Wall clock time and date at job start Tue Mar 31 2020 18:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52993 * 109.47206 * 2 1 4 4 N 1.46500 * 109.47497 * 300.00185 * 3 2 1 5 5 C 1.36932 * 120.00529 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99949 * 359.72282 * 5 4 3 7 7 C 1.38812 * 120.00094 * 179.97438 * 5 4 3 8 8 N 1.31621 * 119.99897 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99904 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47253 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47092 * 119.99868 * 9 7 5 12 12 H 1.48503 * 109.47085 * 239.99765 * 9 7 5 13 13 N 1.46505 * 109.46832 * 239.99943 * 2 1 3 14 14 C 1.34773 * 119.99544 * 174.51843 * 13 2 1 15 15 O 1.21690 * 120.00461 * 5.20556 * 14 13 2 16 16 C 1.46684 * 119.99782 * 185.20515 * 14 13 2 17 17 C 1.35655 * 126.12967 * 359.69174 * 16 14 13 18 18 N 1.30949 * 114.19428 * 179.82381 * 17 16 14 19 19 C 1.29433 * 117.35655 * 0.48200 * 18 17 16 20 20 C 1.50703 * 124.80049 * 179.76934 * 19 18 17 21 21 C 1.52997 * 117.49929 * 8.57747 * 20 19 18 22 22 C 1.52998 * 60.00086 * 252.51433 * 21 20 19 23 23 S 1.70948 * 110.39171 * 359.72951 * 19 18 17 24 24 C 1.52999 * 109.47033 * 120.00063 * 2 1 3 25 25 C 1.52997 * 117.49927 * 122.32002 * 24 2 1 26 26 C 1.53003 * 117.50037 * 53.66316 * 24 2 1 27 27 H 1.09001 * 109.46727 * 60.00200 * 1 2 3 28 28 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46606 * 300.00150 * 1 2 3 30 30 H 1.08999 * 109.47349 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47401 * 59.99632 * 3 2 1 32 32 H 0.97005 * 119.99373 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99422 * 180.02562 * 8 7 5 34 34 H 0.96995 * 119.99931 * 354.51152 * 13 2 1 35 35 H 1.07999 * 122.90764 * 359.97438 * 17 16 14 36 36 H 1.09000 * 115.54750 * 154.28627 * 20 19 18 37 37 H 1.09004 * 117.50234 * 0.02562 * 21 20 19 38 38 H 1.09002 * 117.49770 * 145.02223 * 21 20 19 39 39 H 1.09002 * 117.49567 * 252.51608 * 22 21 20 40 40 H 1.09000 * 117.51849 * 107.48610 * 22 21 20 41 41 H 1.08997 * 115.54924 * 267.99214 * 24 2 1 42 42 H 1.09000 * 117.50178 * 0.02562 * 25 24 2 43 43 H 1.08999 * 117.49619 * 145.01974 * 25 24 2 44 44 H 1.08998 * 117.49681 * 214.97926 * 26 24 2 45 45 H 1.09003 * 117.49714 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5518 2.1331 -1.1961 5 6 1.8830 3.4439 -1.4131 6 1 2.5006 3.9700 -0.7002 7 6 1.4207 4.0982 -2.5467 8 7 0.6644 3.4583 -3.4134 9 14 1.8732 5.8862 -2.8431 10 1 2.7278 6.3716 -1.7299 11 1 2.6158 6.0032 -4.1238 12 1 0.6362 6.7050 -2.9115 13 7 2.0184 -0.6907 -1.1962 14 6 3.3384 -0.7181 -1.4668 15 8 4.1325 -0.2525 -0.6709 16 6 3.8179 -1.3093 -2.7206 17 6 3.0475 -1.8661 -3.6885 18 7 3.7210 -2.3212 -4.7150 19 6 5.0092 -2.1988 -4.6828 20 6 5.9450 -2.6667 -5.7674 21 6 5.3216 -3.1499 -7.0785 22 6 5.9411 -4.1582 -6.1088 23 16 5.4985 -1.4303 -3.2363 24 6 2.0401 -0.7213 1.2492 25 6 2.9596 -1.9266 1.0432 26 6 1.5174 -2.1351 1.5116 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 0.8900 32 1 0.9944 1.6616 -1.8348 33 1 0.3417 3.9155 -4.2057 34 1 1.3917 -1.1282 -1.7934 35 1 1.9714 -1.9265 -3.6195 36 1 6.8970 -2.1392 -5.8268 37 1 4.2346 -3.1289 -7.1567 38 1 5.8634 -2.9401 -8.0007 39 1 6.8907 -4.6118 -6.3931 40 1 5.2620 -4.8010 -5.5487 41 1 2.2293 -0.0860 2.1145 42 1 3.2017 -2.2055 0.0176 43 1 3.7536 -2.0844 1.7731 44 1 1.3631 -2.4301 2.5495 45 1 0.8099 -2.5513 0.7944 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753527313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:29 Heat of formation + Delta-G solvation = 87.888279 kcal Electronic energy + Delta-G solvation = -27077.796122 eV Core-core repulsion = 23417.906381 eV Total energy + Delta-G solvation = -3659.889741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53745 -39.68968 -37.32422 -36.80308 -34.97158 -33.41366 -31.74992 -30.19701 -29.24464 -26.57086 -25.98764 -23.74702 -23.03237 -22.60111 -22.08763 -21.78189 -21.26431 -19.48210 -18.93333 -18.11709 -17.27361 -16.97238 -16.07588 -15.83103 -15.35039 -14.86306 -14.51494 -14.37560 -14.30580 -14.16090 -13.68069 -13.42477 -13.25121 -12.84775 -12.44085 -12.15313 -12.10700 -11.90889 -11.75242 -11.46634 -11.33785 -11.08032 -11.02273 -10.87882 -10.85717 -10.77954 -10.74155 -10.22802 -10.11456 -9.96703 -9.70292 -9.65002 -9.36556 -9.29025 -8.82873 -8.73890 -8.59743 -6.81944 -5.71907 -2.97928 0.30920 1.17235 1.72840 2.49796 3.36970 3.46152 3.52391 3.54430 3.56231 3.62222 3.93965 4.04622 4.53679 4.58742 4.62649 4.73341 4.87275 4.95893 5.11933 5.14171 5.17821 5.29018 5.38329 5.42933 5.54379 5.55882 5.64946 5.71558 5.75753 5.78450 5.94636 5.99226 6.04724 6.05290 6.17363 6.27183 6.30565 6.37666 6.57903 6.63411 6.90071 7.12798 7.62076 7.76712 7.79708 8.47621 8.51904 9.59187 10.16902 10.52549 11.51377 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008782 B = 0.004419 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.479437 B = 6334.352907 C = 8594.273009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.202 3.798 3 C 0.141 3.859 4 N -0.726 5.726 5 C -0.229 4.229 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.935 5.935 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 N -0.703 5.703 14 C 0.604 3.396 15 O -0.519 6.519 16 C -0.284 4.284 17 C 0.091 3.909 18 N -0.477 5.477 19 C 0.062 3.938 20 C -0.099 4.099 21 C -0.148 4.148 22 C -0.155 4.155 23 S 0.233 5.767 24 C -0.143 4.143 25 C -0.158 4.158 26 C -0.185 4.185 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.024 0.976 32 H 0.381 0.619 33 H 0.252 0.748 34 H 0.395 0.605 35 H 0.179 0.821 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -18.414 -0.026 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.117 3.883 3 C 0.013 3.987 4 N -0.371 5.371 5 C -0.361 4.361 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.585 5.585 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.354 5.354 14 C 0.389 3.611 15 O -0.396 6.396 16 C -0.409 4.409 17 C -0.067 4.067 18 N -0.192 5.192 19 C -0.212 4.212 20 C -0.121 4.121 21 C -0.187 4.187 22 C -0.194 4.194 23 S 0.492 5.508 24 C -0.162 4.162 25 C -0.195 4.195 26 C -0.222 4.222 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.216 0.784 33 H 0.062 0.938 34 H 0.229 0.771 35 H 0.196 0.804 36 H 0.146 0.854 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.125 -17.800 0.580 19.575 hybrid contribution -1.332 0.835 -0.721 1.729 sum 6.793 -16.966 -0.140 18.275 Atomic orbital electron populations 1.21994 0.92889 1.01449 1.04217 1.20112 0.93793 0.92545 0.81879 1.21104 0.98865 0.87679 0.91093 1.42261 1.61212 1.10510 1.23081 1.19271 1.25044 0.87549 1.04194 0.91310 1.24671 1.00784 0.98150 0.97487 1.69656 1.39825 1.35927 1.13102 0.86151 0.77485 0.85240 0.77594 1.20598 1.22028 1.21963 1.45727 1.06415 1.56353 1.26906 1.16383 0.82924 0.78397 0.83410 1.90821 1.54756 1.46045 1.47966 1.25912 0.97589 1.13686 1.03665 1.22062 1.01282 0.95795 0.87537 1.65977 1.05417 1.21106 1.26662 1.26417 0.93673 1.01471 0.99651 1.20522 0.98238 0.98715 0.94600 1.23016 1.02124 1.01500 0.92060 1.23043 1.03188 0.90173 1.03015 1.83940 1.05003 1.50546 1.11286 1.22529 1.04116 0.90266 0.99330 1.22902 0.92533 1.02028 1.02035 1.22992 0.97765 0.99945 1.01543 0.90645 0.92791 0.90816 0.93155 0.95814 0.78441 0.93776 0.77073 0.80407 0.85403 0.87234 0.88042 0.87875 0.88297 0.87321 0.89180 0.89528 0.89342 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.18 37.16 0.30 -1.86 16 2 C 0.20 3.30 0.55 -131.81 -0.07 3.23 16 3 C 0.14 2.99 4.83 -4.05 -0.02 2.97 16 4 N -0.73 -18.45 5.17 -59.91 -0.31 -18.76 16 5 C -0.23 -6.59 9.99 -15.06 -0.15 -6.74 16 6 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 7 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 8 N -0.94 -28.40 13.06 55.49 0.72 -27.67 16 9 Si 0.90 23.07 29.55 -169.99 -5.02 18.05 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 N -0.70 -11.03 4.17 -48.89 -0.20 -11.23 16 14 C 0.60 10.61 5.05 -12.85 -0.06 10.54 16 15 O -0.52 -10.52 12.90 5.20 0.07 -10.45 16 16 C -0.28 -4.50 6.48 -37.10 -0.24 -4.74 16 17 C 0.09 1.31 10.93 -18.85 -0.21 1.11 16 18 N -0.48 -6.84 9.98 -11.50 -0.11 -6.95 16 19 C 0.06 0.80 6.96 -13.29 -0.09 0.70 16 20 C -0.10 -0.96 6.28 -91.77 -0.58 -1.54 16 21 C -0.15 -1.29 10.12 -26.73 -0.27 -1.56 16 22 C -0.16 -1.21 10.23 -26.73 -0.27 -1.49 16 23 S 0.23 3.23 23.01 -107.50 -2.47 0.75 16 24 C -0.14 -2.07 4.81 -90.62 -0.44 -2.51 16 25 C -0.16 -2.20 8.28 -26.70 -0.22 -2.42 16 26 C -0.19 -2.20 9.68 -26.69 -0.26 -2.46 16 27 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16 28 H 0.05 0.64 6.92 -51.93 -0.36 0.28 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.20 5.96 -51.93 -0.31 0.90 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.38 9.92 6.35 -40.82 -0.26 9.66 16 33 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.40 5.27 7.21 -40.82 -0.29 4.98 16 35 H 0.18 2.14 7.16 -52.49 -0.38 1.77 16 36 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.11 1.13 7.84 -51.93 -0.41 0.72 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 1.58 8.06 -51.93 -0.42 1.17 16 42 H 0.09 1.35 5.12 -51.93 -0.27 1.08 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.00 7.21 -51.93 -0.37 0.63 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -33.81 377.00 -10.67 -44.49 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.35 Total: 13.40 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -2.67 Total: -7.30 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: 0.10 Total: -64.61 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.47 Total: 0.75 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.81 -10.67 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753527313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.374 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds