Wall clock time and date at job start Tue Mar 31 2020 19:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.28333 * 2 1 4 4 C 1.53998 * 110.32665 * 122.13243 * 2 1 3 5 5 N 1.47487 * 107.08337 * 120.30502 * 4 2 1 6 6 C 1.34770 * 127.03591 * 154.51058 * 5 4 2 7 7 O 1.21683 * 120.00294 * 176.18947 * 6 5 4 8 8 C 1.46679 * 119.99920 * 356.18221 * 6 5 4 9 9 C 1.35666 * 126.13262 * 186.36709 * 8 6 5 10 10 N 1.30944 * 114.19339 * 180.02562 * 9 8 6 11 11 C 1.29429 * 117.36356 * 359.97438 * 10 9 8 12 12 C 1.50697 * 124.80128 * 180.02562 * 11 10 9 13 13 C 1.52999 * 117.50196 * 8.72358 * 12 11 10 14 14 C 1.52996 * 117.50115 * 300.05887 * 12 11 10 15 15 S 1.70951 * 110.39026 * 359.72853 * 11 10 9 16 16 C 1.48117 * 105.92867 * 334.55179 * 5 4 2 17 17 C 1.54614 * 110.41299 * 237.80972 * 2 1 3 18 18 H 1.08997 * 110.74104 * 144.57601 * 17 2 1 19 19 C 1.52992 * 110.74353 * 21.42664 * 17 2 1 20 20 N 1.46503 * 109.47353 * 174.99936 * 19 17 2 21 21 C 1.36941 * 120.00133 * 179.97438 * 20 19 17 22 22 H 1.08009 * 119.99744 * 0.02562 * 21 20 19 23 23 C 1.38805 * 120.00113 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00142 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99978 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46969 * 89.99988 * 25 23 21 27 27 H 1.48500 * 109.47010 * 209.99904 * 25 23 21 28 28 H 1.48501 * 109.47029 * 330.00024 * 25 23 21 29 29 H 1.08994 * 109.47222 * 299.31934 * 1 2 3 30 30 H 1.09002 * 109.47490 * 59.32359 * 1 2 3 31 31 H 1.09001 * 109.46800 * 179.31767 * 1 2 3 32 32 H 1.08999 * 109.91159 * 239.66315 * 4 2 1 33 33 H 1.08997 * 109.91590 * 0.94184 * 4 2 1 34 34 H 1.08004 * 122.90222 * 359.96234 * 9 8 6 35 35 H 1.09003 * 115.55064 * 154.39524 * 12 11 10 36 36 H 1.08995 * 117.49883 * 0.02562 * 13 12 11 37 37 H 1.08998 * 117.50059 * 145.01985 * 13 12 11 38 38 H 1.08997 * 117.50195 * 214.97903 * 14 12 11 39 39 H 1.09002 * 117.50049 * 359.97438 * 14 12 11 40 40 H 1.09000 * 110.66280 * 280.84981 * 16 5 4 41 41 H 1.09005 * 110.80376 * 157.80593 * 16 5 4 42 42 H 1.08998 * 109.47425 * 295.00554 * 19 17 2 43 43 H 1.09003 * 109.46996 * 55.00246 * 19 17 2 44 44 H 0.96996 * 119.99431 * 0.02562 * 20 19 17 45 45 H 0.97004 * 120.00312 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7681 1.2229 5 7 2.8826 -1.8834 0.7103 6 6 3.8948 -2.5066 1.3453 7 8 4.4408 -3.4631 0.8277 8 6 4.3386 -2.0319 2.6603 9 6 5.4144 -2.4834 3.3526 10 7 5.5956 -1.8935 4.5075 11 6 4.7503 -0.9731 4.8444 12 6 4.7999 -0.1888 6.1302 13 6 6.0389 -0.3557 7.0123 14 6 4.7052 -0.9732 7.4404 15 16 3.5745 -0.7674 3.6206 16 6 2.3642 -2.1778 -0.6456 17 6 2.0693 -0.7720 -1.2263 18 1 2.9824 -0.3103 -1.6020 19 6 1.0101 -0.8476 -2.3277 20 7 1.5871 -1.4776 -3.5178 21 6 0.8206 -1.6545 -4.6387 22 1 -0.2093 -1.3291 -4.6455 23 6 1.3672 -2.2518 -5.7662 24 7 0.6307 -2.4213 -6.8437 25 14 3.1483 -2.8152 -5.7541 26 1 3.2197 -4.2205 -5.2796 27 1 3.7043 -2.7279 -7.1283 28 1 3.9366 -1.9450 -4.8449 29 1 -0.3633 0.5032 0.8960 30 1 -0.3634 0.5243 -0.8838 31 1 -0.3633 -1.0276 -0.0122 32 1 2.6793 -0.1086 1.8358 33 1 1.2331 -1.1568 1.8102 34 1 6.0646 -3.2628 2.9835 35 1 4.3337 0.7960 6.0985 36 1 6.8183 -1.0325 6.6624 37 1 6.3875 0.5190 7.5611 38 1 4.1771 -0.5044 8.2707 39 1 4.6065 -2.0567 7.3723 40 1 1.4505 -2.7695 -0.5880 41 1 3.1163 -2.6914 -1.2446 42 1 0.1637 -1.4387 -1.9778 43 1 0.6724 0.1584 -2.5767 44 1 2.5119 -1.7701 -3.5115 45 1 1.0126 -2.8391 -7.6314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733560167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:20 Heat of formation + Delta-G solvation = 57.608328 kcal Electronic energy + Delta-G solvation = -26113.764216 eV Core-core repulsion = 22452.561437 eV Total energy + Delta-G solvation = -3661.202778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.59509 -40.02004 -38.16821 -37.20299 -34.94061 -33.08708 -31.44697 -30.95049 -29.36852 -27.38592 -26.43196 -25.61288 -23.56361 -22.89221 -22.75923 -21.79339 -21.13333 -19.41697 -18.86464 -18.59927 -17.45417 -17.05684 -16.48852 -16.14857 -15.71149 -15.31486 -14.85378 -14.83502 -14.57174 -14.41802 -14.10385 -13.84147 -13.25086 -12.99099 -12.72270 -12.62376 -12.55537 -12.46726 -12.16526 -12.02689 -11.98500 -11.67641 -11.34926 -11.32052 -11.12407 -10.93596 -10.66661 -10.61020 -10.42851 -10.25013 -10.11002 -9.85752 -9.74493 -9.59643 -9.21974 -8.91023 -8.78901 -7.25105 -5.77716 -3.13785 -0.08957 0.79967 1.24520 2.12606 2.69514 2.95973 3.33353 3.39467 3.43174 3.47739 3.62475 4.19438 4.26221 4.32144 4.35222 4.46578 4.59408 4.62680 4.69114 4.87251 4.96985 5.05486 5.15848 5.19241 5.26323 5.30215 5.38615 5.50721 5.53361 5.57790 5.60655 5.68085 5.69558 5.79165 5.84245 5.95025 5.98526 6.09062 6.16009 6.27757 6.56927 6.67533 7.23181 7.34450 7.88578 7.97143 8.40948 9.19542 9.92248 10.11016 11.40415 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.002557 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.513578 B =10949.705240 C =11868.711448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.087 0.913 4 C 0.097 3.903 5 N -0.617 5.617 6 C 0.611 3.389 7 O -0.524 6.524 8 C -0.291 4.291 9 C 0.123 3.877 10 N -0.482 5.482 11 C 0.069 3.931 12 C -0.104 4.104 13 C -0.149 4.149 14 C -0.153 4.153 15 S 0.191 5.809 16 C 0.116 3.884 17 C -0.109 4.109 18 H 0.084 0.916 19 C 0.169 3.831 20 N -0.757 5.757 21 C -0.245 4.245 22 H 0.091 0.909 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.882 3.118 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.188 0.812 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.361 0.639 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 8.118 30.621 32.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.105 0.895 4 C -0.027 4.027 5 N -0.350 5.350 6 C 0.399 3.601 7 O -0.402 6.402 8 C -0.415 4.415 9 C -0.035 4.035 10 N -0.196 5.196 11 C -0.205 4.205 12 C -0.126 4.126 13 C -0.188 4.188 14 C -0.192 4.192 15 S 0.451 5.549 16 C -0.005 4.005 17 C -0.128 4.128 18 H 0.102 0.898 19 C 0.042 3.958 20 N -0.403 5.403 21 C -0.375 4.375 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.581 5.581 25 Si 0.712 3.288 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.205 0.795 35 H 0.147 0.853 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.193 0.807 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.109 8.115 30.469 31.942 hybrid contribution 1.869 -1.052 -0.496 2.202 sum 6.978 7.063 29.972 31.574 Atomic orbital electron populations 1.21932 0.93403 1.02787 1.02361 1.21995 0.97042 0.99310 0.92903 0.89510 1.22502 0.94602 0.88428 0.97217 1.48670 1.32693 1.34892 1.18758 1.16279 0.78929 0.82399 0.82544 1.90874 1.56060 1.26741 1.66516 1.25737 1.05411 1.07559 1.02813 1.22139 0.94917 0.98410 0.88016 1.66168 1.27579 1.09153 1.16673 1.26822 0.96014 0.97207 1.00431 1.20589 1.06799 0.99178 0.85994 1.23043 0.91487 1.03520 1.00714 1.23072 1.00804 1.00287 0.95049 1.84139 1.29028 1.32781 1.08966 1.22638 0.99850 0.97488 0.80561 1.22603 1.00607 0.94510 0.95123 0.89801 1.20696 0.93242 0.96723 0.85154 1.42766 1.11793 1.73724 1.12036 1.19019 0.95830 1.33301 0.89344 0.89164 1.24666 0.97507 1.00899 0.95944 1.69696 1.35650 1.49166 1.03564 0.86587 0.86322 0.79006 0.76841 1.20920 1.21696 1.20359 0.92700 0.90902 0.91901 0.91079 0.90332 0.79514 0.85279 0.87264 0.87910 0.87643 0.88202 0.89952 0.89394 0.94723 0.94849 0.80680 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.79 37.16 0.29 -1.11 16 2 C -0.09 -0.96 3.52 -89.25 -0.31 -1.28 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.10 0.97 5.49 -2.98 -0.02 0.95 16 5 N -0.62 -8.31 3.29 -171.31 -0.56 -8.88 16 6 C 0.61 9.14 7.85 -12.86 -0.10 9.04 16 7 O -0.52 -9.69 17.11 5.20 0.09 -9.60 16 8 C -0.29 -3.55 6.40 -37.10 -0.24 -3.79 16 9 C 0.12 1.46 11.10 -18.85 -0.21 1.25 16 10 N -0.48 -5.37 9.98 -11.50 -0.11 -5.49 16 11 C 0.07 0.63 6.96 -13.29 -0.09 0.54 16 12 C -0.10 -0.66 6.28 -91.78 -0.58 -1.24 16 13 C -0.15 -0.86 10.12 -26.69 -0.27 -1.13 16 14 C -0.15 -0.82 10.24 -26.69 -0.27 -1.09 16 15 S 0.19 1.66 18.86 -107.50 -2.03 -0.37 16 16 C 0.12 1.74 6.44 -2.13 -0.01 1.73 16 17 C -0.11 -1.54 3.00 -88.75 -0.27 -1.81 16 18 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 19 C 0.17 2.99 4.45 -4.04 -0.02 2.97 16 20 N -0.76 -17.52 5.33 -59.91 -0.32 -17.84 16 21 C -0.25 -6.85 10.47 -15.06 -0.16 -7.00 16 22 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 23 C 0.01 0.17 5.50 -17.44 -0.10 0.07 16 24 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 25 Si 0.88 22.46 27.74 -169.99 -4.71 17.75 16 26 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.75 6.77 -51.93 -0.35 0.40 16 31 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 32 H 0.07 0.62 4.90 -29.72 -0.15 0.48 16 33 H 0.08 0.69 7.68 -51.93 -0.40 0.29 16 34 H 0.19 2.09 8.06 -52.48 -0.42 1.67 16 35 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.11 0.80 7.84 -51.93 -0.41 0.39 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 41 H 0.09 1.52 7.89 -51.93 -0.41 1.11 16 42 H 0.03 0.61 6.82 -51.93 -0.35 0.26 16 43 H 0.03 0.59 7.38 -51.93 -0.38 0.21 16 44 H 0.36 8.32 5.53 -40.82 -0.23 8.10 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -34.27 374.31 -10.04 -44.31 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.45 Total: 4.90 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.35 Total: -1.91 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.22 Total: -60.72 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.03 Total: -0.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.27 -10.04 -44.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733560167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.916 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds