Wall clock time and date at job start Tue Mar 31 2020 19:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 110.28679 * 2 1 4 4 C 1.54001 * 110.33016 * 237.86495 * 2 1 3 5 5 N 1.47479 * 107.08548 * 239.79905 * 4 2 1 6 6 C 1.34777 * 127.03662 * 205.41121 * 5 4 2 7 7 O 1.21687 * 120.00081 * 174.50678 * 6 5 4 8 8 C 1.46686 * 119.99697 * 354.50444 * 6 5 4 9 9 C 1.35661 * 126.12592 * 173.89080 * 8 6 5 10 10 N 1.30944 * 114.18807 * 180.02562 * 9 8 6 11 11 C 1.29435 * 117.36421 * 359.97438 * 10 9 8 12 12 C 1.50702 * 124.80283 * 180.02562 * 11 10 9 13 13 C 1.52997 * 117.49789 * 8.72398 * 12 11 10 14 14 C 1.52997 * 117.49822 * 300.06228 * 12 11 10 15 15 S 1.70950 * 110.38971 * 359.72815 * 11 10 9 16 16 C 1.48124 * 105.93374 * 25.44408 * 5 4 2 17 17 C 1.54619 * 110.32759 * 122.23888 * 2 1 3 18 18 H 1.09003 * 110.74033 * 215.37776 * 17 2 1 19 19 C 1.52997 * 110.74240 * 338.71003 * 17 2 1 20 20 N 1.46498 * 109.47191 * 184.99960 * 19 17 2 21 21 C 1.36935 * 119.99949 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99760 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00217 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99657 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00106 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46899 * 59.99957 * 25 23 21 27 27 H 1.48503 * 109.46658 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47107 * 299.99687 * 25 23 21 29 29 H 1.09005 * 109.46622 * 180.68371 * 1 2 3 30 30 H 1.08997 * 109.47060 * 300.67851 * 1 2 3 31 31 H 1.08997 * 109.47169 * 60.68625 * 1 2 3 32 32 H 1.09001 * 109.91107 * 359.16417 * 4 2 1 33 33 H 1.09001 * 109.91175 * 120.44132 * 4 2 1 34 34 H 1.08001 * 122.90699 * 0.03923 * 9 8 6 35 35 H 1.08991 * 115.54720 * 154.39274 * 12 11 10 36 36 H 1.09006 * 117.50265 * 0.02562 * 13 12 11 37 37 H 1.09002 * 117.49904 * 145.01968 * 13 12 11 38 38 H 1.08997 * 117.50164 * 214.97948 * 14 12 11 39 39 H 1.09002 * 117.50325 * 359.97438 * 14 12 11 40 40 H 1.09003 * 110.65985 * 79.14767 * 16 5 4 41 41 H 1.08999 * 110.66409 * 202.10088 * 16 5 4 42 42 H 1.09002 * 109.46774 * 305.00150 * 19 17 2 43 43 H 1.09000 * 109.46669 * 64.99540 * 19 17 2 44 44 H 0.96994 * 119.99891 * 359.97438 * 20 19 17 45 45 H 0.96998 * 120.00133 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0651 -0.7681 -1.2228 5 7 2.8806 -1.8849 -0.7102 6 6 3.8917 -2.5101 -1.3452 7 8 4.5464 -3.3544 -0.7628 8 6 4.2027 -2.1729 -2.7385 9 6 5.2566 -2.6347 -3.4571 10 7 5.3100 -2.1801 -4.6839 11 6 4.3760 -1.3657 -5.0578 12 6 4.2740 -0.7442 -6.4268 13 6 5.2284 -1.2556 -7.5077 14 6 5.4388 0.1308 -6.8940 15 16 3.2701 -1.1014 -3.7812 16 6 2.3606 -2.1794 0.6451 17 6 2.0672 -0.7734 1.2264 18 1 2.9807 -0.3133 1.6032 19 6 1.0053 -0.8521 2.3250 20 7 1.5801 -1.4835 3.5154 21 6 0.8110 -1.6630 4.6341 22 1 -0.2192 -1.3388 4.6389 23 6 1.3555 -2.2617 5.7620 24 7 2.6108 -2.6573 5.7559 25 14 0.3066 -2.5060 7.2883 26 1 -0.8600 -3.3623 6.9553 27 1 1.1166 -3.1628 8.3455 28 1 -0.1706 -1.1875 7.7771 29 1 -0.3633 -1.0277 0.0123 30 1 -0.3633 0.5243 0.8838 31 1 -0.3633 0.5031 -0.8960 32 1 1.2331 -1.1553 -1.8111 33 1 2.6810 -0.1091 -1.8348 34 1 5.9882 -3.3184 -3.0523 35 1 3.2704 -0.4542 -6.7378 36 1 5.9299 -2.0420 -7.2288 37 1 4.8528 -1.3017 -8.5300 38 1 5.2017 0.9963 -7.5127 39 1 6.2788 0.2574 -6.2110 40 1 1.4461 -2.7698 0.5863 41 1 3.1126 -2.6958 1.2418 42 1 0.6658 0.1531 2.5748 43 1 0.1605 -1.4436 1.9720 44 1 2.5052 -1.7750 3.5110 45 1 2.9912 -3.0760 6.5438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733560171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:25 Heat of formation + Delta-G solvation = 31.225700 kcal Electronic energy + Delta-G solvation = -26006.680461 eV Core-core repulsion = 22344.333646 eV Total energy + Delta-G solvation = -3662.346815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56636 -40.87620 -39.22898 -37.75458 -36.48140 -34.44953 -32.88167 -31.87311 -30.41443 -28.26985 -27.23347 -26.87334 -25.09520 -23.73987 -23.35429 -23.24728 -21.99640 -20.44523 -19.74362 -19.45177 -18.86954 -17.97818 -17.37538 -17.11339 -16.66880 -16.47333 -16.30026 -15.62543 -15.40719 -15.35824 -15.19529 -15.18695 -14.74961 -14.41060 -13.87452 -13.56732 -13.50448 -13.23352 -13.16906 -12.99784 -12.81308 -12.72472 -12.59188 -12.37499 -12.23262 -11.87954 -11.85162 -11.79005 -11.59847 -11.57011 -11.44092 -11.28315 -10.89000 -10.69077 -10.48788 -10.11089 -9.70415 -8.98451 -7.93639 -5.22962 -0.90493 0.04258 0.46902 1.24133 1.46997 1.50574 1.56631 1.67312 1.96439 2.56668 2.81949 3.01594 3.26367 3.40128 3.45659 3.65586 3.73913 3.80217 3.89665 4.04177 4.04890 4.12570 4.19457 4.30722 4.31614 4.37292 4.53246 4.57416 4.75382 4.77889 4.81408 4.81672 4.88879 4.96926 4.99615 5.07233 5.15431 5.19722 5.23223 5.30044 5.37960 5.51250 5.53773 6.25834 6.27740 6.52169 6.80467 7.33501 8.10637 8.31590 9.29907 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.002311 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.178971 B =12115.139371 C =12890.646037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.107 0.893 4 C 0.092 3.908 5 N -0.616 5.616 6 C 0.605 3.395 7 O -0.577 6.577 8 C -0.324 4.324 9 C 0.120 3.880 10 N -0.503 5.503 11 C 0.071 3.929 12 C -0.115 4.115 13 C -0.149 4.149 14 C -0.144 4.144 15 S 0.260 5.740 16 C 0.121 3.879 17 C -0.097 4.097 18 H 0.067 0.933 19 C 0.167 3.833 20 N -0.750 5.750 21 C -0.241 4.241 22 H 0.081 0.919 23 C -0.082 4.082 24 N -0.973 5.973 25 Si 0.975 3.025 26 H -0.277 1.277 27 H -0.300 1.300 28 H -0.275 1.275 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.180 0.820 35 H 0.159 0.841 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.370 0.630 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 10.493 -31.278 33.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 H 0.125 0.875 4 C -0.031 4.031 5 N -0.348 5.348 6 C 0.394 3.606 7 O -0.458 6.458 8 C -0.448 4.448 9 C -0.039 4.039 10 N -0.218 5.218 11 C -0.201 4.201 12 C -0.136 4.136 13 C -0.189 4.189 14 C -0.184 4.184 15 S 0.521 5.479 16 C -0.001 4.001 17 C -0.116 4.116 18 H 0.085 0.915 19 C 0.041 3.959 20 N -0.392 5.392 21 C -0.373 4.373 22 H 0.099 0.901 23 C -0.273 4.273 24 N -0.624 5.624 25 Si 0.804 3.196 26 H -0.203 1.203 27 H -0.226 1.226 28 H -0.201 1.201 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.197 0.803 35 H 0.176 0.824 36 H 0.106 0.894 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.201 0.799 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.303 10.512 -31.208 33.012 hybrid contribution 1.163 -1.565 2.013 2.803 sum -1.140 8.947 -29.195 30.556 Atomic orbital electron populations 1.21928 0.92241 1.02515 1.03528 1.22018 0.97894 0.99633 0.90616 0.87501 1.22710 0.95313 0.87612 0.97463 1.48707 1.32780 1.35260 1.18049 1.16702 0.78865 0.80577 0.84412 1.90839 1.51381 1.35713 1.67901 1.25510 1.06219 1.13249 0.99835 1.22163 0.96361 0.97663 0.87688 1.66230 1.26836 1.13121 1.15568 1.27365 0.94556 0.96379 1.01840 1.20934 0.99519 1.06111 0.87080 1.23093 1.00654 0.97699 0.97406 1.23155 0.97052 0.95462 1.02689 1.83593 1.25244 1.39084 0.99981 1.22412 0.98395 0.97880 0.81449 1.22368 0.99137 0.94488 0.95642 0.91492 1.20879 0.94122 0.95950 0.84979 1.42685 1.12436 1.72487 1.11635 1.19625 0.94953 1.31157 0.91540 0.90072 1.25634 0.97542 1.02445 1.01718 1.69836 1.14437 1.48057 1.30069 0.85185 0.77548 0.77933 0.78947 1.20265 1.22633 1.20077 0.92818 0.91815 0.89439 0.88220 0.88975 0.80291 0.82373 0.89371 0.85547 0.84949 0.89756 0.90231 0.93107 0.94726 0.94676 0.79907 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.79 71.98 0.56 -1.86 16 2 C -0.08 -1.63 3.53 -9.90 -0.03 -1.66 16 3 H 0.11 1.74 8.14 -2.38 -0.02 1.73 16 4 C 0.09 1.73 5.08 86.53 0.44 2.17 16 5 N -0.62 -17.82 3.29 -814.08 -2.68 -20.50 16 6 C 0.61 19.92 7.85 86.45 0.68 20.60 16 7 O -0.58 -24.38 17.06 -4.31 -0.07 -24.45 16 8 C -0.32 -8.28 6.37 23.88 0.15 -8.13 16 9 C 0.12 3.08 11.10 84.23 0.93 4.01 16 10 N -0.50 -11.38 9.98 -190.30 -1.90 -13.28 16 11 C 0.07 1.20 6.96 88.46 0.62 1.82 16 12 C -0.12 -1.15 6.28 -11.54 -0.07 -1.22 16 13 C -0.15 -1.42 10.12 30.62 0.31 -1.11 16 14 C -0.14 -1.20 10.24 30.62 0.31 -0.88 16 15 S 0.26 4.04 19.07 -56.49 -1.08 2.96 16 16 C 0.12 4.11 6.47 86.73 0.56 4.67 16 17 C -0.10 -2.97 3.01 -9.58 -0.03 -3.00 16 18 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 19 C 0.17 6.19 4.44 86.38 0.38 6.57 16 20 N -0.75 -38.07 5.52 -343.45 -1.90 -39.97 16 21 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 22 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 23 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 24 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16 25 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 28 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 29 H 0.05 1.00 7.51 -2.38 -0.02 0.98 16 30 H 0.06 1.19 6.76 -2.39 -0.02 1.17 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.46 7.60 -2.39 -0.02 1.44 16 33 H 0.09 1.41 5.77 -8.71 -0.05 1.36 16 34 H 0.18 4.64 8.06 -2.91 -0.02 4.61 16 35 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 1.25 7.84 -2.38 -0.02 1.23 16 37 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 2.64 7.94 -2.39 -0.02 2.62 16 41 H 0.05 2.14 7.81 -2.39 -0.02 2.12 16 42 H 0.03 1.25 7.37 -2.39 -0.02 1.23 16 43 H 0.04 1.26 6.80 -2.39 -0.02 1.25 16 44 H 0.37 20.63 7.67 -92.71 -0.71 19.92 16 45 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -77.18 377.83 1.07 -76.11 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.26 Total: 26.55 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 6.12 Total: 5.10 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -6.19 Total: -134.99 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.07 Total: -24.45 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.08 Total: 2.96 kcal Total: -77.18 1.07 -76.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733560171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.335 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds