Wall clock time and date at job start Tue Mar 31 2020 19:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.99860 * 2 1 4 4 C 1.54325 * 109.88296 * 238.90113 * 2 1 3 5 5 H 1.09002 * 110.71774 * 144.23287 * 4 2 1 6 6 N 1.46903 * 110.71785 * 21.14133 * 4 2 1 7 7 C 1.46902 * 110.99897 * 166.18390 * 6 4 2 8 8 C 1.50695 * 109.47243 * 179.97438 * 7 6 4 9 9 C 1.38676 * 120.41883 * 90.00168 * 8 7 6 10 10 C 1.38623 * 118.42108 * 180.02562 * 9 8 7 11 11 C 1.38230 * 119.16290 * 359.97438 * 10 9 8 12 12 N 1.31854 * 120.76397 * 0.02562 * 11 10 9 13 13 C 1.31889 * 121.72198 * 359.70628 * 12 11 10 14 14 C 1.55150 * 103.10096 * 262.68752 * 4 2 1 15 15 C 1.54910 * 101.58533 * 324.58633 * 14 4 2 16 16 N 1.47320 * 109.84994 * 121.29634 * 2 1 3 17 17 C 1.34771 * 125.61730 * 300.42244 * 16 2 1 18 18 O 1.21280 * 120.00067 * 0.19486 * 17 16 2 19 19 C 1.50701 * 120.00013 * 180.20088 * 17 16 2 20 20 S 1.81008 * 109.46883 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99618 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00257 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99566 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00208 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99731 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47246 * 90.00013 * 25 23 21 27 27 H 1.48497 * 109.47113 * 209.99933 * 25 23 21 28 28 H 1.48504 * 109.47088 * 329.99937 * 25 23 21 29 29 H 1.08998 * 109.47324 * 174.96874 * 1 2 3 30 30 H 1.08997 * 109.47190 * 294.97231 * 1 2 3 31 31 H 1.09005 * 109.47081 * 54.96646 * 1 2 3 32 32 H 1.00901 * 111.00012 * 42.23466 * 6 4 2 33 33 H 1.08997 * 109.47314 * 300.00452 * 7 6 4 34 34 H 1.09010 * 109.46775 * 59.99897 * 7 6 4 35 35 H 1.08000 * 120.78784 * 359.97438 * 9 8 7 36 36 H 1.08004 * 120.41708 * 180.02562 * 10 9 8 37 37 H 1.08002 * 119.61858 * 180.02562 * 11 10 9 38 38 H 1.08010 * 119.61422 * 180.30757 * 13 12 11 39 39 H 1.08994 * 111.00443 * 82.66511 * 14 4 2 40 40 H 1.09004 * 111.00061 * 206.47124 * 14 4 2 41 41 H 1.08996 * 110.36417 * 155.84834 * 15 14 4 42 42 H 1.08997 * 110.36349 * 278.17236 * 15 14 4 43 43 H 1.09002 * 109.46876 * 299.99417 * 19 17 16 44 44 H 1.09000 * 109.47049 * 59.99944 * 19 17 16 45 45 H 0.97000 * 119.99652 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 2.9639 -0.2813 -1.6201 6 7 1.0264 -0.8028 -2.2903 7 6 1.6058 -1.2129 -3.5765 8 6 0.5234 -1.2566 -4.6240 9 6 0.2330 -0.1316 -5.3809 10 6 -0.7711 -0.2179 -6.3327 11 6 -1.4445 -1.4142 -6.4949 12 7 -1.1415 -2.4641 -5.7570 13 6 -0.1888 -2.4198 -4.8460 14 6 2.3553 -2.1700 -0.6957 15 6 2.8596 -1.8525 0.7342 16 7 2.0302 -0.7198 1.1840 17 6 1.7749 -0.3939 2.4666 18 8 1.0759 0.5639 2.7213 19 6 2.3581 -1.2195 3.5843 20 16 1.8376 -0.5332 5.1763 21 6 2.6377 -1.6586 6.2708 22 1 3.2305 -2.4691 5.8734 23 6 2.5051 -1.5040 7.6438 24 7 1.7822 -0.5164 8.1282 25 14 3.3528 -2.6975 8.8042 26 1 4.7109 -2.1922 9.1287 27 1 2.5593 -2.8213 10.0533 28 1 3.4619 -4.0277 8.1532 29 1 -0.3634 -1.0237 -0.0901 30 1 -0.3633 0.4338 0.9316 31 1 -0.3633 0.5900 -0.8415 32 1 0.5497 0.0825 -2.3744 33 1 2.3719 -0.4971 -3.8746 34 1 2.0527 -2.2020 -3.4747 35 1 0.7757 0.7902 -5.2319 36 1 -1.0236 0.6385 -6.9405 37 1 -2.2278 -1.4898 -7.2346 38 1 0.0345 -3.3018 -4.2639 39 1 1.4501 -2.7764 -0.6650 40 1 3.1311 -2.6594 -1.2846 41 1 2.7137 -2.7127 1.3876 42 1 3.9113 -1.5669 0.7107 43 1 2.0057 -2.2474 3.4987 44 1 3.4460 -1.2017 3.5196 45 1 1.6899 -0.4082 9.0877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734389179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:24 Heat of formation + Delta-G solvation = 9.473324 kcal Electronic energy + Delta-G solvation = -25512.424459 eV Core-core repulsion = 21849.134390 eV Total energy + Delta-G solvation = -3663.290069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63642 -40.10358 -37.83876 -35.63382 -33.02193 -32.42432 -32.20705 -31.29003 -30.40297 -28.39476 -26.24815 -25.48604 -24.94320 -23.96290 -23.03779 -22.15315 -20.30639 -19.03398 -17.73818 -17.54992 -16.89641 -16.69336 -16.34426 -16.17684 -15.26333 -15.09280 -14.96856 -14.79779 -14.38084 -14.08517 -13.88661 -13.69648 -13.50581 -13.36591 -13.22837 -12.84354 -12.56891 -12.46468 -12.38928 -12.04930 -11.81145 -11.60204 -11.54556 -11.10765 -11.05824 -11.01331 -10.78404 -10.74854 -10.25352 -9.84906 -9.80691 -9.45279 -9.30986 -9.06108 -8.87494 -8.49918 -8.22452 -6.49391 -6.21105 -3.91586 0.67532 0.86290 2.86640 3.08641 3.22596 3.25183 3.30213 3.35616 3.60655 3.86755 4.06842 4.15706 4.21557 4.36034 4.36429 4.44188 4.54620 4.58829 4.81306 4.92059 5.01243 5.04915 5.06909 5.14030 5.20530 5.32517 5.37192 5.38268 5.46221 5.50759 5.56127 5.66164 5.67626 5.72326 5.81234 5.88316 5.96771 6.10024 6.15034 6.28220 6.37531 6.53972 6.61119 6.89213 7.59163 7.60035 7.70131 8.35761 8.58979 9.24153 10.86315 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.001893 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.620266 B =14788.236213 C =15052.653908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 H 0.071 0.929 4 C 0.077 3.923 5 H 0.059 0.941 6 N -0.670 5.670 7 C 0.102 3.898 8 C -0.134 4.134 9 C -0.071 4.071 10 C -0.174 4.174 11 C 0.097 3.903 12 N -0.486 5.486 13 C 0.121 3.879 14 C -0.121 4.121 15 C 0.100 3.900 16 N -0.621 5.621 17 C 0.550 3.450 18 O -0.514 6.514 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.346 0.654 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 -1.682 -30.325 30.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.036 3.964 3 H 0.089 0.911 4 C -0.034 4.034 5 H 0.076 0.924 6 N -0.303 5.303 7 C -0.028 4.028 8 C -0.136 4.136 9 C -0.098 4.098 10 C -0.193 4.193 11 C -0.060 4.060 12 N -0.194 5.194 13 C -0.036 4.036 14 C -0.159 4.159 15 C -0.024 4.024 16 N -0.359 5.359 17 C 0.339 3.661 18 O -0.388 6.388 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.167 0.833 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.260 -1.547 -29.640 29.707 hybrid contribution 2.360 -0.217 0.255 2.383 sum 1.100 -1.764 -29.385 29.458 Atomic orbital electron populations 1.21964 0.93944 1.02797 1.02383 1.21497 0.95645 0.95262 0.83954 0.91134 1.22572 0.93032 0.96748 0.91010 0.92358 1.60674 1.28120 1.37177 1.04295 1.20832 0.92933 1.01981 0.87022 1.20783 0.99550 0.95034 0.98220 1.21527 0.96095 0.98075 0.94058 1.22137 0.97644 0.99702 0.99856 1.22810 0.97871 0.88517 0.96841 1.67744 1.15094 1.30938 1.05670 1.22713 0.90164 0.97312 0.93427 1.22839 1.02215 0.96206 0.94683 1.22288 0.94808 0.89909 0.95354 1.48580 1.51860 1.30756 1.04673 1.19996 0.80081 0.84731 0.81311 1.90690 1.37280 1.28309 1.82495 1.23515 1.03684 1.02544 0.99981 1.85394 1.67042 1.40357 0.90590 1.22860 1.36377 1.15963 0.93111 0.90944 1.24992 0.95247 0.96007 0.97341 1.70019 1.37284 1.29416 1.13551 0.86170 0.79200 0.80521 0.79619 1.20286 1.20745 1.19687 0.91669 0.90956 0.92458 0.83332 0.93987 0.89504 0.85092 0.84801 0.82844 0.82631 0.89340 0.90305 0.90081 0.91476 0.89319 0.89389 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.31 37.16 0.31 -1.58 16 2 C 0.14 1.65 3.44 -66.79 -0.23 1.42 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.08 0.62 3.08 -65.88 -0.20 0.42 16 5 H 0.06 0.42 8.00 -51.93 -0.42 0.01 16 6 N -0.67 -4.75 5.41 -106.05 -0.57 -5.33 16 7 C 0.10 0.58 5.69 -4.98 -0.03 0.55 16 8 C -0.13 -0.89 5.41 -104.48 -0.57 -1.46 16 9 C -0.07 -0.42 9.86 -39.28 -0.39 -0.81 16 10 C -0.17 -1.01 10.11 -39.44 -0.40 -1.41 16 11 C 0.10 0.69 11.18 -17.54 -0.20 0.49 16 12 N -0.49 -4.53 10.36 -13.25 -0.14 -4.67 16 13 C 0.12 0.98 10.86 -17.55 -0.19 0.79 16 14 C -0.12 -0.96 6.39 -24.59 -0.16 -1.12 16 15 C 0.10 1.05 6.69 -2.53 -0.02 1.03 16 16 N -0.62 -8.85 3.09 -162.80 -0.50 -9.35 16 17 C 0.55 10.60 7.65 -10.99 -0.08 10.51 16 18 O -0.51 -11.78 14.69 5.56 0.08 -11.70 16 19 C -0.15 -3.02 5.16 36.01 0.19 -2.84 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.53 -15.29 9.50 30.94 0.29 -14.99 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 25 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 30 H 0.07 1.16 6.59 -51.93 -0.34 0.81 16 31 H 0.06 0.57 6.71 -51.93 -0.35 0.22 16 32 H 0.35 2.44 6.94 -39.29 -0.27 2.17 16 33 H 0.04 0.21 8.06 -51.93 -0.42 -0.21 16 34 H 0.09 0.46 7.84 -51.92 -0.41 0.05 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 37 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.71 7.85 -51.92 -0.41 1.30 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 383.68 15.07 5.78 5.78 Total: -1.00 -35.21 383.68 -10.39 -45.60 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.77 Total: -0.39 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.76 Total: -6.99 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.48 Total: -44.86 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.21 -10.39 -45.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734389179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.069 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds