Wall clock time and date at job start Tue Mar 31 2020 19:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.28333 * 2 1 4 4 C 1.53998 * 110.32665 * 122.13243 * 2 1 3 5 5 N 1.47487 * 107.08337 * 120.30502 * 4 2 1 6 6 C 1.34770 * 127.03591 * 154.51058 * 5 4 2 7 7 O 1.21683 * 120.00294 * 176.18947 * 6 5 4 8 8 C 1.46679 * 119.99920 * 356.18221 * 6 5 4 9 9 C 1.35666 * 126.13262 * 186.36709 * 8 6 5 10 10 N 1.30944 * 114.19339 * 180.02562 * 9 8 6 11 11 C 1.29429 * 117.36356 * 359.97438 * 10 9 8 12 12 C 1.50697 * 124.80128 * 180.02562 * 11 10 9 13 13 C 1.52999 * 117.50196 * 8.72358 * 12 11 10 14 14 C 1.52996 * 117.50115 * 300.05887 * 12 11 10 15 15 S 1.70951 * 110.39026 * 359.72853 * 11 10 9 16 16 C 1.48117 * 105.92867 * 334.55179 * 5 4 2 17 17 C 1.54614 * 110.41299 * 237.80972 * 2 1 3 18 18 H 1.08997 * 110.74104 * 144.57601 * 17 2 1 19 19 C 1.52992 * 110.74353 * 21.42664 * 17 2 1 20 20 N 1.46503 * 109.47353 * 174.99936 * 19 17 2 21 21 C 1.36941 * 120.00133 * 179.97438 * 20 19 17 22 22 H 1.08009 * 119.99744 * 0.02562 * 21 20 19 23 23 C 1.38805 * 120.00113 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00142 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99978 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46969 * 89.99988 * 25 23 21 27 27 H 1.48500 * 109.47010 * 209.99904 * 25 23 21 28 28 H 1.48501 * 109.47029 * 330.00024 * 25 23 21 29 29 H 1.08994 * 109.47222 * 299.31934 * 1 2 3 30 30 H 1.09002 * 109.47490 * 59.32359 * 1 2 3 31 31 H 1.09001 * 109.46800 * 179.31767 * 1 2 3 32 32 H 1.08999 * 109.91159 * 239.66315 * 4 2 1 33 33 H 1.08997 * 109.91590 * 0.94184 * 4 2 1 34 34 H 1.08004 * 122.90222 * 359.96234 * 9 8 6 35 35 H 1.09003 * 115.55064 * 154.39524 * 12 11 10 36 36 H 1.08995 * 117.49883 * 0.02562 * 13 12 11 37 37 H 1.08998 * 117.50059 * 145.01985 * 13 12 11 38 38 H 1.08997 * 117.50195 * 214.97903 * 14 12 11 39 39 H 1.09002 * 117.50049 * 359.97438 * 14 12 11 40 40 H 1.09000 * 110.66280 * 280.84981 * 16 5 4 41 41 H 1.09005 * 110.80376 * 157.80593 * 16 5 4 42 42 H 1.08998 * 109.47425 * 295.00554 * 19 17 2 43 43 H 1.09003 * 109.46996 * 55.00246 * 19 17 2 44 44 H 0.96996 * 119.99431 * 0.02562 * 20 19 17 45 45 H 0.97004 * 120.00312 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7681 1.2229 5 7 2.8826 -1.8834 0.7103 6 6 3.8948 -2.5066 1.3453 7 8 4.4408 -3.4631 0.8277 8 6 4.3386 -2.0319 2.6603 9 6 5.4144 -2.4834 3.3526 10 7 5.5956 -1.8935 4.5075 11 6 4.7503 -0.9731 4.8444 12 6 4.7999 -0.1888 6.1302 13 6 6.0389 -0.3557 7.0123 14 6 4.7052 -0.9732 7.4404 15 16 3.5745 -0.7674 3.6206 16 6 2.3642 -2.1778 -0.6456 17 6 2.0693 -0.7720 -1.2263 18 1 2.9824 -0.3103 -1.6020 19 6 1.0101 -0.8476 -2.3277 20 7 1.5871 -1.4776 -3.5178 21 6 0.8206 -1.6545 -4.6387 22 1 -0.2093 -1.3291 -4.6455 23 6 1.3672 -2.2518 -5.7662 24 7 0.6307 -2.4213 -6.8437 25 14 3.1483 -2.8152 -5.7541 26 1 3.2197 -4.2205 -5.2796 27 1 3.7043 -2.7279 -7.1283 28 1 3.9366 -1.9450 -4.8449 29 1 -0.3633 0.5032 0.8960 30 1 -0.3634 0.5243 -0.8838 31 1 -0.3633 -1.0276 -0.0122 32 1 2.6793 -0.1086 1.8358 33 1 1.2331 -1.1568 1.8102 34 1 6.0646 -3.2628 2.9835 35 1 4.3337 0.7960 6.0985 36 1 6.8183 -1.0325 6.6624 37 1 6.3875 0.5190 7.5611 38 1 4.1771 -0.5044 8.2707 39 1 4.6065 -2.0567 7.3723 40 1 1.4505 -2.7695 -0.5880 41 1 3.1163 -2.6914 -1.2446 42 1 0.1637 -1.4387 -1.9778 43 1 0.6724 0.1584 -2.5767 44 1 2.5119 -1.7701 -3.5115 45 1 1.0126 -2.8391 -7.6314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733560167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:19 Heat of formation + Delta-G solvation = 34.873794 kcal Electronic energy + Delta-G solvation = -26114.750059 eV Core-core repulsion = 22452.561437 eV Total energy + Delta-G solvation = -3662.188622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58770 -40.89481 -39.26585 -37.76297 -36.64382 -34.47522 -33.19518 -31.92453 -30.66216 -28.34982 -27.26026 -26.96950 -24.89844 -23.68184 -23.30735 -23.25613 -22.01373 -20.69878 -19.83883 -19.55189 -19.08615 -18.00652 -17.37616 -17.19194 -16.68350 -16.53295 -16.24169 -15.84439 -15.54564 -15.37007 -15.14595 -15.04651 -14.79529 -14.44401 -14.18870 -13.74515 -13.55054 -13.29367 -13.22066 -13.12062 -12.89351 -12.83939 -12.57001 -12.38464 -12.22591 -11.89649 -11.85032 -11.78055 -11.65957 -11.58846 -11.48464 -11.29732 -10.96223 -10.63809 -10.53004 -10.13807 -9.70577 -9.28856 -8.04098 -5.36134 -0.91093 0.03617 0.45733 1.23746 1.35008 1.37627 1.43167 1.64367 1.95554 2.45303 2.81378 3.00749 3.20810 3.28326 3.41193 3.55488 3.71831 3.75017 3.88812 3.92908 4.03670 4.05350 4.13570 4.24990 4.29766 4.32564 4.47864 4.55997 4.72438 4.74315 4.78911 4.80216 4.87965 4.96104 4.96834 5.03120 5.14350 5.17950 5.20009 5.28881 5.35652 5.52839 5.76478 6.20090 6.22493 6.52169 6.77800 7.07033 7.84434 8.00312 9.17239 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.002557 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.513578 B =10949.705240 C =11868.711448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 H 0.110 0.890 4 C 0.095 3.905 5 N -0.616 5.616 6 C 0.607 3.393 7 O -0.575 6.575 8 C -0.325 4.325 9 C 0.121 3.879 10 N -0.505 5.505 11 C 0.067 3.933 12 C -0.115 4.115 13 C -0.151 4.151 14 C -0.144 4.144 15 S 0.260 5.740 16 C 0.115 3.885 17 C -0.101 4.101 18 H 0.078 0.922 19 C 0.168 3.832 20 N -0.763 5.763 21 C -0.226 4.226 22 H 0.065 0.935 23 C -0.061 4.061 24 N -0.981 5.981 25 Si 0.945 3.055 26 H -0.284 1.284 27 H -0.294 1.294 28 H -0.257 1.257 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.181 0.819 35 H 0.158 0.842 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.040 0.960 43 H 0.041 0.959 44 H 0.361 0.639 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 10.620 34.234 36.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 H 0.128 0.872 4 C -0.028 4.028 5 N -0.348 5.348 6 C 0.396 3.604 7 O -0.457 6.457 8 C -0.449 4.449 9 C -0.038 4.038 10 N -0.219 5.219 11 C -0.205 4.205 12 C -0.137 4.137 13 C -0.190 4.190 14 C -0.183 4.183 15 S 0.521 5.479 16 C -0.007 4.007 17 C -0.121 4.121 18 H 0.096 0.904 19 C 0.042 3.958 20 N -0.409 5.409 21 C -0.357 4.357 22 H 0.083 0.917 23 C -0.253 4.253 24 N -0.632 5.632 25 Si 0.773 3.227 26 H -0.211 1.211 27 H -0.221 1.221 28 H -0.182 1.182 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.198 0.802 35 H 0.176 0.824 36 H 0.106 0.894 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.194 0.806 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.083 10.680 34.150 36.141 hybrid contribution 1.777 -1.761 -1.474 2.904 sum 6.860 8.919 32.676 34.559 Atomic orbital electron populations 1.21942 0.92460 1.02539 1.03526 1.22008 0.97702 0.99844 0.90556 0.87153 1.22754 0.95026 0.87594 0.97426 1.48692 1.32557 1.35463 1.18057 1.16660 0.78602 0.81835 0.83295 1.90831 1.57736 1.29030 1.68058 1.25525 1.06774 1.10139 1.02438 1.22168 0.94886 0.98338 0.88403 1.66237 1.28784 1.10370 1.16513 1.27459 0.95329 0.96234 1.01446 1.20931 1.07717 1.00136 0.84880 1.23087 0.91063 1.04078 1.00732 1.23149 1.00577 0.99558 0.95047 1.83656 1.27242 1.30093 1.06946 1.22501 0.98917 0.97855 0.81470 1.22443 0.99394 0.94684 0.95553 0.90405 1.20882 0.94324 0.96337 0.84244 1.42865 1.11565 1.74039 1.12388 1.19048 0.95094 1.31030 0.90565 0.91721 1.25398 1.01695 1.02287 0.95914 1.69853 1.37632 1.51273 1.04419 0.85558 0.81702 0.78587 0.76821 1.21083 1.22088 1.18189 0.89547 0.91856 0.92822 0.89299 0.88187 0.80236 0.82439 0.89369 0.85637 0.84997 0.89734 0.90031 0.92344 0.94249 0.94146 0.80604 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 7.79 71.98 0.56 -1.73 16 2 C -0.08 -1.41 3.52 -9.91 -0.03 -1.45 16 3 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 4 C 0.09 1.58 5.49 86.53 0.48 2.06 16 5 N -0.62 -15.93 3.29 -814.11 -2.68 -18.61 16 6 C 0.61 18.22 7.85 86.45 0.68 18.90 16 7 O -0.57 -22.24 17.11 -4.30 -0.07 -22.31 16 8 C -0.32 -7.67 6.40 23.88 0.15 -7.51 16 9 C 0.12 2.89 11.10 84.23 0.93 3.83 16 10 N -0.50 -10.84 9.98 -190.30 -1.90 -12.74 16 11 C 0.07 1.08 6.96 88.46 0.62 1.70 16 12 C -0.12 -1.08 6.28 -11.54 -0.07 -1.15 16 13 C -0.15 -1.36 10.12 30.62 0.31 -1.05 16 14 C -0.14 -1.11 10.24 30.62 0.31 -0.80 16 15 S 0.26 3.70 18.86 -56.49 -1.07 2.63 16 16 C 0.11 3.42 6.44 86.73 0.56 3.98 16 17 C -0.10 -2.71 3.00 -9.58 -0.03 -2.74 16 18 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 19 C 0.17 5.76 4.45 86.38 0.38 6.14 16 20 N -0.76 -35.07 5.33 -343.45 -1.83 -36.90 16 21 C -0.23 -12.79 10.47 84.03 0.88 -11.91 16 22 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 23 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 24 N -0.98 -63.24 13.97 21.65 0.30 -62.93 16 25 Si 0.95 47.15 27.74 68.60 1.90 49.05 16 26 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 28 H -0.26 -11.78 6.52 99.48 0.65 -11.13 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 1.13 6.77 -2.39 -0.02 1.12 16 31 H 0.05 0.94 7.52 -2.39 -0.02 0.93 16 32 H 0.09 1.17 4.90 -16.51 -0.08 1.09 16 33 H 0.10 1.31 7.68 -2.39 -0.02 1.30 16 34 H 0.18 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 1.20 7.84 -2.39 -0.02 1.18 16 37 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 2.41 7.95 -2.39 -0.02 2.39 16 41 H 0.06 2.08 7.89 -2.38 -0.02 2.06 16 42 H 0.04 1.34 6.82 -2.39 -0.02 1.33 16 43 H 0.04 1.37 7.38 -2.39 -0.02 1.35 16 44 H 0.36 16.47 5.53 -92.71 -0.51 15.96 16 45 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -77.77 374.31 1.23 -76.54 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.37 Total: 20.19 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 6.20 Total: 5.08 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -6.10 Total: -131.18 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.07 Total: -22.31 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.90 Total: 49.05 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.07 Total: 2.63 kcal Total: -77.77 1.23 -76.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733560167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.415 kcal (2) G-P(sol) polarization free energy of solvation -77.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds