Wall clock time and date at job start Tue Mar 31 2020 19:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.87376 * 2 1 4 4 C 1.54383 * 109.90151 * 121.13756 * 2 1 3 5 5 H 1.08999 * 110.70275 * 23.23566 * 4 2 1 6 6 N 1.46899 * 110.75492 * 259.94560 * 4 2 1 7 7 C 1.46900 * 110.99597 * 160.02831 * 6 4 2 8 8 C 1.50700 * 109.47304 * 180.02562 * 7 6 4 9 9 C 1.38671 * 120.42049 * 89.99517 * 8 7 6 10 10 C 1.38631 * 118.41805 * 180.02562 * 9 8 7 11 11 C 1.38219 * 119.16378 * 0.02562 * 10 9 8 12 12 N 1.31852 * 120.76355 * 359.97438 * 11 10 9 13 13 C 1.31881 * 121.72680 * 359.70566 * 12 11 10 14 14 C 1.55158 * 102.91824 * 141.57782 * 4 2 1 15 15 C 1.54909 * 101.61642 * 324.54893 * 14 4 2 16 16 N 1.47016 * 109.88719 * 238.98075 * 2 1 3 17 17 C 1.34774 * 125.64624 * 61.67276 * 16 2 1 18 18 O 1.21282 * 120.00096 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99909 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.47234 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00249 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99642 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00002 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99836 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47199 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47180 * 119.99744 * 25 23 21 28 28 H 1.48502 * 109.46875 * 239.99783 * 25 23 21 29 29 H 1.09006 * 109.47367 * 179.56674 * 1 2 3 30 30 H 1.09005 * 109.47467 * 299.56445 * 1 2 3 31 31 H 1.08996 * 109.47521 * 59.56529 * 1 2 3 32 32 H 1.00897 * 111.00322 * 283.98031 * 6 4 2 33 33 H 1.08999 * 109.47411 * 300.00210 * 7 6 4 34 34 H 1.09009 * 109.47156 * 60.00081 * 7 6 4 35 35 H 1.07996 * 120.78678 * 359.97438 * 9 8 7 36 36 H 1.07998 * 120.41221 * 179.97438 * 10 9 8 37 37 H 1.07996 * 119.61902 * 180.02562 * 11 10 9 38 38 H 1.08005 * 119.62125 * 180.31532 * 13 12 11 39 39 H 1.09002 * 111.00366 * 206.45412 * 14 4 2 40 40 H 1.09002 * 111.00429 * 82.64474 * 14 4 2 41 41 H 1.09000 * 110.36449 * 155.82966 * 15 14 4 42 42 H 1.09002 * 110.36579 * 278.03887 * 15 14 4 43 43 H 1.09006 * 109.46865 * 299.99965 * 19 17 16 44 44 H 1.08994 * 109.47167 * 60.00324 * 19 17 16 45 45 H 0.97000 * 119.99990 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0554 -0.7506 1.2425 5 1 1.3057 -1.4472 1.6176 6 7 2.4581 0.1962 2.2910 7 6 2.5041 -0.4608 3.6041 8 6 2.9193 0.5394 4.6520 9 6 1.9658 1.2903 5.3228 10 6 2.3941 2.1987 6.2785 11 6 3.7475 2.3252 6.5288 12 7 4.6262 1.5943 5.8714 13 6 4.2547 0.7162 4.9603 14 6 3.2876 -1.5152 0.6905 15 6 2.8145 -1.8784 -0.7392 16 7 2.0300 -0.7124 -1.1848 17 6 1.8085 -0.3580 -2.4661 18 8 1.1450 0.6257 -2.7171 19 6 2.3853 -1.1839 -3.5869 20 16 1.9159 -0.4559 -5.1762 21 6 2.7008 -1.5879 -6.2750 22 1 3.2607 -2.4230 -5.8806 23 6 2.5994 -1.4063 -7.6473 24 7 1.9165 -0.3889 -8.1279 25 14 3.4308 -2.6068 -8.8122 26 1 4.1296 -3.6555 -8.0265 27 1 2.4084 -3.2394 -9.6838 28 1 4.4160 -1.8795 -9.6523 29 1 -0.3634 -1.0277 -0.0078 30 1 -0.3634 0.5071 0.8939 31 1 -0.3634 0.5205 -0.8860 32 1 3.3443 0.6250 2.0701 33 1 1.5172 -0.8540 3.8484 34 1 3.2243 -1.2786 3.5762 35 1 0.9148 1.1708 5.1053 36 1 1.6792 2.8004 6.8200 37 1 4.0892 3.0303 7.2720 38 1 5.0031 0.1317 4.4458 39 1 3.4852 -2.4127 1.2765 40 1 4.1658 -0.8702 0.6594 41 1 3.6716 -2.0319 -1.3948 42 1 2.1902 -2.7717 -0.7167 43 1 3.4720 -1.2021 -3.5027 44 1 1.9989 -2.2012 -3.5246 45 1 1.8460 -0.2618 -9.0869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734389177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:18 Heat of formation + Delta-G solvation = 3.963119 kcal Electronic energy + Delta-G solvation = -25393.466001 eV Core-core repulsion = 21729.936992 eV Total energy + Delta-G solvation = -3663.529009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63834 -40.09279 -37.83157 -35.65001 -32.98026 -32.43409 -32.17635 -31.55020 -30.34677 -28.42529 -26.46494 -25.48870 -24.44695 -23.97720 -22.85215 -22.15928 -21.16435 -18.93747 -17.69037 -17.53115 -16.85212 -16.83095 -16.48048 -15.89408 -15.31422 -14.94060 -14.80723 -14.76350 -14.19051 -14.14474 -13.91788 -13.71633 -13.58373 -13.44123 -13.16135 -12.81454 -12.75679 -12.52669 -12.41114 -12.07155 -12.05427 -11.72490 -11.61041 -11.19679 -11.07744 -11.01876 -10.87516 -10.75686 -10.21258 -9.84408 -9.80548 -9.49987 -9.33246 -9.07784 -8.81596 -8.49301 -8.22594 -6.50151 -6.22041 -3.92484 0.65225 0.88570 2.86302 3.09084 3.21049 3.24325 3.29981 3.34743 3.59865 3.84563 4.02129 4.19568 4.23978 4.27835 4.35492 4.45210 4.57500 4.61960 4.69244 4.91528 4.99568 5.01247 5.10919 5.13174 5.13835 5.22208 5.34555 5.36363 5.42414 5.47306 5.58451 5.63375 5.69985 5.73209 5.76836 5.86134 5.91016 6.05698 6.13427 6.26560 6.31907 6.47906 6.63081 6.88901 7.55743 7.59384 7.70117 8.35027 8.59455 9.23329 10.85450 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028837 B = 0.001887 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.745810 B =14835.198792 C =15143.664371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.146 3.854 3 H 0.080 0.920 4 C 0.083 3.917 5 H 0.097 0.903 6 N -0.674 5.674 7 C 0.104 3.896 8 C -0.135 4.135 9 C -0.053 4.053 10 C -0.174 4.174 11 C 0.096 3.904 12 N -0.486 5.486 13 C 0.104 3.896 14 C -0.166 4.166 15 C 0.104 3.896 16 N -0.624 5.624 17 C 0.550 3.450 18 O -0.512 6.512 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.347 0.653 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 -1.745 30.133 30.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.098 0.902 4 C -0.028 4.028 5 H 0.115 0.885 6 N -0.304 5.304 7 C -0.025 4.025 8 C -0.137 4.137 9 C -0.080 4.080 10 C -0.193 4.193 11 C -0.061 4.061 12 N -0.194 5.194 13 C -0.054 4.054 14 C -0.206 4.206 15 C -0.020 4.020 16 N -0.362 5.362 17 C 0.338 3.662 18 O -0.386 6.386 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.166 0.834 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.086 0.202 29.782 29.803 hybrid contribution 1.242 -2.570 -0.736 2.948 sum 2.328 -2.369 29.046 29.235 Atomic orbital electron populations 1.22078 0.94502 1.01898 1.03094 1.21350 0.94736 0.96514 0.83160 0.90204 1.22716 0.96510 0.92626 0.90944 0.88479 1.60410 1.37325 1.32026 1.00642 1.20801 1.01624 0.93122 0.86969 1.20792 0.94629 0.99571 0.98750 1.21521 1.00259 0.93005 0.93165 1.22193 0.97576 1.00005 0.99565 1.22797 0.89601 0.96506 0.97175 1.67697 1.39132 1.05638 1.06963 1.22691 0.94013 0.94730 0.93920 1.23534 0.98798 1.01642 0.96587 1.22175 0.95737 0.89264 0.94811 1.48582 1.53999 1.28682 1.04952 1.19983 0.79836 0.85027 0.81344 1.90698 1.38515 1.26832 1.82540 1.23515 1.03576 1.02645 1.00014 1.85406 1.69627 1.37719 0.90613 1.22901 1.38222 1.14066 0.93105 0.90915 1.24991 0.95258 0.95986 0.97366 1.70026 1.38555 1.28053 1.13603 0.86119 0.79022 0.80247 0.80115 1.19632 1.20554 1.20562 0.92971 0.91728 0.90889 0.83366 0.89705 0.93617 0.84614 0.84702 0.82818 0.83104 0.89938 0.90329 0.90256 0.91334 0.89433 0.89392 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.11 37.15 0.34 -1.61 16 2 C 0.15 1.76 3.21 -66.93 -0.21 1.55 16 3 H 0.08 1.10 8.03 -51.93 -0.42 0.68 16 4 C 0.08 0.66 2.76 -65.85 -0.18 0.48 16 5 H 0.10 0.71 7.61 -51.93 -0.40 0.31 16 6 N -0.67 -4.80 6.27 -106.02 -0.67 -5.47 16 7 C 0.10 0.58 5.70 -4.98 -0.03 0.55 16 8 C -0.14 -0.90 5.41 -104.48 -0.57 -1.46 16 9 C -0.05 -0.34 9.86 -39.28 -0.39 -0.73 16 10 C -0.17 -1.05 10.11 -39.44 -0.40 -1.44 16 11 C 0.10 0.69 11.18 -17.55 -0.20 0.49 16 12 N -0.49 -4.40 10.36 -13.25 -0.14 -4.54 16 13 C 0.10 0.78 10.86 -17.55 -0.19 0.59 16 14 C -0.17 -1.20 6.63 -24.58 -0.16 -1.36 16 15 C 0.10 1.06 6.69 -2.53 -0.02 1.04 16 16 N -0.62 -8.85 3.06 -162.99 -0.50 -9.35 16 17 C 0.55 10.60 7.66 -10.99 -0.08 10.51 16 18 O -0.51 -11.83 14.90 5.56 0.08 -11.74 16 19 C -0.15 -3.02 5.16 36.01 0.19 -2.84 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 22 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 25 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.15 6.88 -51.93 -0.36 0.79 16 32 H 0.35 2.51 8.29 -39.29 -0.33 2.19 16 33 H 0.08 0.44 8.04 -51.93 -0.42 0.02 16 34 H 0.05 0.21 8.08 -51.92 -0.42 -0.21 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.15 0.87 8.06 -52.48 -0.42 0.44 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.57 7.81 -51.93 -0.41 0.17 16 41 H 0.08 0.81 7.48 -51.93 -0.39 0.43 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.67 7.85 -51.91 -0.41 1.27 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -35.34 387.75 -10.47 -45.81 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.88 Total: -0.39 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.71 Total: -7.22 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -0.57 Total: -44.84 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.34 -10.47 -45.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734389177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.773 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds