Wall clock time and date at job start Tue Mar 31 2020 19:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.99581 * 2 1 4 4 C 1.54323 * 109.88160 * 238.90072 * 2 1 3 5 5 H 1.09002 * 110.72057 * 144.41120 * 4 2 1 6 6 N 1.46901 * 110.72170 * 21.31535 * 4 2 1 7 7 C 1.46896 * 111.00263 * 157.44064 * 6 4 2 8 8 C 1.50692 * 109.47488 * 180.02562 * 7 6 4 9 9 C 1.38230 * 119.61864 * 94.99796 * 8 7 6 10 10 C 1.38630 * 119.15891 * 179.97438 * 9 8 7 11 11 C 1.38672 * 118.42420 * 359.97438 * 10 9 8 12 12 C 1.38189 * 119.15995 * 0.02562 * 11 10 9 13 13 N 1.31858 * 119.61882 * 274.72820 * 8 7 6 14 14 C 1.55153 * 103.10236 * 262.86369 * 4 2 1 15 15 C 1.55386 * 101.36753 * 324.50743 * 14 4 2 16 16 N 1.47021 * 109.88298 * 121.09270 * 2 1 3 17 17 C 1.34783 * 125.64500 * 300.44095 * 16 2 1 18 18 O 1.21277 * 120.00301 * 359.97438 * 17 16 2 19 19 C 1.50702 * 119.99551 * 179.97438 * 17 16 2 20 20 S 1.80996 * 109.46863 * 179.97438 * 19 17 16 21 21 C 1.76208 * 100.00080 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99631 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00072 * 180.02562 * 21 20 19 24 24 N 1.31632 * 119.99707 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00131 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47234 * 89.99804 * 25 23 21 27 27 H 1.48494 * 109.47297 * 210.00218 * 25 23 21 28 28 H 1.48499 * 109.46968 * 330.00194 * 25 23 21 29 29 H 1.08999 * 109.47076 * 181.10096 * 1 2 3 30 30 H 1.09005 * 109.46826 * 301.09789 * 1 2 3 31 31 H 1.08995 * 109.47029 * 61.09517 * 1 2 3 32 32 H 1.00895 * 111.00151 * 281.39868 * 6 4 2 33 33 H 1.09007 * 109.46847 * 300.00424 * 7 6 4 34 34 H 1.09006 * 109.46809 * 59.99924 * 7 6 4 35 35 H 1.07991 * 120.42219 * 0.02562 * 9 8 7 36 36 H 1.08000 * 120.79083 * 180.02562 * 10 9 8 37 37 H 1.07997 * 120.42301 * 180.02562 * 11 10 9 38 38 H 1.08004 * 119.61663 * 179.97438 * 12 11 10 39 39 H 1.09003 * 111.00505 * 82.48412 * 14 4 2 40 40 H 1.09001 * 111.00757 * 206.33495 * 14 4 2 41 41 H 1.08998 * 110.34947 * 278.13041 * 15 14 4 42 42 H 1.08998 * 110.44218 * 155.87708 * 15 14 4 43 43 H 1.09000 * 109.47506 * 300.00089 * 19 17 16 44 44 H 1.09000 * 109.47108 * 60.00264 * 19 17 16 45 45 H 0.96998 * 119.99373 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 2.9657 -0.2833 -1.6182 6 7 1.0279 -0.7993 -2.2919 7 6 1.6351 -1.0053 -3.6136 8 6 0.5535 -1.0501 -4.6619 9 6 0.2256 0.1002 -5.3547 10 6 -0.7705 0.0481 -6.3174 11 6 -1.4020 -1.1646 -6.5488 12 6 -1.0206 -2.2729 -5.8168 13 7 -0.0655 -2.1873 -4.9114 14 6 2.3510 -2.1714 -0.6967 15 6 2.8568 -1.8498 0.7369 16 7 2.0301 -0.7140 1.1839 17 6 1.7753 -0.3843 2.4657 18 8 1.0792 0.5763 2.7180 19 6 2.3556 -1.2092 3.5855 20 16 1.8368 -0.5178 5.1757 21 6 2.6343 -1.6423 6.2731 22 1 3.2251 -2.4553 5.8777 23 6 2.5021 -1.4839 7.6457 24 7 3.0974 -2.3244 8.4655 25 14 1.4796 -0.0782 8.3296 26 1 0.0730 -0.5246 8.4960 27 1 2.0263 0.3366 9.6464 28 1 1.5264 1.0707 7.3900 29 1 -0.3633 -1.0275 0.0197 30 1 -0.3633 0.5308 0.8800 31 1 -0.3633 0.4967 -0.8996 32 1 0.3426 -1.5127 -2.0937 33 1 2.3182 -0.1842 -3.8315 34 1 2.1851 -1.9464 -3.6180 35 1 0.7394 1.0276 -5.1492 36 1 -1.0476 0.9308 -6.8747 37 1 -2.1821 -1.2420 -7.2916 38 1 -1.5078 -3.2209 -5.9907 39 1 1.4437 -2.7746 -0.6651 40 1 3.1247 -2.6631 -1.2864 41 1 3.9091 -1.5667 0.7129 42 1 2.7102 -2.7073 1.3936 43 1 2.0001 -2.2363 3.5021 44 1 3.4436 -1.1950 3.5211 45 1 3.0048 -2.2139 9.4247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725555123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:12 Heat of formation + Delta-G solvation = 9.244697 kcal Electronic energy + Delta-G solvation = -25554.371202 eV Core-core repulsion = 21891.071219 eV Total energy + Delta-G solvation = -3663.299983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.66525 -40.14632 -37.87967 -35.42996 -32.90587 -32.43668 -32.39657 -31.30587 -30.41026 -28.52570 -26.32400 -25.59746 -24.98374 -23.91498 -23.01717 -22.18751 -20.69860 -18.92995 -17.83693 -17.39015 -16.75588 -16.66932 -16.36036 -16.04655 -15.48280 -15.19227 -14.91549 -14.90072 -14.30972 -14.02032 -13.90486 -13.65760 -13.40380 -13.25706 -13.13697 -12.86084 -12.79256 -12.55131 -12.44838 -12.20718 -11.95249 -11.87377 -11.52437 -11.25009 -11.00916 -10.96372 -10.85836 -10.57539 -10.30408 -9.88490 -9.83638 -9.48219 -9.38963 -8.98703 -8.75791 -8.53090 -8.47210 -6.89795 -6.27433 -3.98863 0.65962 0.86208 2.70103 3.00705 3.16497 3.32182 3.35102 3.52370 3.61790 3.77173 3.99455 4.24613 4.31635 4.35194 4.39479 4.44556 4.65237 4.70242 4.70897 4.76392 4.95676 5.01789 5.06567 5.11645 5.14064 5.22944 5.27998 5.34359 5.41363 5.51470 5.53232 5.56044 5.72628 5.74727 5.76279 5.83412 5.91921 6.04046 6.09672 6.25641 6.41062 6.50745 6.63005 6.94492 7.56859 7.65088 7.95676 8.43012 8.51040 9.18872 10.81768 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.032569 B = 0.001954 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.519293 B =14327.026067 C =14630.123174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.148 3.852 3 H 0.076 0.924 4 C 0.082 3.918 5 H 0.095 0.905 6 N -0.669 5.669 7 C 0.108 3.892 8 C 0.130 3.870 9 C -0.151 4.151 10 C -0.077 4.077 11 C -0.175 4.175 12 C 0.099 3.901 13 N -0.482 5.482 14 C -0.162 4.162 15 C 0.102 3.898 16 N -0.622 5.622 17 C 0.549 3.451 18 O -0.515 6.515 19 C -0.118 4.118 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.352 0.648 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.155 0.845 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 1.372 -32.931 33.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 H 0.094 0.906 4 C -0.029 4.029 5 H 0.113 0.887 6 N -0.300 5.300 7 C -0.021 4.021 8 C -0.008 4.008 9 C -0.171 4.171 10 C -0.103 4.103 11 C -0.195 4.195 12 C -0.058 4.058 13 N -0.191 5.191 14 C -0.202 4.202 15 C -0.022 4.022 16 N -0.360 5.360 17 C 0.337 3.663 18 O -0.389 6.389 19 C -0.268 4.268 20 S 0.084 5.916 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.172 0.828 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.172 0.828 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.714 2.712 -31.880 32.340 hybrid contribution 0.456 -1.022 -0.257 1.148 sum -4.258 1.690 -32.136 32.461 Atomic orbital electron populations 1.21948 0.94223 1.01838 1.03061 1.21365 0.95504 0.95635 0.83144 0.90612 1.22620 0.94358 0.94842 0.91049 0.88661 1.60494 1.15085 1.54370 1.00066 1.20822 0.93004 1.01541 0.86719 1.21111 0.95664 0.88689 0.95298 1.21979 0.98649 0.99590 0.96872 1.21631 0.94393 0.98109 0.96157 1.22169 1.01592 0.94089 1.01651 1.22736 0.93025 0.98688 0.91322 1.67475 1.07619 1.27608 1.16426 1.23579 1.02508 0.97826 0.96269 1.22301 0.95048 0.89831 0.95001 1.48557 1.51872 1.30701 1.04890 1.19923 0.80145 0.84778 0.81465 1.90688 1.37467 1.28149 1.82598 1.23264 1.04059 1.02367 0.97149 1.84782 1.68985 1.42184 0.95611 1.22315 1.36359 1.15297 0.92848 0.89428 1.24712 0.94726 0.96065 0.95813 1.69942 1.42147 1.36109 1.03518 0.86731 0.81005 0.84031 0.80074 1.19214 1.19957 1.15905 0.93414 0.91436 0.90644 0.82822 0.89271 0.92981 0.84586 0.84796 0.84832 0.82761 0.90270 0.89839 0.91137 0.90183 0.88725 0.88643 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.23 37.16 0.31 -1.62 16 2 C 0.15 1.76 3.48 -66.95 -0.23 1.52 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.08 0.68 3.11 -65.88 -0.20 0.47 16 5 H 0.10 0.69 7.86 -51.93 -0.41 0.28 16 6 N -0.67 -5.25 4.81 -106.06 -0.51 -5.76 16 7 C 0.11 0.74 5.86 -4.98 -0.03 0.71 16 8 C 0.13 1.03 6.29 -82.59 -0.52 0.51 16 9 C -0.15 -1.00 9.72 -39.44 -0.38 -1.39 16 10 C -0.08 -0.44 10.18 -39.28 -0.40 -0.84 16 11 C -0.17 -0.99 10.11 -39.44 -0.40 -1.39 16 12 C 0.10 0.69 11.18 -17.55 -0.20 0.50 16 13 N -0.48 -4.29 10.27 -9.47 -0.10 -4.39 16 14 C -0.16 -1.28 6.70 -24.33 -0.16 -1.45 16 15 C 0.10 1.06 6.71 -2.27 -0.02 1.04 16 16 N -0.62 -8.70 3.08 -162.72 -0.50 -9.20 16 17 C 0.55 10.25 7.65 -10.98 -0.08 10.17 16 18 O -0.51 -11.42 14.77 5.56 0.08 -11.34 16 19 C -0.12 -2.36 5.16 36.01 0.19 -2.18 16 20 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 21 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 22 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 23 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 24 N -0.88 -26.72 13.97 55.49 0.78 -25.95 16 25 Si 0.86 22.01 27.74 -169.99 -4.72 17.30 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 29 H 0.05 0.59 7.94 -51.93 -0.41 0.18 16 30 H 0.07 1.07 6.77 -51.93 -0.35 0.72 16 31 H 0.07 0.85 7.40 -51.93 -0.38 0.47 16 32 H 0.35 3.06 7.65 -39.29 -0.30 2.76 16 33 H 0.09 0.49 7.98 -51.93 -0.41 0.07 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 37 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 38 H 0.16 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.08 0.67 7.79 -51.93 -0.40 0.26 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.84 7.47 -51.93 -0.39 0.45 16 43 H 0.09 1.78 7.85 -51.92 -0.41 1.38 16 44 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 45 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 382.05 15.07 5.76 5.76 Total: -1.00 -34.84 382.05 -9.98 -44.81 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.85 Total: 0.47 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -1.92 Total: -6.05 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.33 Total: -45.30 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.30 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.84 -9.98 -44.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725555123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.059 kcal (2) G-P(sol) polarization free energy of solvation -34.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds