Wall clock time and date at job start Tue Mar 31 2020 19:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.99138 * 2 1 4 4 C 1.54336 * 109.99030 * 238.96323 * 2 1 3 5 5 H 1.08994 * 110.66946 * 337.04816 * 4 2 1 6 6 N 1.46907 * 110.84787 * 100.19680 * 4 2 1 7 7 C 1.46896 * 110.99711 * 200.14471 * 6 4 2 8 8 C 1.50705 * 109.47103 * 179.97438 * 7 6 4 9 9 C 1.38671 * 120.41749 * 269.72547 * 8 7 6 10 10 C 1.38633 * 118.41597 * 179.78319 * 9 8 7 11 11 C 1.38231 * 119.16051 * 0.50904 * 10 9 8 12 12 N 1.31855 * 120.76559 * 359.72569 * 11 10 9 13 13 C 1.31880 * 121.72313 * 0.02562 * 12 11 10 14 14 C 1.55149 * 103.01966 * 218.66083 * 4 2 1 15 15 C 1.54912 * 101.58276 * 35.30714 * 14 4 2 16 16 N 1.47020 * 109.88388 * 121.09352 * 2 1 3 17 17 C 1.34777 * 125.64991 * 298.40045 * 16 2 1 18 18 O 1.21283 * 119.99750 * 359.71166 * 17 16 2 19 19 C 1.50702 * 119.99928 * 179.97438 * 17 16 2 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46990 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47522 * 119.99735 * 25 23 21 28 28 H 1.48500 * 109.47073 * 240.00101 * 25 23 21 29 29 H 1.08998 * 109.47283 * 300.35484 * 1 2 3 30 30 H 1.08998 * 109.47209 * 60.36324 * 1 2 3 31 31 H 1.09003 * 109.46983 * 180.35588 * 1 2 3 32 32 H 1.00898 * 110.99963 * 324.09379 * 6 4 2 33 33 H 1.08995 * 109.47253 * 299.99827 * 7 6 4 34 34 H 1.08999 * 109.47405 * 60.00397 * 7 6 4 35 35 H 1.07990 * 120.79094 * 0.02562 * 9 8 7 36 36 H 1.07995 * 120.41537 * 180.25754 * 10 9 8 37 37 H 1.07996 * 119.61490 * 179.74865 * 11 10 9 38 38 H 1.08002 * 119.61692 * 180.02562 * 13 12 11 39 39 H 1.09006 * 111.00811 * 277.23838 * 14 4 2 40 40 H 1.08998 * 111.00493 * 153.38452 * 14 4 2 41 41 H 1.08993 * 110.36878 * 204.14992 * 15 14 4 42 42 H 1.08999 * 110.36498 * 81.82751 * 15 14 4 43 43 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 44 44 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 45 45 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 1.3067 -1.4405 -1.6225 6 7 2.4648 0.1995 -2.2892 7 6 2.5089 -0.4551 -3.6035 8 6 2.9288 0.5456 -4.6492 9 6 1.9783 1.2974 -5.3232 10 6 2.4110 2.2091 -6.2738 11 6 3.7651 2.3298 -6.5239 12 7 4.6405 1.5945 -5.8670 13 6 4.2654 0.7211 -4.9528 14 6 3.2864 -1.5182 -0.6916 15 6 2.8100 -1.8824 0.7368 16 7 2.0301 -0.7140 1.1839 17 6 1.8074 -0.3620 2.4657 18 8 1.1475 0.6238 2.7179 19 6 2.3833 -1.1900 3.5854 20 16 1.9186 -0.4610 5.1756 21 6 2.7003 -1.5965 6.2728 22 1 3.2573 -2.4332 5.8775 23 6 2.6013 -1.4153 7.6454 24 7 1.9238 -0.3948 8.1273 25 14 3.4306 -2.6187 8.8087 26 1 4.1241 -3.6699 8.0218 27 1 4.4191 -1.8949 9.6478 28 1 2.4074 -3.2486 9.6814 29 1 -0.3634 0.5193 0.8868 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3633 -1.0277 0.0064 32 1 1.8555 1.0035 -2.3060 33 1 3.2258 -1.2757 -3.5768 34 1 1.5207 -0.8438 -3.8492 35 1 0.9264 1.1785 -5.1099 36 1 1.6988 2.8143 -6.8149 37 1 4.1100 3.0347 -7.2658 38 1 5.0116 0.1368 -4.4349 39 1 4.1670 -0.8767 -0.6579 40 1 3.4808 -2.4154 -1.2792 41 1 3.6656 -2.0410 1.3931 42 1 2.1803 -2.7717 0.7115 43 1 1.9933 -2.2061 3.5237 44 1 3.4697 -1.2120 3.4993 45 1 1.8542 -0.2683 9.0865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734389178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:21 Heat of formation + Delta-G solvation = 4.379743 kcal Electronic energy + Delta-G solvation = -25390.723997 eV Core-core repulsion = 21727.213054 eV Total energy + Delta-G solvation = -3663.510943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.62589 -40.08803 -37.80045 -35.67705 -32.98220 -32.42784 -32.19915 -31.53221 -30.42786 -28.43684 -26.48568 -25.48581 -24.56809 -23.95782 -22.92558 -22.07014 -20.85488 -19.01747 -17.64215 -17.53496 -16.99947 -16.77908 -16.36658 -16.06349 -15.13734 -15.04998 -14.89948 -14.80032 -14.22624 -14.07311 -13.92513 -13.77703 -13.54722 -13.50853 -13.33800 -12.86207 -12.74743 -12.54175 -12.45919 -12.03435 -11.83008 -11.67990 -11.49198 -11.22802 -11.07122 -11.01103 -10.85024 -10.75131 -10.25886 -9.85141 -9.80166 -9.47083 -9.33316 -9.07285 -8.90250 -8.51029 -8.22527 -6.49851 -6.21663 -3.92106 0.67035 0.86023 2.85161 3.07644 3.21601 3.24850 3.30589 3.35451 3.59771 3.86446 4.06431 4.15221 4.21000 4.34607 4.35728 4.43658 4.54534 4.58369 4.81318 4.92216 5.00417 5.02608 5.11272 5.13621 5.15065 5.27100 5.31906 5.36490 5.37833 5.50083 5.54284 5.61900 5.67443 5.68281 5.80358 5.88294 5.91769 5.98513 6.14087 6.19291 6.28039 6.48885 6.59683 6.86497 7.58752 7.59967 7.68938 8.35567 8.57720 9.23772 10.85824 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028755 B = 0.001887 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.525617 B =14834.708153 C =15143.939595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.082 0.918 4 C 0.077 3.923 5 H 0.063 0.937 6 N -0.673 5.673 7 C 0.104 3.896 8 C -0.135 4.135 9 C -0.070 4.070 10 C -0.174 4.174 11 C 0.097 3.903 12 N -0.486 5.486 13 C 0.121 3.879 14 C -0.122 4.122 15 C 0.100 3.900 16 N -0.620 5.620 17 C 0.550 3.450 18 O -0.514 6.514 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.345 0.655 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 -1.338 -30.201 30.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.100 0.900 4 C -0.033 4.033 5 H 0.081 0.919 6 N -0.304 5.304 7 C -0.026 4.026 8 C -0.137 4.137 9 C -0.097 4.097 10 C -0.193 4.193 11 C -0.060 4.060 12 N -0.195 5.195 13 C -0.036 4.036 14 C -0.160 4.160 15 C -0.024 4.024 16 N -0.358 5.358 17 C 0.339 3.661 18 O -0.388 6.388 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.164 0.836 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.052 0.266 -29.626 29.646 hybrid contribution -0.616 -2.091 0.408 2.218 sum 0.436 -1.825 -29.218 29.278 Atomic orbital electron populations 1.22184 0.94814 1.02304 1.03021 1.21484 0.94137 0.96863 0.84116 0.90021 1.22647 0.96307 0.93579 0.90751 0.91898 1.60548 1.57564 1.09359 1.02965 1.20829 1.00454 0.94752 0.86524 1.20789 0.94973 0.99418 0.98538 1.21531 0.99902 0.93943 0.94320 1.22142 0.97607 0.99961 0.99624 1.22813 0.89587 0.96434 0.97172 1.67741 1.39140 1.05656 1.06928 1.22712 0.94044 0.94075 0.92777 1.22847 0.98326 1.00256 0.94606 1.22307 0.95750 0.88889 0.95426 1.48484 1.54096 1.28560 1.04630 1.20010 0.79726 0.85060 0.81336 1.90693 1.38802 1.26762 1.82548 1.23510 1.03673 1.02603 0.99924 1.85394 1.69925 1.37475 0.90622 1.22902 1.38415 1.13833 0.93097 0.90879 1.24996 0.95258 0.95994 0.97364 1.70031 1.38757 1.27937 1.13555 0.86115 0.79014 0.80255 0.80101 1.19609 1.20554 1.20578 0.90385 0.92403 0.92540 0.83571 0.89475 0.93888 0.85055 0.84773 0.82823 0.82613 0.89342 0.90252 0.90035 0.91515 0.89360 0.89293 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.11 37.16 0.34 -1.57 16 2 C 0.14 1.63 2.99 -66.95 -0.20 1.43 16 3 H 0.08 1.08 7.97 -51.93 -0.41 0.67 16 4 C 0.08 0.63 2.77 -65.87 -0.18 0.45 16 5 H 0.06 0.47 7.60 -51.93 -0.39 0.07 16 6 N -0.67 -4.93 6.29 -106.05 -0.67 -5.60 16 7 C 0.10 0.60 5.70 -4.98 -0.03 0.57 16 8 C -0.13 -0.91 5.41 -104.48 -0.57 -1.48 16 9 C -0.07 -0.42 9.86 -39.28 -0.39 -0.81 16 10 C -0.17 -1.02 10.11 -39.44 -0.40 -1.42 16 11 C 0.10 0.70 11.18 -17.54 -0.20 0.50 16 12 N -0.49 -4.55 10.36 -13.25 -0.14 -4.68 16 13 C 0.12 0.98 10.86 -17.55 -0.19 0.79 16 14 C -0.12 -0.99 6.71 -24.59 -0.17 -1.16 16 15 C 0.10 1.05 6.69 -2.53 -0.02 1.03 16 16 N -0.62 -8.86 3.06 -163.01 -0.50 -9.36 16 17 C 0.55 10.60 7.66 -10.98 -0.08 10.51 16 18 O -0.51 -11.79 14.91 5.55 0.08 -11.70 16 19 C -0.15 -3.02 5.16 36.01 0.19 -2.83 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 21 C -0.53 -15.27 9.50 30.94 0.29 -14.97 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 25 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.08 1.17 6.89 -51.93 -0.36 0.81 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.35 2.51 8.44 -39.29 -0.33 2.18 16 33 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.04 0.22 8.04 -51.93 -0.42 -0.20 16 35 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 37 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.86 7.47 -51.93 -0.39 0.47 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 44 H 0.09 1.71 7.84 -51.92 -0.41 1.30 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 388.03 15.07 5.85 5.85 Total: -1.00 -35.31 388.03 -10.47 -45.78 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.90 Total: -0.39 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.69 Total: -6.95 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.57 Total: -45.13 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.31 -10.47 -45.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734389178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.163 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds