Wall clock time and date at job start Tue Mar 31 2020 18:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46883 * 2 1 4 4 N 1.46503 * 109.46881 * 179.97438 * 3 2 1 5 5 C 1.36930 * 119.99888 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00642 * 0.02562 * 5 4 3 7 7 C 1.38813 * 120.00070 * 180.02562 * 5 4 3 8 8 N 1.31617 * 119.99888 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00423 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47044 * 89.99847 * 9 7 5 11 11 H 1.48493 * 109.47459 * 209.99956 * 9 7 5 12 12 H 1.48501 * 109.46964 * 330.00688 * 9 7 5 13 13 N 1.46502 * 109.47066 * 120.00391 * 2 1 3 14 14 C 1.34779 * 119.99626 * 304.29848 * 13 2 1 15 15 O 1.21684 * 120.00289 * 354.98156 * 14 13 2 16 16 C 1.46685 * 119.99493 * 174.98489 * 14 13 2 17 17 C 1.35654 * 126.13282 * 359.97438 * 16 14 13 18 18 N 1.30943 * 114.19409 * 179.97438 * 17 16 14 19 19 C 1.29433 * 117.36335 * 0.02562 * 18 17 16 20 20 C 1.50698 * 124.80604 * 179.97438 * 19 18 17 21 21 C 1.52999 * 117.49987 * 8.64659 * 20 19 18 22 22 C 1.52999 * 60.00167 * 252.51023 * 21 20 19 23 23 S 1.70954 * 110.39021 * 359.97438 * 19 18 17 24 24 C 1.53004 * 109.46983 * 239.99805 * 2 1 3 25 25 C 1.53007 * 117.49529 * 12.78172 * 24 2 1 26 26 C 1.52991 * 117.49999 * 304.12300 * 24 2 1 27 27 H 1.08997 * 109.46916 * 299.99745 * 1 2 3 28 28 H 1.09001 * 109.47352 * 59.99800 * 1 2 3 29 29 H 1.09003 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47335 * 299.99683 * 3 2 1 31 31 H 1.08997 * 109.47136 * 60.00390 * 3 2 1 32 32 H 0.97004 * 120.00100 * 0.02562 * 4 3 2 33 33 H 0.97007 * 120.00704 * 179.97438 * 8 7 5 34 34 H 0.96995 * 120.00105 * 124.30699 * 13 2 1 35 35 H 1.08002 * 122.90571 * 0.02562 * 17 16 14 36 36 H 1.08997 * 115.55046 * 154.36004 * 20 19 18 37 37 H 1.09005 * 117.49701 * 359.97438 * 21 20 19 38 38 H 1.08996 * 117.49966 * 145.02018 * 21 20 19 39 39 H 1.08998 * 117.50196 * 252.51357 * 22 21 20 40 40 H 1.09006 * 117.52118 * 107.47935 * 22 21 20 41 41 H 1.08994 * 115.54483 * 158.44201 * 24 2 1 42 42 H 1.08996 * 117.49926 * 359.97438 * 25 24 2 43 43 H 1.09004 * 117.49539 * 145.01646 * 25 24 2 44 44 H 1.09009 * 117.49801 * 214.97534 * 26 24 2 45 45 H 1.09001 * 117.50243 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1896 2.6284 0.0002 6 1 3.6497 3.5637 -0.0002 7 6 5.5778 2.6284 0.0002 8 7 6.2359 1.4886 0.0002 9 14 6.5118 4.2461 -0.0010 10 1 6.7593 4.6759 1.3988 11 1 7.8094 4.0680 -0.7008 12 1 5.7092 5.2805 -0.7018 13 7 2.0184 -0.6907 1.1961 14 6 1.6228 -0.2830 2.4184 15 8 0.9342 0.7136 2.5340 16 6 2.0226 -1.0405 3.6091 17 6 2.7838 -2.1633 3.6246 18 7 2.9991 -2.6492 4.8214 19 6 2.4742 -2.0189 5.8226 20 6 2.6137 -2.4291 7.2660 21 6 3.5962 -3.5568 7.5881 22 6 2.0893 -3.8110 7.6615 23 16 1.6004 -0.6550 5.2760 24 6 2.0400 -0.7213 -1.2493 25 6 1.0276 -1.0149 -2.3582 26 6 1.5578 -2.1541 -1.4841 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9901 0.6024 0.0006 33 1 7.2059 1.4885 -0.0002 34 1 2.6264 -1.4413 1.1085 35 1 3.1789 -2.6167 2.7276 36 1 2.5132 -1.6252 7.9951 37 1 4.1415 -4.0023 6.7559 38 1 4.1426 -3.4948 8.5292 39 1 1.6442 -3.9161 8.6508 40 1 1.6430 -4.4232 6.8777 41 1 3.0590 -0.4775 -1.5497 42 1 -0.0018 -0.6946 -2.1976 43 1 1.3807 -0.9647 -3.3883 44 1 2.2595 -2.8531 -1.9394 45 1 0.8775 -2.5832 -0.7484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753527312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:23 Heat of formation + Delta-G solvation = 59.012691 kcal Electronic energy + Delta-G solvation = -26737.535339 eV Core-core repulsion = 23076.393459 eV Total energy + Delta-G solvation = -3661.141881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.63385 -40.77228 -38.99652 -37.77868 -36.38907 -35.07995 -33.32511 -31.96134 -30.47248 -27.70696 -27.50286 -25.25897 -24.23735 -23.86300 -23.24272 -23.15070 -22.41371 -20.35390 -20.22478 -19.32424 -19.03992 -18.31064 -17.18430 -16.88365 -16.56818 -16.28043 -16.18504 -15.90580 -15.42780 -15.29996 -15.19029 -14.95410 -14.83951 -14.23426 -13.82647 -13.70733 -13.26424 -13.19209 -13.09889 -12.82037 -12.65793 -12.49993 -12.36191 -12.25078 -12.11292 -12.03181 -11.84238 -11.77670 -11.58797 -11.30659 -11.11694 -11.00881 -10.89045 -10.55031 -10.51774 -10.08580 -9.78721 -8.96539 -7.96891 -5.23051 -0.82685 0.06708 0.62167 1.34715 1.42486 1.44206 1.52579 2.07305 2.19604 2.53538 2.82411 3.01391 3.05650 3.35866 3.57142 3.72044 3.75783 3.88091 3.89877 3.93047 4.06527 4.13284 4.15736 4.23602 4.30042 4.44226 4.61159 4.77865 4.80712 4.84881 4.86010 4.88868 4.96060 4.96827 5.02356 5.11054 5.15494 5.26346 5.30503 5.32533 5.42938 5.46338 5.59958 6.25404 6.48704 6.53048 7.15848 7.32934 8.07626 8.35739 9.26017 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009508 B = 0.003810 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.129919 B = 7347.165682 C = 9109.808802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.213 3.787 3 C 0.145 3.855 4 N -0.729 5.729 5 C -0.244 4.244 6 H 0.064 0.936 7 C -0.069 4.069 8 N -0.963 5.963 9 Si 0.968 3.032 10 H -0.291 1.291 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.689 5.689 14 C 0.597 3.403 15 O -0.567 6.567 16 C -0.322 4.322 17 C 0.104 3.896 18 N -0.497 5.497 19 C 0.079 3.921 20 C -0.121 4.121 21 C -0.146 4.146 22 C -0.137 4.137 23 S 0.229 5.771 24 C -0.177 4.177 25 C -0.160 4.160 26 C -0.156 4.156 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.377 0.623 33 H 0.251 0.749 34 H 0.407 0.593 35 H 0.197 0.803 36 H 0.150 0.850 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.304 -14.871 10.534 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.127 3.873 3 C 0.018 3.982 4 N -0.372 5.372 5 C -0.376 4.376 6 H 0.082 0.918 7 C -0.261 4.261 8 N -0.614 5.614 9 Si 0.797 3.203 10 H -0.219 1.219 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.340 5.340 14 C 0.383 3.617 15 O -0.448 6.448 16 C -0.446 4.446 17 C -0.055 4.055 18 N -0.211 5.211 19 C -0.194 4.194 20 C -0.142 4.142 21 C -0.186 4.186 22 C -0.176 4.176 23 S 0.490 5.510 24 C -0.196 4.196 25 C -0.197 4.197 26 C -0.193 4.193 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.210 0.790 33 H 0.060 0.940 34 H 0.243 0.757 35 H 0.213 0.787 36 H 0.168 0.832 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.110 -13.604 11.199 21.962 hybrid contribution 1.864 0.352 -1.139 2.213 sum -11.246 -13.252 10.060 20.082 Atomic orbital electron populations 1.22217 0.92614 1.03181 1.03349 1.19906 0.94387 0.90317 0.82680 1.21109 0.84313 0.95207 0.97582 1.42295 1.00738 1.05076 1.89133 1.19549 0.89694 0.87181 1.41217 0.91826 1.25419 0.97046 0.99899 1.03759 1.69781 1.06532 1.25556 1.59521 0.85228 0.78042 0.79783 0.77265 1.21865 1.21615 1.19746 1.45654 1.48701 1.35301 1.04301 1.16847 0.79377 0.82973 0.82521 1.90748 1.40940 1.26369 1.86709 1.25745 1.14276 1.05389 0.99192 1.22404 0.94605 0.91854 0.96590 1.66102 1.23657 1.32930 0.98445 1.27105 0.97159 0.95435 0.99694 1.20875 1.10811 0.95567 0.86976 1.23090 0.93006 0.98442 1.04017 1.23152 0.96930 0.93559 1.03985 1.83891 1.46158 1.25240 0.95734 1.22242 0.99953 1.00308 0.97053 1.23197 0.99003 1.02057 0.95471 1.23046 1.03410 0.89939 1.02883 0.92293 0.90007 0.90385 0.95997 0.96478 0.78996 0.94042 0.75740 0.78652 0.83245 0.89080 0.85684 0.84967 0.89221 0.89381 0.86862 0.88142 0.87664 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 6.98 71.98 0.50 -3.91 16 2 C 0.21 7.10 0.54 3.61 0.00 7.11 16 3 C 0.15 6.49 5.03 86.38 0.43 6.93 16 4 N -0.73 -38.54 5.04 -343.45 -1.73 -40.27 16 5 C -0.24 -14.42 9.99 84.03 0.84 -13.58 16 6 H 0.06 3.73 7.83 -2.91 -0.02 3.71 16 7 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 8 N -0.96 -59.39 13.06 21.65 0.28 -59.11 16 9 Si 0.97 47.97 29.55 68.60 2.03 49.99 16 10 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 12 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.69 -22.52 4.71 -426.82 -2.01 -24.53 16 14 C 0.60 21.69 7.19 86.45 0.62 22.31 16 15 O -0.57 -24.14 13.20 -4.30 -0.06 -24.19 16 16 C -0.32 -10.12 6.48 23.88 0.15 -9.97 16 17 C 0.10 2.89 10.93 84.23 0.92 3.81 16 18 N -0.50 -13.39 9.98 -190.30 -1.90 -15.29 16 19 C 0.08 1.89 6.96 88.46 0.62 2.51 16 20 C -0.12 -1.96 6.28 -11.54 -0.07 -2.03 16 21 C -0.15 -2.07 10.12 30.59 0.31 -1.76 16 22 C -0.14 -1.67 10.23 30.60 0.31 -1.35 16 23 S 0.23 6.13 23.01 -56.49 -1.30 4.83 16 24 C -0.18 -5.23 4.84 -10.79 -0.05 -5.28 16 25 C -0.16 -3.60 9.64 30.62 0.30 -3.31 16 26 C -0.16 -3.28 9.82 30.62 0.30 -2.98 16 27 H 0.06 1.97 6.03 -2.39 -0.01 1.95 16 28 H 0.08 2.07 6.78 -2.39 -0.02 2.05 16 29 H 0.08 1.82 6.99 -2.39 -0.02 1.80 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.02 0.87 6.31 -2.39 -0.02 0.86 16 32 H 0.38 20.40 6.62 -92.71 -0.61 19.79 16 33 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 34 H 0.41 11.62 7.20 -92.71 -0.67 10.96 16 35 H 0.20 4.49 7.16 -2.91 -0.02 4.46 16 36 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 1.66 7.84 -2.38 -0.02 1.64 16 38 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 1.29 8.14 -2.38 -0.02 1.28 16 41 H 0.09 3.28 7.09 -2.39 -0.02 3.26 16 42 H 0.11 2.25 5.88 -2.39 -0.01 2.24 16 43 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.11 1.97 7.35 -2.39 -0.02 1.96 16 Total: -1.00 -74.71 378.78 0.73 -73.98 By element: Atomic # 1 Polarization: 39.94 SS G_CDS: -0.24 Total: 39.70 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 5.65 Total: -5.11 kcal Atomic # 7 Polarization: -133.84 SS G_CDS: -5.36 Total: -139.20 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.06 Total: -24.19 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 49.99 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -1.30 Total: 4.83 kcal Total: -74.71 0.73 -73.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753527312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.992 kcal (2) G-P(sol) polarization free energy of solvation -74.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds