Wall clock time and date at job start Tue Mar 31 2020 19:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.87376 * 2 1 4 4 C 1.54383 * 109.90151 * 121.13756 * 2 1 3 5 5 H 1.08999 * 110.70275 * 23.23566 * 4 2 1 6 6 N 1.46899 * 110.75492 * 259.94560 * 4 2 1 7 7 C 1.46900 * 110.99597 * 160.02831 * 6 4 2 8 8 C 1.50700 * 109.47304 * 180.02562 * 7 6 4 9 9 C 1.38671 * 120.42049 * 89.99517 * 8 7 6 10 10 C 1.38631 * 118.41805 * 180.02562 * 9 8 7 11 11 C 1.38219 * 119.16378 * 0.02562 * 10 9 8 12 12 N 1.31852 * 120.76355 * 359.97438 * 11 10 9 13 13 C 1.31881 * 121.72680 * 359.70566 * 12 11 10 14 14 C 1.55158 * 102.91824 * 141.57782 * 4 2 1 15 15 C 1.54909 * 101.61642 * 324.54893 * 14 4 2 16 16 N 1.47016 * 109.88719 * 238.98075 * 2 1 3 17 17 C 1.34774 * 125.64624 * 61.67276 * 16 2 1 18 18 O 1.21282 * 120.00096 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99909 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.47234 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00249 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99642 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00002 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99836 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47199 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47180 * 119.99744 * 25 23 21 28 28 H 1.48502 * 109.46875 * 239.99783 * 25 23 21 29 29 H 1.09006 * 109.47367 * 179.56674 * 1 2 3 30 30 H 1.09005 * 109.47467 * 299.56445 * 1 2 3 31 31 H 1.08996 * 109.47521 * 59.56529 * 1 2 3 32 32 H 1.00897 * 111.00322 * 283.98031 * 6 4 2 33 33 H 1.08999 * 109.47411 * 300.00210 * 7 6 4 34 34 H 1.09009 * 109.47156 * 60.00081 * 7 6 4 35 35 H 1.07996 * 120.78678 * 359.97438 * 9 8 7 36 36 H 1.07998 * 120.41221 * 179.97438 * 10 9 8 37 37 H 1.07996 * 119.61902 * 180.02562 * 11 10 9 38 38 H 1.08005 * 119.62125 * 180.31532 * 13 12 11 39 39 H 1.09002 * 111.00366 * 206.45412 * 14 4 2 40 40 H 1.09002 * 111.00429 * 82.64474 * 14 4 2 41 41 H 1.09000 * 110.36449 * 155.82966 * 15 14 4 42 42 H 1.09002 * 110.36579 * 278.03887 * 15 14 4 43 43 H 1.09006 * 109.46865 * 299.99965 * 19 17 16 44 44 H 1.08994 * 109.47167 * 60.00324 * 19 17 16 45 45 H 0.97000 * 119.99990 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0554 -0.7506 1.2425 5 1 1.3057 -1.4472 1.6176 6 7 2.4581 0.1962 2.2910 7 6 2.5041 -0.4608 3.6041 8 6 2.9193 0.5394 4.6520 9 6 1.9658 1.2903 5.3228 10 6 2.3941 2.1987 6.2785 11 6 3.7475 2.3252 6.5288 12 7 4.6262 1.5943 5.8714 13 6 4.2547 0.7162 4.9603 14 6 3.2876 -1.5152 0.6905 15 6 2.8145 -1.8784 -0.7392 16 7 2.0300 -0.7124 -1.1848 17 6 1.8085 -0.3580 -2.4661 18 8 1.1450 0.6257 -2.7171 19 6 2.3853 -1.1839 -3.5869 20 16 1.9159 -0.4559 -5.1762 21 6 2.7008 -1.5879 -6.2750 22 1 3.2607 -2.4230 -5.8806 23 6 2.5994 -1.4063 -7.6473 24 7 1.9165 -0.3889 -8.1279 25 14 3.4308 -2.6068 -8.8122 26 1 4.1296 -3.6555 -8.0265 27 1 2.4084 -3.2394 -9.6838 28 1 4.4160 -1.8795 -9.6523 29 1 -0.3634 -1.0277 -0.0078 30 1 -0.3634 0.5071 0.8939 31 1 -0.3634 0.5205 -0.8860 32 1 3.3443 0.6250 2.0701 33 1 1.5172 -0.8540 3.8484 34 1 3.2243 -1.2786 3.5762 35 1 0.9148 1.1708 5.1053 36 1 1.6792 2.8004 6.8200 37 1 4.0892 3.0303 7.2720 38 1 5.0031 0.1317 4.4458 39 1 3.4852 -2.4127 1.2765 40 1 4.1658 -0.8702 0.6594 41 1 3.6716 -2.0319 -1.3948 42 1 2.1902 -2.7717 -0.7167 43 1 3.4720 -1.2021 -3.5027 44 1 1.9989 -2.2012 -3.5246 45 1 1.8460 -0.2618 -9.0869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734389177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:17 Heat of formation + Delta-G solvation = -20.491749 kcal Electronic energy + Delta-G solvation = -25394.526444 eV Core-core repulsion = 21729.936992 eV Total energy + Delta-G solvation = -3664.589452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35014 -40.97725 -38.99143 -36.42647 -34.60026 -33.68842 -32.88450 -32.36936 -31.33530 -29.74046 -27.67363 -27.10900 -25.16996 -24.45778 -23.87084 -22.63963 -21.96261 -20.35826 -19.45884 -18.10014 -18.01741 -17.49424 -17.29032 -16.89613 -16.74561 -16.26131 -16.18794 -15.66974 -15.41707 -15.11472 -14.81909 -14.52801 -14.44470 -14.22067 -14.05170 -13.90250 -13.80485 -13.71201 -13.25735 -13.16712 -13.07298 -12.91831 -12.73027 -12.63507 -12.57209 -12.44829 -11.92234 -11.75862 -11.66910 -11.16982 -10.87634 -10.70461 -10.34601 -10.28628 -9.97377 -9.69634 -9.33682 -8.69028 -8.35848 -6.14523 0.17907 0.40613 1.23384 1.40845 1.44320 1.56252 1.59022 2.06848 2.26163 2.82308 2.98339 3.22036 3.26641 3.50732 3.55204 3.64215 3.88960 3.92359 4.00453 4.06318 4.13911 4.18457 4.21080 4.25639 4.34428 4.40334 4.43981 4.56011 4.63001 4.68864 4.74370 4.77299 4.81435 4.94571 4.99419 5.07208 5.12129 5.24852 5.27674 5.40612 5.40765 5.47919 5.81956 6.01345 6.18780 6.33489 6.42638 7.05269 7.06721 7.15565 8.73738 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028837 B = 0.001887 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.745810 B =14835.198792 C =15143.664371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.140 3.860 3 H 0.058 0.942 4 C 0.100 3.900 5 H 0.116 0.884 6 N -0.681 5.681 7 C 0.110 3.890 8 C -0.137 4.137 9 C -0.063 4.063 10 C -0.174 4.174 11 C 0.080 3.920 12 N -0.519 5.519 13 C 0.090 3.910 14 C -0.152 4.152 15 C 0.091 3.909 16 N -0.614 5.614 17 C 0.546 3.454 18 O -0.564 6.564 19 C -0.119 4.119 20 S -0.152 6.152 21 C -0.545 4.545 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.256 1.256 27 H -0.273 1.273 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.030 0.970 32 H 0.346 0.654 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 -4.338 32.188 32.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.036 3.964 3 H 0.076 0.924 4 C -0.011 4.011 5 H 0.133 0.867 6 N -0.312 5.312 7 C -0.019 4.019 8 C -0.139 4.139 9 C -0.090 4.090 10 C -0.194 4.194 11 C -0.076 4.076 12 N -0.228 5.228 13 C -0.067 4.067 14 C -0.191 4.191 15 C -0.032 4.032 16 N -0.350 5.350 17 C 0.334 3.666 18 O -0.442 6.442 19 C -0.270 4.270 20 S 0.075 5.925 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.822 3.178 26 H -0.179 1.179 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.165 0.835 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.187 0.813 38 H 0.181 0.819 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.143 -2.422 31.906 32.070 hybrid contribution 0.901 -1.720 -1.201 2.284 sum 3.045 -4.143 30.705 31.132 Atomic orbital electron populations 1.22001 0.94829 1.02118 1.01964 1.21556 0.94568 0.96067 0.84198 0.92408 1.22531 0.97182 0.92153 0.89223 0.86653 1.60327 1.37520 1.32205 1.01111 1.20819 1.02646 0.92977 0.85437 1.20907 0.94296 0.99753 0.98945 1.21828 1.01041 0.92949 0.93175 1.22463 0.97580 0.99936 0.99419 1.23166 0.90146 0.96772 0.97548 1.67680 1.40334 1.06728 1.08060 1.22961 0.94910 0.94852 0.93985 1.23525 0.98170 1.02881 0.94563 1.22584 0.95659 0.88218 0.96702 1.48516 1.53057 1.29617 1.03770 1.19742 0.79677 0.84376 0.82849 1.90680 1.40955 1.28919 1.83648 1.23307 1.04527 1.02861 0.96345 1.85604 1.70850 1.40136 0.95867 1.23224 1.38267 1.14148 0.93663 0.89907 1.26149 0.95756 0.97952 0.99346 1.70192 1.40165 1.30261 1.14173 0.84888 0.77884 0.77694 0.77363 1.17926 1.19864 1.19928 0.91934 0.89772 0.95104 0.83459 0.88748 0.91914 0.83261 0.82534 0.81268 0.81937 0.86564 0.90242 0.90128 0.89475 0.87762 0.87642 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.11 71.98 0.66 -3.01 16 2 C 0.14 3.21 3.21 45.36 0.15 3.36 16 3 H 0.06 1.60 8.03 -2.38 -0.02 1.58 16 4 C 0.10 1.26 2.76 46.12 0.13 1.38 16 5 H 0.12 1.13 7.61 -2.39 -0.02 1.11 16 6 N -0.68 -7.78 6.27 -489.33 -3.07 -10.85 16 7 C 0.11 0.84 5.70 85.56 0.49 1.33 16 8 C -0.14 -1.52 5.41 -19.77 -0.11 -1.62 16 9 C -0.06 -0.68 9.86 22.47 0.22 -0.46 16 10 C -0.17 -1.82 10.11 22.36 0.23 -1.59 16 11 C 0.08 1.07 11.18 84.69 0.95 2.02 16 12 N -0.52 -9.03 10.36 -195.85 -2.03 -11.06 16 13 C 0.09 1.23 10.86 84.67 0.92 2.15 16 14 C -0.15 -1.58 6.63 31.99 0.21 -1.37 16 15 C 0.09 1.57 6.69 86.86 0.58 2.15 16 16 N -0.61 -16.80 3.06 -787.96 -2.41 -19.21 16 17 C 0.55 21.37 7.66 87.66 0.67 22.05 16 18 O -0.56 -27.42 14.90 -3.03 -0.05 -27.46 16 19 C -0.12 -4.91 5.16 71.24 0.37 -4.54 16 20 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 21 C -0.55 -31.42 9.50 67.95 0.65 -30.78 16 22 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 23 C 0.01 0.72 5.49 84.86 0.47 1.19 16 24 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 25 Si 1.00 43.73 29.55 68.60 2.03 45.75 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 29 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.03 1.00 6.88 -2.39 -0.02 0.99 16 32 H 0.35 4.21 8.29 -89.70 -0.74 3.47 16 33 H 0.09 0.59 8.04 -2.39 -0.02 0.57 16 34 H 0.06 0.30 8.08 -2.38 -0.02 0.28 16 35 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.08 0.87 7.81 -2.39 -0.02 0.85 16 41 H 0.08 1.41 7.48 -2.39 -0.02 1.39 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.10 3.91 7.85 -2.39 -0.02 3.89 16 44 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 45 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -81.50 387.75 0.40 -81.09 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.24 Total: 15.42 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 6.57 Total: -7.76 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -7.23 Total: -97.28 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -81.50 0.40 -81.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734389177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.601 kcal (2) G-P(sol) polarization free energy of solvation -81.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds