.46908 * 59.56321 * 1 2 3 32 32 H 1.00905 * 111.00033 * 278.95691 * 6 4 2 33 33 H 1.08997 * 109.47369 * 299.99708 * 7 6 4 34 34 H 1.08998 * 109.47361 * 60.00018 * 7 6 4 35 35 H 1.07995 * 120.42079 * 359.97438 * 9 8 7 36 36 H 1.08000 * 120.79216 * 180.25525 * 10 9 8 37 37 H 1.08007 * 120.41947 * 179.70789 * 11 10 9 38 38 H 1.07995 * 119.62034 * 180.02562 * 12 11 10 39 39 H 1.09000 * 111.00422 * 82.57251 * 14 4 2 40 40 H 1.09000 * 111.00346 * 206.39026 * 14 4 2 41 41 H 1.09000 * 110.49390 * 278.45061 * 15 14 4 42 42 H 1.08993 * 110.33850 * 156.06251 * 15 14 4 43 43 H 1.09001 * 109.46841 * 60.00041 * 19 17 16 44 44 H 1.08996 * 109.46854 * 300.00149 * 19 17 16 45 45 H 0.97000 * 119.99818 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 1.2417 5 1 1.3103 -1.4472 1.6178 6 7 2.4590 0.1996 2.2892 7 6 2.3928 -0.4241 3.6175 8 6 2.8095 0.5770 4.6640 9 6 1.8465 1.3205 5.3201 10 6 2.2401 2.2344 6.2854 11 6 3.5944 2.3753 6.5475 12 6 4.5001 1.6016 5.8470 13 7 4.0890 0.7375 4.9393 14 6 3.2919 -1.5107 0.6894 15 6 2.8131 -1.8793 -0.7395 16 7 2.0300 -0.7123 -1.1849 17 6 1.8050 -0.3602 -2.4662 18 8 1.1387 0.6216 -2.7173 19 6 2.3813 -1.1864 -3.5871 20 16 1.9068 -0.4618 -5.1764 21 6 2.6906 -1.5944 -6.2752 22 1 3.2528 -2.4280 -5.8810 23 6 2.5846 -1.4158 -7.6477 24 7 1.8990 -0.4001 -8.1283 25 14 3.4162 -2.6161 -8.8126 26 1 2.8762 -3.9808 -8.5857 27 1 3.1538 -2.2066 -10.2158 28 1 4.8799 -2.6151 -8.5626 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3634 0.5070 0.8938 31 1 -0.3633 0.5207 -0.8861 32 1 3.3804 0.5693 2.1089 33 1 1.3720 -0.7515 3.8147 34 1 3.0625 -1.2835 3.6493 35 1 0.8004 1.1880 5.0868 36 1 1.5096 2.8261 6.8171 37 1 3.9373 3.0812 7.2896 38 1 5.5566 1.7051 6.0456 39 1 4.1682 -0.8634 0.6565 40 1 3.4925 -2.4070 1.2763 41 1 2.1853 -2.7700 -0.7137 42 1 3.6682 -2.0358 -1.3969 43 1 1.9974 -2.2046 -3.5225 44 1 3.4681 -1.2020 -3.5053 45 1 1.4681 0.2238 -7.5233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725555118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:05 Heat of formation + Delta-G solvation = -25.109592 kcal Electronic energy + Delta-G solvation = -25427.143854 eV Core-core repulsion = 21762.354158 eV Total energy + Delta-G solvation = -3664.789697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41756 -41.00887 -39.04802 -36.31674 -34.75784 -33.49716 -33.15942 -32.46433 -31.43037 -29.88433 -27.31389 -27.08012 -25.26460 -24.39003 -23.92820 -22.66737 -22.02804 -20.65578 -19.86370 -18.22036 -17.98563 -17.51551 -17.16126 -16.92605 -16.56840 -16.35988 -15.91546 -15.73507 -15.59199 -15.28202 -14.85258 -14.62160 -14.42981 -14.29825 -14.13541 -13.94985 -13.85210 -13.81931 -13.65543 -13.25449 -13.11970 -12.82394 -12.73951 -12.59341 -12.43477 -12.01736 -11.95765 -11.78034 -11.55728 -11.10427 -10.98423 -10.78662 -10.39443 -10.34132 -9.97088 -9.77296 -9.40576 -8.93681 -8.89331 -6.29194 0.17759 0.39225 1.13363 1.48325 1.50964 1.60317 1.80463 1.96367 2.33359 2.74863 3.01379 3.07583 3.19840 3.36769 3.43480 3.59126 3.81601 3.84522 3.99197 4.06395 4.09654 4.18301 4.23846 4.26880 4.28414 4.29701 4.37147 4.53292 4.55801 4.63884 4.68650 4.70653 4.82068 4.89511 4.94784 5.02180 5.05644 5.22960 5.28393 5.31804 5.40362 5.62651 5.80819 5.95867 6.13290 6.23583 6.34083 7.04332 7.05997 7.06578 8.49596 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029419 B = 0.001893 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.533291 B =14791.497081 C =15097.209460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 H 0.057 0.943 4 C 0.099 3.901 5 H 0.118 0.882 6 N -0.677 5.677 7 C 0.116 3.884 8 C 0.110 3.890 9 C -0.160 4.160 10 C -0.083 4.083 11 C -0.174 4.174 12 C 0.081 3.919 13 N -0.509 5.509 14 C -0.150 4.150 15 C 0.092 3.908 16 N -0.613 5.613 17 C 0.545 3.455 18 O -0.563 6.563 19 C -0.100 4.100 20 S -0.195 6.195 21 C -0.614 4.614 22 H 0.075 0.925 23 C -0.019 4.019 24 N -0.912 5.912 25 Si 1.137 2.863 26 H -0.262 1.262 27 H -0.280 1.280 28 H -0.263 1.263 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.031 0.969 32 H 0.346 0.654 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.171 0.829 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -2.822 34.896 35.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.076 0.924 4 C -0.012 4.012 5 H 0.136 0.864 6 N -0.308 5.308 7 C -0.013 4.013 8 C -0.028 4.028 9 C -0.180 4.180 10 C -0.109 4.109 11 C -0.194 4.194 12 C -0.076 4.076 13 N -0.220 5.220 14 C -0.190 4.190 15 C -0.031 4.031 16 N -0.348 5.348 17 C 0.333 3.667 18 O -0.441 6.441 19 C -0.251 4.251 20 S 0.032 5.968 21 C -0.761 4.761 22 H 0.093 0.907 23 C -0.222 4.222 24 N -0.547 5.547 25 Si 0.954 3.046 26 H -0.187 1.187 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.165 0.835 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.188 0.812 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.861 -1.888 32.515 32.695 hybrid contribution 0.588 -0.303 1.876 1.990 sum 3.449 -2.191 34.391 34.633 Atomic orbital electron populations 1.22001 0.94522 1.02245 1.02094 1.21555 0.94713 0.96013 0.83963 0.92434 1.22536 0.97222 0.92069 0.89365 0.86433 1.60315 1.34130 1.35585 1.00760 1.20835 1.02320 0.92973 0.85177 1.21323 0.88787 0.96553 0.96130 1.22223 1.01766 0.96892 0.97141 1.22005 0.96950 0.96255 0.95691 1.22484 0.94103 1.01118 1.01698 1.23130 1.01563 0.91404 0.91468 1.67449 1.18385 1.19545 1.16600 1.23526 0.98035 1.02720 0.94687 1.22644 0.95696 0.88206 0.96526 1.48500 1.52933 1.29612 1.03732 1.19684 0.79791 0.84391 0.82855 1.90680 1.40865 1.28965 1.83636 1.23159 1.04572 1.02701 0.94675 1.85068 1.71514 1.41525 0.98686 1.24024 1.40924 1.15509 0.95657 0.90669 1.27874 0.95739 1.00213 0.98413 1.70918 1.31096 1.14093 1.38623 0.82720 0.75796 0.72905 0.73147 1.18675 1.20483 1.18776 0.91795 0.89594 0.95009 0.83546 0.87673 0.92720 0.83301 0.82469 0.82366 0.81229 0.90594 0.86801 0.89137 0.90077 0.87382 0.87618 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.11 71.98 0.66 -3.07 16 2 C 0.14 3.42 3.21 45.34 0.15 3.56 16 3 H 0.06 1.68 8.03 -2.39 -0.02 1.66 16 4 C 0.10 1.46 2.80 46.11 0.13 1.59 16 5 H 0.12 1.33 7.55 -2.38 -0.02 1.31 16 6 N -0.68 -10.03 6.30 -489.46 -3.08 -13.12 16 7 C 0.12 1.38 5.86 85.56 0.50 1.88 16 8 C 0.11 1.64 6.29 42.55 0.27 1.91 16 9 C -0.16 -1.94 9.72 22.36 0.22 -1.73 16 10 C -0.08 -0.82 10.18 22.47 0.23 -0.59 16 11 C -0.17 -1.70 10.11 22.36 0.23 -1.47 16 12 C 0.08 1.06 11.18 84.67 0.95 2.01 16 13 N -0.51 -8.76 10.27 -183.88 -1.89 -10.65 16 14 C -0.15 -1.98 6.68 32.07 0.21 -1.76 16 15 C 0.09 1.71 6.70 86.93 0.58 2.29 16 16 N -0.61 -17.35 3.06 -787.62 -2.41 -19.76 16 17 C 0.55 21.64 7.66 87.66 0.67 22.31 16 18 O -0.56 -27.48 14.89 -3.05 -0.05 -27.52 16 19 C -0.10 -4.17 5.16 71.24 0.37 -3.80 16 20 S -0.19 -11.04 19.60 -56.49 -1.11 -12.15 16 21 C -0.61 -35.98 9.50 67.96 0.65 -35.34 16 22 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 23 C -0.02 -1.14 5.49 84.86 0.47 -0.67 16 24 N -0.91 -58.77 13.67 21.65 0.30 -58.48 16 25 Si 1.14 49.70 29.92 68.60 2.05 51.76 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 27 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 28 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.03 1.04 6.87 -2.38 -0.02 1.03 16 32 H 0.35 5.84 8.20 -89.69 -0.74 5.10 16 33 H 0.11 0.89 7.98 -2.39 -0.02 0.87 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 36 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 37 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 38 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 39 H 0.08 1.11 7.77 -2.39 -0.02 1.09 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.08 1.53 7.48 -2.39 -0.02 1.51 16 43 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 44 H 0.11 4.06 7.85 -2.40 -0.02 4.04 16 45 H 0.26 17.46 7.13 -92.71 -0.66 16.80 16 Total: -1.00 -82.65 386.42 0.44 -82.20 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.36 Total: 20.59 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 6.27 Total: -12.88 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -7.09 Total: -102.01 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.52 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.05 Total: 51.76 kcal Atomic # 16 Polarization: -11.04 SS G_CDS: -1.11 Total: -12.15 kcal Total: -82.65 0.44 -82.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725555118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.095 kcal (2) G-P(sol) polarization free energy of solvation -82.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds