Wall clock time and date at job start Tue Mar 31 2020 19:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.99581 * 2 1 4 4 C 1.54323 * 109.88160 * 238.90072 * 2 1 3 5 5 H 1.09002 * 110.72057 * 144.41120 * 4 2 1 6 6 N 1.46901 * 110.72170 * 21.31535 * 4 2 1 7 7 C 1.46896 * 111.00263 * 157.44064 * 6 4 2 8 8 C 1.50692 * 109.47488 * 180.02562 * 7 6 4 9 9 C 1.38230 * 119.61864 * 94.99796 * 8 7 6 10 10 C 1.38630 * 119.15891 * 179.97438 * 9 8 7 11 11 C 1.38672 * 118.42420 * 359.97438 * 10 9 8 12 12 C 1.38189 * 119.15995 * 0.02562 * 11 10 9 13 13 N 1.31858 * 119.61882 * 274.72820 * 8 7 6 14 14 C 1.55153 * 103.10236 * 262.86369 * 4 2 1 15 15 C 1.55386 * 101.36753 * 324.50743 * 14 4 2 16 16 N 1.47021 * 109.88298 * 121.09270 * 2 1 3 17 17 C 1.34783 * 125.64500 * 300.44095 * 16 2 1 18 18 O 1.21277 * 120.00301 * 359.97438 * 17 16 2 19 19 C 1.50702 * 119.99551 * 179.97438 * 17 16 2 20 20 S 1.80996 * 109.46863 * 179.97438 * 19 17 16 21 21 C 1.76208 * 100.00080 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99631 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00072 * 180.02562 * 21 20 19 24 24 N 1.31632 * 119.99707 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00131 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47234 * 89.99804 * 25 23 21 27 27 H 1.48494 * 109.47297 * 210.00218 * 25 23 21 28 28 H 1.48499 * 109.46968 * 330.00194 * 25 23 21 29 29 H 1.08999 * 109.47076 * 181.10096 * 1 2 3 30 30 H 1.09005 * 109.46826 * 301.09789 * 1 2 3 31 31 H 1.08995 * 109.47029 * 61.09517 * 1 2 3 32 32 H 1.00895 * 111.00151 * 281.39868 * 6 4 2 33 33 H 1.09007 * 109.46847 * 300.00424 * 7 6 4 34 34 H 1.09006 * 109.46809 * 59.99924 * 7 6 4 35 35 H 1.07991 * 120.42219 * 0.02562 * 9 8 7 36 36 H 1.08000 * 120.79083 * 180.02562 * 10 9 8 37 37 H 1.07997 * 120.42301 * 180.02562 * 11 10 9 38 38 H 1.08004 * 119.61663 * 179.97438 * 12 11 10 39 39 H 1.09003 * 111.00505 * 82.48412 * 14 4 2 40 40 H 1.09001 * 111.00757 * 206.33495 * 14 4 2 41 41 H 1.08998 * 110.34947 * 278.13041 * 15 14 4 42 42 H 1.08998 * 110.44218 * 155.87708 * 15 14 4 43 43 H 1.09000 * 109.47506 * 300.00089 * 19 17 16 44 44 H 1.09000 * 109.47108 * 60.00264 * 19 17 16 45 45 H 0.96998 * 119.99373 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 2.9657 -0.2833 -1.6182 6 7 1.0279 -0.7993 -2.2919 7 6 1.6351 -1.0053 -3.6136 8 6 0.5535 -1.0501 -4.6619 9 6 0.2256 0.1002 -5.3547 10 6 -0.7705 0.0481 -6.3174 11 6 -1.4020 -1.1646 -6.5488 12 6 -1.0206 -2.2729 -5.8168 13 7 -0.0655 -2.1873 -4.9114 14 6 2.3510 -2.1714 -0.6967 15 6 2.8568 -1.8498 0.7369 16 7 2.0301 -0.7140 1.1839 17 6 1.7753 -0.3843 2.4657 18 8 1.0792 0.5763 2.7180 19 6 2.3556 -1.2092 3.5855 20 16 1.8368 -0.5178 5.1757 21 6 2.6343 -1.6423 6.2731 22 1 3.2251 -2.4553 5.8777 23 6 2.5021 -1.4839 7.6457 24 7 3.0974 -2.3244 8.4655 25 14 1.4796 -0.0782 8.3296 26 1 0.0730 -0.5246 8.4960 27 1 2.0263 0.3366 9.6464 28 1 1.5264 1.0707 7.3900 29 1 -0.3633 -1.0275 0.0197 30 1 -0.3633 0.5308 0.8800 31 1 -0.3633 0.4967 -0.8996 32 1 0.3426 -1.5127 -2.0937 33 1 2.3182 -0.1842 -3.8315 34 1 2.1851 -1.9464 -3.6180 35 1 0.7394 1.0276 -5.1492 36 1 -1.0476 0.9308 -6.8747 37 1 -2.1821 -1.2420 -7.2916 38 1 -1.5078 -3.2209 -5.9907 39 1 1.4437 -2.7746 -0.6651 40 1 3.1247 -2.6631 -1.2864 41 1 3.9091 -1.5667 0.7129 42 1 2.7102 -2.7073 1.3936 43 1 2.0001 -2.2363 3.5021 44 1 3.4436 -1.1950 3.5211 45 1 3.0048 -2.2139 9.4247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725555123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:11 Heat of formation + Delta-G solvation = -14.058229 kcal Electronic energy + Delta-G solvation = -25555.381693 eV Core-core repulsion = 21891.071219 eV Total energy + Delta-G solvation = -3664.310474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41286 -40.97731 -39.04822 -36.24571 -34.68385 -33.49197 -33.12975 -32.19299 -31.40857 -29.77345 -27.86101 -27.03256 -25.74957 -24.36651 -24.01264 -22.66321 -21.63759 -20.26218 -19.56510 -18.26372 -17.81643 -17.32306 -17.14505 -17.08813 -16.83500 -16.36117 -16.22635 -15.84054 -15.56726 -15.22432 -14.93891 -14.59804 -14.48382 -14.29326 -14.03064 -13.78533 -13.68526 -13.57059 -13.45060 -13.33321 -13.12608 -13.02147 -12.82567 -12.68518 -12.49106 -12.41105 -11.88402 -11.79006 -11.70269 -11.18153 -10.89412 -10.76412 -10.55054 -10.36886 -9.94639 -9.71622 -9.35577 -9.01729 -8.52577 -6.23765 0.20288 0.41503 0.95309 1.30482 1.44547 1.52476 1.54168 2.03689 2.24291 2.67158 2.77959 2.85507 3.22928 3.38307 3.48002 3.63577 3.83674 3.86701 4.06110 4.08622 4.16138 4.18047 4.26392 4.30377 4.33474 4.38456 4.43870 4.57718 4.63607 4.67151 4.72763 4.78943 4.85737 4.92390 4.99710 5.07583 5.08802 5.30115 5.33998 5.36634 5.48116 5.69768 5.83070 5.98573 6.09976 6.28584 6.39408 6.92468 7.09217 7.09849 8.59754 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.032569 B = 0.001954 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.519293 B =14327.026067 C =14630.123174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.141 3.859 3 H 0.067 0.933 4 C 0.097 3.903 5 H 0.116 0.884 6 N -0.671 5.671 7 C 0.113 3.887 8 C 0.112 3.888 9 C -0.159 4.159 10 C -0.083 4.083 11 C -0.175 4.175 12 C 0.081 3.919 13 N -0.510 5.510 14 C -0.150 4.150 15 C 0.091 3.909 16 N -0.613 5.613 17 C 0.548 3.452 18 O -0.559 6.559 19 C -0.102 4.102 20 S -0.175 6.175 21 C -0.529 4.529 22 H 0.062 0.938 23 C 0.047 3.953 24 N -0.915 5.915 25 Si 0.914 3.086 26 H -0.263 1.263 27 H -0.257 1.257 28 H -0.238 1.238 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.347 0.653 33 H 0.105 0.895 34 H 0.053 0.947 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 1.747 -35.545 35.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 H 0.086 0.914 4 C -0.014 4.014 5 H 0.134 0.866 6 N -0.302 5.302 7 C -0.015 4.015 8 C -0.026 4.026 9 C -0.180 4.180 10 C -0.109 4.109 11 C -0.195 4.195 12 C -0.076 4.076 13 N -0.220 5.220 14 C -0.189 4.189 15 C -0.032 4.032 16 N -0.348 5.348 17 C 0.335 3.665 18 O -0.437 6.437 19 C -0.253 4.253 20 S 0.052 5.948 21 C -0.676 4.676 22 H 0.080 0.920 23 C -0.159 4.159 24 N -0.553 5.553 25 Si 0.736 3.264 26 H -0.187 1.187 27 H -0.181 1.181 28 H -0.162 1.162 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.166 0.834 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.187 0.813 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.605 3.054 -34.542 34.982 hybrid contribution 0.439 -1.212 0.350 1.336 sum -4.166 1.842 -34.193 34.495 Atomic orbital electron populations 1.21818 0.94895 1.01359 1.01865 1.21571 0.94981 0.95789 0.83907 0.91445 1.22500 0.94816 0.94539 0.89514 0.86569 1.60430 1.14960 1.54303 1.00506 1.20845 0.92869 1.02188 0.85639 1.21320 0.96260 0.88980 0.96058 1.22218 0.99015 0.99768 0.96963 1.21999 0.93909 0.99033 0.95946 1.22472 1.01766 0.93643 1.01578 1.23114 0.93048 0.99989 0.91418 1.67453 1.08619 1.28433 1.17499 1.23551 1.03103 0.97607 0.94640 1.22656 0.95574 0.88445 0.96476 1.48504 1.51056 1.31386 1.03853 1.19605 0.79993 0.84166 0.82708 1.90673 1.39591 1.29935 1.83532 1.23212 1.04941 1.02793 0.94360 1.84712 1.69134 1.42219 0.98739 1.22441 1.36114 1.15224 0.93861 0.91969 1.25549 0.95787 0.98367 0.96195 1.70014 1.43409 1.37716 1.04172 0.85874 0.79646 0.81012 0.79883 1.18729 1.18145 1.16192 0.93379 0.95105 0.89313 0.83408 0.87710 0.92914 0.83273 0.82518 0.82466 0.81347 0.90724 0.87066 0.89199 0.90263 0.87498 0.87205 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.23 71.98 0.59 -2.93 16 2 C 0.14 3.17 3.48 45.34 0.16 3.33 16 3 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.10 1.34 3.11 46.10 0.14 1.48 16 5 H 0.12 1.21 7.86 -2.39 -0.02 1.19 16 6 N -0.67 -9.03 4.81 -489.46 -2.35 -11.39 16 7 C 0.11 1.27 5.86 85.56 0.50 1.77 16 8 C 0.11 1.59 6.29 42.55 0.27 1.85 16 9 C -0.16 -1.82 9.72 22.36 0.22 -1.60 16 10 C -0.08 -0.77 10.18 22.47 0.23 -0.54 16 11 C -0.17 -1.63 10.11 22.36 0.23 -1.41 16 12 C 0.08 1.03 11.18 84.67 0.95 1.98 16 13 N -0.51 -8.52 10.27 -183.88 -1.89 -10.41 16 14 C -0.15 -1.90 6.70 32.15 0.22 -1.68 16 15 C 0.09 1.65 6.71 87.02 0.58 2.24 16 16 N -0.61 -16.38 3.08 -787.10 -2.43 -18.80 16 17 C 0.55 20.36 7.65 87.66 0.67 21.03 16 18 O -0.56 -25.24 14.77 -3.02 -0.04 -25.28 16 19 C -0.10 -4.07 5.16 71.24 0.37 -3.70 16 20 S -0.17 -9.09 18.55 -56.49 -1.05 -10.13 16 21 C -0.53 -31.28 10.04 67.95 0.68 -30.60 16 22 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 23 C 0.05 2.77 5.50 84.86 0.47 3.23 16 24 N -0.92 -56.12 13.97 21.65 0.30 -55.82 16 25 Si 0.91 45.66 27.74 68.60 1.90 47.56 16 26 H -0.26 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.24 -11.92 6.74 99.48 0.67 -11.25 16 29 H 0.05 1.17 7.94 -2.39 -0.02 1.15 16 30 H 0.03 0.99 6.77 -2.38 -0.02 0.97 16 31 H 0.09 1.94 7.40 -2.39 -0.02 1.92 16 32 H 0.35 5.43 7.65 -89.70 -0.69 4.74 16 33 H 0.10 0.82 7.98 -2.38 -0.02 0.80 16 34 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 37 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 38 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 39 H 0.07 1.07 7.79 -2.39 -0.02 1.05 16 40 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 42 H 0.08 1.49 7.47 -2.39 -0.02 1.47 16 43 H 0.11 3.98 7.85 -2.39 -0.02 3.96 16 44 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 45 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -77.25 382.05 0.98 -76.26 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.27 Total: 13.56 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 6.27 Total: -5.56 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -6.36 Total: -96.41 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.04 Total: -25.28 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.05 Total: -10.13 kcal Total: -77.25 0.98 -76.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725555123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.207 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds